Aire-Deficient C57BL/6 Mice Mimicking the Common Human 13-Base Pair Deletion Mutation Present with Only a Mild Autoimmune Phenotype
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AIRE Variations in Addison's Disease and Autoimmune Polyendocrine Syndromes
Genes and Immunity (2008) 9, 130–136 & 2008 Nature Publishing Group All rights reserved 1466-4879/08 $30.00 www.nature.com/gene ORIGINAL ARTICLE AIRE variations in Addison’s disease and autoimmune polyendocrine syndromes (APS): partial gene deletions contribute to APS I AS Bøe Wolff1,2,3,7, B Oftedal1,2,7, S Johansson3,4, O Bruland3, K Løva˚s1,2, A Meager5, C Pedersen6, ES Husebye1,2 and PM Knappskog3,4 1Institute of Medicine, University of Bergen, Bergen, Norway; 2Department of Medicine, Haukeland University Hospital, Bergen, Norway; 3Center for Medical Genetics and Molecular Medicine, Haukeland University Hospital, Bergen, Norway; 4Department of Clinical Medicine, University of Bergen, Bergen, Norway; 5Biotherapeutics Group, The National Institute for Biological Standards and Control, Blanche Lane, South Mimms, Herts, UK and 6Department of Pediatrics, Kolding Hospital, Kolding, Denmark Autoimmune Addison’s disease (AAD) is often associated with other components in autoimmune polyendocrine syndromes (APS). Whereas APS I is caused by mutations in the AIRE gene, the susceptibility genes for AAD and APS II are unclear. In the present study, we investigated whether polymorphisms or copy number variations in the AIRE gene were associated with AAD and APS II. First, nine SNPs in the AIRE gene were analyzed in 311 patients with AAD and APS II and 521 healthy controls, identifying no associated risk. Second, in a subgroup of 25 of these patients, AIRE sequencing revealed three novel polymorphisms. Finally, the AIRE copy number was determined by duplex quantitative PCR in 14 patients with APS I, 161 patients with AAD and APS II and in 39 healthy subjects. -
Sexual Dimorphism in the Immune Response: Endocrinologic and Genetic Insights
RIJKSUNIVERSITEIT GRONINGEN Sexual dimorphism in the immune response: endocrinologic and genetic insights Author: Lisa Wanders Supervisor: Dr. M.M. Faas Master-essay 29.05.2016 Sexual dimorphism in the immune response: endocrinologic and genetic insights Author: Lisa Wanders Supervisor: Dr. M.M. Faas Group: Medical Biology Abstract Differences in the immune response exist between men and women. While females have a stronger adaptive immune response, including the cellular and humoral response, males have a stronger and more sensitive innate immune response. This essay reviews these differences and focuses on sex hormones and genetics as possible underlying causes. The implications for a variety of conditions are discussed. Females have a higher predisposition to acquire autoimmune diseases and are more susceptible to acute graft rejections but are at the same time more resistant to infections and gain better protection from vaccinations. Males on the other hand have a higher risk to develop multiple organ failure after trauma and severe infections after surgery. Moreover, higher rates of sepsis are observed in males compared to females. Despite extensive research in this field, many of the mechanisms underlying the sexual dimorphism in the immune response are still unknown. 1 Table of contents 1. Introduction ..................................................................................................................................... 3 2. Sex-based differences in the immune response ............................................................................ -
The Association of Single Nucleotide Polymorphisms in Intronic Regions of Islet Cell Autoantigen 1 and Type 1 Diabetes Mellitus
THE ASSOCIATION OF SINGLE NUCLEOTIDE POLYMORPHISMS IN INTRONIC REGIONS OF ISLET CELL AUTOANTIGEN 1 AND TYPE 1 DIABETES MELLITUS by Carrie Lynn Blout B.S., Dickinson College, 2004 Submitted to the Graduate Faculty of Department of Human Genetics – Genetic Counseling the University of Pittsburgh in partial fulfillment of the requirements for the degree of Masters of Science University of Pittsburgh 2006 UNIVERSITY OF PITTSBURGH THE GRADUATE SCHOOL OF PUBLIC HEALTH This thesis was presented by Carrie Lynn Blout It was defended on March 30, 2006 and approved by Committee Member: Elizabeth Gettig, MS, CGC Associate Professor of Human Genetics Director, Genetic Counseling Program Graduate School of Public Health University of Pittsburgh Committee Member: John W. Wilson, PhD Assistant Professor Department of Biostatistics Graduate School of Public Health University of Pittsburgh Committee Member: Michael M. Barmada, Ph.D. Associate Professor of Human Genetics Director, Human Genetics Department Computational Resources Division Graduate School of Public Health University of Pittsburgh Thesis Advisor: Massimo Pietropaolo, M.D. University of Pittsburgh Physicians Faculty UPMC Department of Pediatrics Rangos Research Center Genetic Immunology University of Pittsburgh ii THE ASSOCIATION OF SINGLE NUCLEOTIDE POLYMORPHISMS, LOCATED WITHIN INTRONIC REGIONS OF ISLET CELL AUTOANTIGEN 1 AND TYPE 1 DIABETES MELLITUS Carrie L. Blout, M.S. University of Pittsburgh, 2006 Type 1 diabetes mellitus is a multifactorial autoimmune disease caused by a combination of genetic and environmental factors. Further knowledge and understanding about the genes which play a role in type 1 diabetes has a clear public health significance in that it will aid in the prediction, treatment and a possible cure. -
Comparative Genome Mapping in the Sequence-Based Era: Early Experience with Human Chromosome 7
Downloaded from genome.cshlp.org on May 28, 2019 - Published by Cold Spring Harbor Laboratory Press First Glimpses/Report Comparative Genome Mapping in the Sequence-based Era: Early Experience with Human Chromosome 7 James W. Thomas,1 Tyrone J. Summers,1 Shih-Queen Lee-Lin,1 Valerie V. Braden Maduro,1 Jacquelyn R. Idol,1 Stephen D. Mastrian,1 Joseph F. Ryan,1 D. Curtis Jamison,1 and Eric D. Green1,2 1Genome Technology Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland 20892 USA The success of the ongoing Human Genome Project has resulted in accelerated plans for completing the human genome sequence and the earlier-than-anticipated initiation of efforts to sequence the mouse genome. As a complement to these efforts, we are utilizing the available human sequence to refine human-mouse comparative maps and to assemble sequence-ready mouse physical maps. Here we describe how the first glimpses of genomic sequence from human chromosome 7 are directly facilitating these activities. Specifically, we are actively enhancing the available human-mouse comparative map by analyzing human chromosome 7 sequence for the presence of orthologs of mapped mouse genes. Such orthologs can then be precisely positioned relative to mapped human STSs and other genes. The chromosome 7 sequence generated to date has allowed us to more than double the number of genes that can be placed on the comparative map. The latter effort reveals that human chromosome 7 is represented by at least 20 orthologous segments of DNA in the mouse genome. A second component of our program involves systematically analyzing the evolving human chromosome 7 sequence for the presence of matching mouse genes and expressed-sequence tags (ESTs). -
Ncounter® Mouse Autoimmune Profiling Panel - Gene and Probe Details
nCounter® Mouse AutoImmune Profiling Panel - Gene and Probe Details Official Symbol Accession Alias / Previous Symbol Official Full Name Other targets or Isoform Information AW208573,CD143,expressed sequence AW208573,MGD-MRK- Ace NM_009598.1 1032,MGI:2144508 angiotensin I converting enzyme (peptidyl-dipeptidase A) 1 2610036I19Rik,2610510L13Rik,Acinus,apoptotic chromatin condensation inducer in the nucleus,C79325,expressed sequence C79325,MGI:1913562,MGI:1919776,MGI:2145862,mKIAA0670,RIKEN cDNA Acin1 NM_001085472.2 2610036I19 gene,RIKEN cDNA 2610510L13 gene apoptotic chromatin condensation inducer 1 Acp5 NM_001102405.1 MGD-MRK-1052,TRACP,TRAP acid phosphatase 5, tartrate resistant 2310066K23Rik,AA960180,AI851923,Arp1b,expressed sequence AA960180,expressed sequence AI851923,MGI:2138136,MGI:2138359,RIKEN Actr1b NM_146107.2 cDNA 2310066K23 gene ARP1 actin-related protein 1B, centractin beta Adam17 NM_001277266.1 CD156b,Tace,tumor necrosis factor-alpha converting enzyme a disintegrin and metallopeptidase domain 17 ADAR1,Adar1p110,Adar1p150,AV242451,expressed sequence Adar NM_001038587.3 AV242451,MGI:2139942,mZaADAR adenosine deaminase, RNA-specific Adora2a NM_009630.2 A2AAR,A2aR,A2a, Rs,AA2AR,MGD-MRK-16163 adenosine A2a receptor Ager NM_007425.2 RAGE advanced glycosylation end product-specific receptor AI265500,angiotensin precursor,Aogen,expressed sequence AI265500,MGD- Agt NM_007428.3 MRK-1192,MGI:2142488,Serpina8 angiotensinogen (serpin peptidase inhibitor, clade A, member 8) Ah,Ahh,Ahre,aromatic hydrocarbon responsiveness,aryl hydrocarbon -
Our Environment Shapes Us: the Importance of Environment and Sex Differences in Regulation of Autoantibody Production
REVIEW published: 08 March 2018 doi: 10.3389/fimmu.2018.00478 Our Environment Shapes Us: The Importance of Environment and Sex Differences in Regulation of Autoantibody Production Michael Edwards, Rujuan Dai and S. Ansar Ahmed* Department of Biomedical Sciences and Pathobiology, Virginia-Maryland College of Veterinary Medicine, Virginia Tech, Blacksburg, VA, United States Consequential differences exist between the male and female immune systems’ ability to respond to pathogens, environmental insults or self-antigens, and subsequent effects on immunoregulation. In general, females when compared with their male counterparts, respond to pathogenic stimuli and vaccines more robustly, with heightened production of antibodies, pro-inflammatory cytokines, and chemokines. While the precise reasons for sex differences in immune response to different stimuli are not yet well understood, females are more resistant to infectious diseases and much more likely to develop auto- Edited by: Ralf J. Ludwig, immune diseases. Intrinsic (i.e., sex hormones, sex chromosomes, etc.) and extrinsic University of Lübeck, (microbiome composition, external triggers, and immune modulators) factors appear to Germany impact the overall outcome of immune responses between sexes. Evidence suggests Reviewed by: Ayanabha Chakraborti, that interactions between environmental contaminants [e.g., endocrine disrupting chemi- University of Alabama at cals (EDCs)] and host leukocytes affect the ability of the immune system to mount a Birmingham, United States response to exogenous and endogenous insults, and/or return to normal activity following Jun-ichi Kira, Kyushu University, Japan clearance of the threat. Inherently, males and females have differential immune response Maja Wallberg, to external triggers. In this review, we describe how environmental chemicals, including University of Cambridge, United Kingdom EDCs, may have sex differential influence on the outcome of immune responses through *Correspondence: alterations in epigenetic status (such as modulation of microRNA expression, gene S. -
Express Yourself Immune Evasion by Anthrax
HIGHLIGHTS MACROPHAGES Bacillus anthracis, the causative agent (LPS)-activated macrophages. First, of anthrax, kills macrophages and they showed that LT causes the apop- evades the host immune response by tosis of LPS-treated macrophages; secreting a protein that leads to the then, they investigated the signalling Immune evasion inhibition of p38 mitogen-activated pathways involved. At the concentra- LF protein kinase (p38 MAPK), accord- tion that is required to induce apopto- by anthrax PA ing to a report in Science.The activity sis, LT inhibits the activation of ERK, of this MAPK is required for the c-Jun NH2-terminal kinase 1 (JNK1) transcription of certain downstream and p38, but the activity of JNK2 and nuclear factor-κB (NF-κB) targets. inhibitor of NF-κB (IκB) kinase (IKK) LT Macrophage Three proteins secreted by B. anthr- is unaffected. The authors used spe- acis are important for its pathogenic- cific MAPK inhibitors to determine ity: protective antigen (PA), oedema the contribution of these MAPK cas- factor (EF) and lethal factor (LF). PA cades to LT-induced apoptosis. Only enables EF and LF to enter the cytosol the p38-specific inhibitor (SB202190) of host cells, where EF causes tissue induced apoptosis of LPS-activated oedema and LF acts as a metallopro- macrophages, which indicates that LT X tease, cleaving MAPK kinases (MKKs) might cause apoptosis by inhibiting P and thereby preventing MAPK activa- p38 signalling. MKKs p38 X tion. Lethal toxin (LT; a complex of Macrophages lacking IKK and activated PA and LF) has been shown NF-κB activity were shown to be sen- to be cytotoxic for macrophages, but it sitive to LPS-induced apoptosis also. -
Meta-Analysis of Gene Signatures and Key Pathways Indicates
www.nature.com/scientificreports OPEN Meta‑analysis of gene signatures and key pathways indicates suppression of JNK pathway as a regulator of chemo‑resistance in AML Parastoo Modarres1, Farzaneh Mohamadi Farsani1,3, Amir Abas Nekouie2 & Sadeq Vallian1* The pathways and robust deregulated gene signatures involved in AML chemo‑resistance are not fully understood. Multiple subgroups of AMLs which are under treatment of various regimens seem to have similar regulatory gene(s) or pathway(s) related to their chemo‑resistance phenotype. In this study using gene set enrichment approach, deregulated genes and pathways associated with relapse after chemotherapy were investigated in AML samples. Five AML libraries compiled from GEO and ArrayExpress repositories were used to identify signifcantly diferentially expressed genes between chemo‑resistance and chemo‑sensitive groups. Functional and pathway enrichment analysis of diferentially expressed genes was performed to assess molecular mechanisms related to AML chemotherapeutic resistance. A total of 34 genes selected to be diferentially expressed in the chemo‑ resistance compared to the chemo‑sensitive group. Among the genes selected, c-Jun, AKT3, ARAP3, GABBR1, PELI2 and SORT1 are involved in neurotrophin, estrogen, cAMP and Toll‑like receptor signaling pathways. All these pathways are located upstream and regulate JNK signaling pathway which functions as a key regulator of cellular apoptosis. Our expression data are in favor of suppression of JNK pathway, which could induce pro‑apoptotic gene expression as well as down regulation of survival factors, introducing this pathway as a key regulator of drug‑resistance development in AML. Acute myeloid leukemia (AML) is one of the most aggressive, life-threatening hematological malignancies char- acterized by uncontrolled proliferation of abnormal diferentiated and nonfunctional myeloid precursor cells1. -
Role of Genomic Variants in the Response to Biologics Targeting Common Autoimmune Disorders
Role of genomic variants in the response to biologics targeting common autoimmune disorders by Gordana Lenert, PhD The thesis submitted to the Faculty of Graduate and Postdoctoral Affairs in partial fulfillment of the requirements for the degree of Master of Science Ottawa-Carleton Joint Program in Bioinformatics Carleton University Ottawa, Canada © 2016 Gordana Lenert Abstract Autoimmune diseases (AID) are common chronic inflammatory conditions initiated by the loss of the immunological tolerance to self-antigens. Chronic immune response and uncontrolled inflammation provoke diverse clinical manifestations, causing impairment of various tissues, organs or organ systems. To avoid disability and death, AID must be managed in clinical practice over long periods with complex and closely controlled medication regimens. The anti-tumor necrosis factor biologics (aTNFs) are targeted therapeutic drugs used for AID management. However, in spite of being very successful therapeutics, aTNFs are not able to induce remission in one third of AID phenotypes. In our research, we investigated genomic variability of AID phenotypes in order to explain unpredictable lack of response to aTNFs. Our hypothesis is that key genetic factors, responsible for the aTNFs unresponsiveness, are positioned at the crossroads between aTNF therapeutic processes that generate remission and pathogenic or disease processes that lead to AID phenotypes expression. In order to find these key genetic factors at the intersection of the curative and the disease pathways, we combined genomic variation data collected from publicly available curated AID genome wide association studies (AID GWAS) for each disease. Using collected data, we performed prioritization of genes and other genomic structures, defined the key disease pathways and networks, and related the results with the known data by the bioinformatics approaches. -
Trim24-Regulated Estrogen Response Is Dependent on Specific Histone Modifications in Breast Cancer Cells
The Texas Medical Center Library DigitalCommons@TMC The University of Texas MD Anderson Cancer Center UTHealth Graduate School of The University of Texas MD Anderson Cancer Biomedical Sciences Dissertations and Theses Center UTHealth Graduate School of (Open Access) Biomedical Sciences 12-2012 TRIM24-REGULATED ESTROGEN RESPONSE IS DEPENDENT ON SPECIFIC HISTONE MODIFICATIONS IN BREAST CANCER CELLS Teresa T. Yiu Follow this and additional works at: https://digitalcommons.library.tmc.edu/utgsbs_dissertations Part of the Biochemistry Commons, Cancer Biology Commons, Medicine and Health Sciences Commons, and the Molecular Biology Commons Recommended Citation Yiu, Teresa T., "TRIM24-REGULATED ESTROGEN RESPONSE IS DEPENDENT ON SPECIFIC HISTONE MODIFICATIONS IN BREAST CANCER CELLS" (2012). The University of Texas MD Anderson Cancer Center UTHealth Graduate School of Biomedical Sciences Dissertations and Theses (Open Access). 313. https://digitalcommons.library.tmc.edu/utgsbs_dissertations/313 This Dissertation (PhD) is brought to you for free and open access by the The University of Texas MD Anderson Cancer Center UTHealth Graduate School of Biomedical Sciences at DigitalCommons@TMC. It has been accepted for inclusion in The University of Texas MD Anderson Cancer Center UTHealth Graduate School of Biomedical Sciences Dissertations and Theses (Open Access) by an authorized administrator of DigitalCommons@TMC. For more information, please contact [email protected]. TRIM24-REGULATED ESTROGEN RESPONSE IS DEPENDENT ON SPECIFIC HISTONE -
Jci.Org Volume 126 Number 4 April 2016 1239 Commentary the Journal of Clinical Investigation
The Journal of Clinical Investigation COMMENTARY Estrogen turns down “the AIRE” Pearl Bakhru and Maureen A. Su Department of Pediatrics, Department of Microbiology and Immunology, School of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA. Early clues that sex hormones may Genetic alterations are known drivers of autoimmune disease; however, also modulate thymic stromal populations, there is a much higher incidence of autoimmunity in women, implicating such as mTECs, came from elegant studies sex-specific factors in disease development. The autoimmune regulator that utilized bone marrow chimeras (5, 6). (AIRE) gene contributes to the maintenance of central tolerance, and These studies showed that thymic epitheli- complete loss of AIRE function results in the development of autoimmune al cells express estrogen receptor (ER) and polyendocrinopathy syndrome type 1. In this issue of the JCI, Dragin and androgen receptor (AR) and that expres- colleagues demonstrate that AIRE expression is downregulated in females sion of these hormone receptors in the stromal compartment is required for alter- as the result of estrogen-mediated alterations at the AIRE promoter. The ing bone marrow–derived T cell subsets association between estrogen and reduction of AIRE may at least partially in the thymus (5, 6). In this issue, Dragin account for the elevated incidence of autoimmune disease in women and et al. confirm that sex hormones indeed has potential implications for sex hormone therapy. act on receptors on thymic stromal cells to impinge upon T cell development within the thymus. Furthermore, this study dem- onstrates that sex hormones regulate AIRE Autoimmune disease: autoimmune disease autoimmune poly- expression in mTECs and, in particular, sex-dependent differences endocrinopathy syndrome type 1 (APS1, estrogen decreases AIRE to predispose The incidence of autoimmune disease is which is also known as autoimmune poly- females to autoimmunity (7). -
Aire) Gene: a Comparative Analysis
Immunogenetics DOI 10.1007/s00251-007-0268-9 ORIGINAL PAPER Evolutionarily conserved and divergent regions of the Autoimmune Regulator (Aire) gene: a comparative analysis Mark Saltis & Michael F. Criscitiello & Yuko Ohta & Matthew Keefe & Nikolaus S. Trede & Ryo Goitsuka & Martin F. Flajnik Received: 17 August 2007 /Accepted: 5 December 2007 # Springer-Verlag 2007 Abstract During T cell differentiation, medullary thymic expressed sequence tags and genomic databases. The epithelial cells (MTEC) expose developing T cells to tissue- deduced amino acid sequences of Aire were compared specific antigens. MTEC expression of such self-antigens among mouse, human, opossum, chicken, Xenopus, zebra- requires the transcription factor autoimmune regulator fish, and pufferfish. The first of two plant homeodomains (Aire). In mammals, defects in aire result in multi-tissue, (PHD) in human Aire and regions associated with nuclear T cell-mediated autoimmunity. Because the T cell receptor and cytoplasmic localization are evolutionarily conserved, repertoire is randomly generated and extremely diverse in while other domains are either absent or divergent in one all jawed vertebrates, it is likely that an aire-dependent T or more vertebrate classes. Furthermore, the second zinc- cell tolerance mechanism also exists in nonmammalian binding domain previously named Aire PHD2 appears to vertebrates. We have isolated aire genes from animals in all have greater sequence similarity with Ring finger domains gnathostome classes except the cartilaginous fish by a than to PHD domains. Point mutations in defective human combination of molecular techniques and scanning of aire genes are generally found in the most evolutionarily conserved regions of the protein. These findings reveal a Electronic supplementary material The online version of this article very rapid evolution of certain regions of aire during (doi:10.1007/s00251-007-0268-9) contains supplementary material, vertebrate evolution and support the existence of an aire- which is available to authorized users.