Genus and Family: Concepts and Natural Groupings
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Liliaceae S.L. (Lily Family)
Liliaceae s.l. (Lily family) Photo: Ben Legler Photo: Hannah Marx Photo: Hannah Marx Lilium columbianum Xerophyllum tenax Trillium ovatum Liliaceae s.l. (Lily family) Photo: Yaowu Yuan Fritillaria lanceolata Ref.1 Textbook DVD KRR&DLN Erythronium americanum Allium vineale Liliaceae s.l. (Lily family) Herbs; Ref.2 Stems often modified as underground rhizomes, corms, or bulbs; Flowers actinomorphic; 3 sepals and 3 petals or 6 tepals, 6 stamens, 3 carpels, ovary superior (or inferior). Tulipa gesneriana Liliaceae s.l. (Lily family) “Liliaceae” s.l. (sensu lato: “in the broad sense”) - Lily family; 288 genera/4950 species, including Lilium, Allium, Trillium, Tulipa; This family is treated in a very broad sense in this class, as in the Flora of the Pacific Northwest. The “Liliaceae” s.l. taught in this class is not monophyletic. It is apparent now that the family should be treated in a narrower sense and some of the members should form their own families. Judd et al. recognize 15+ families: Agavaceae, Alliaceae, Amarylidaceae, Asparagaceae, Asphodelaceae, Colchicaceae, Dracaenaceae (Nolinaceae), Hyacinthaceae, Liliaceae, Melanthiaceae, Ruscaceae, Smilacaceae, Themidaceae, Trilliaceae, Uvulariaceae and more!!! (see web reading “Consider the Lilies”) Iridaceae (Iris family) Photo: Hannah Marx Photo: Hannah Marx Iris pseudacorus Iridaceae (Iris family) Photo: Yaowu Yuan Photo: Yaowu Yuan Sisyrinchium douglasii Sisyrinchium sp. Iridaceae (Iris family) Iridaceae - 78 genera/1750 species, Including Iris, Gladiolus, Sisyrinchium. Herbs, aquatic or terrestrial; Underground stems as rhizomes, bulbs, or corms; Leaves alternate, 2-ranked and equitant Ref.3 (oriented edgewise to the stem; Gladiolus italicus Flowers actinomorphic or zygomorphic; 3 sepals and 3 petals or 6 tepals; Stamens 3; Ovary of 3 fused carpels, inferior. -
Revised Glossary for AQA GCSE Biology Student Book
Biology Glossary amino acids small molecules from which proteins are A built abiotic factor physical or non-living conditions amylase a digestive enzyme (carbohydrase) that that affect the distribution of a population in an breaks down starch ecosystem, such as light, temperature, soil pH anaerobic respiration respiration without using absorption the process by which soluble products oxygen of digestion move into the blood from the small intestine antibacterial chemicals chemicals produced by plants as a defence mechanism; the amount abstinence method of contraception whereby the produced will increase if the plant is under attack couple refrains from intercourse, particularly when an egg might be in the oviduct antibiotic e.g. penicillin; medicines that work inside the body to kill bacterial pathogens accommodation ability of the eyes to change focus antibody protein normally present in the body acid rain rain water which is made more acidic by or produced in response to an antigen, which it pollutant gases neutralises, thus producing an immune response active site the place on an enzyme where the antimicrobial resistance (AMR) an increasing substrate molecule binds problem in the twenty-first century whereby active transport in active transport, cells use energy bacteria have evolved to develop resistance against to transport substances through cell membranes antibiotics due to their overuse against a concentration gradient antiretroviral drugs drugs used to treat HIV adaptation features that organisms have to help infections; they -
Congolius, a New Genus of African Reed Frog Endemic to The
www.nature.com/scientificreports OPEN Congolius, a new genus of African reed frog endemic to the central Congo: A potential case of convergent evolution Tadeáš Nečas1,2*, Gabriel Badjedjea3, Michal Vopálenský4 & Václav Gvoždík1,5* The reed frog genus Hyperolius (Afrobatrachia, Hyperoliidae) is a speciose genus containing over 140 species of mostly small to medium-sized frogs distributed in sub-Saharan Africa. Its high level of colour polymorphism, together with in anurans relatively rare sexual dichromatism, make systematic studies more difcult. As a result, the knowledge of the diversity and taxonomy of this genus is still limited. Hyperolius robustus known only from a handful of localities in rain forests of the central Congo Basin is one of the least known species. Here, we have used molecular methods for the frst time to study the phylogenetic position of this taxon, accompanied by an analysis of phenotype based on external (morphometric) and internal (osteological) morphological characters. Our phylogenetic results undoubtedly placed H. robustus out of Hyperolius into a common clade with sympatric Cryptothylax and West African Morerella. To prevent the uncovered paraphyly, we place H. robustus into a new genus, Congolius. The review of all available data suggests that the new genus is endemic to the central Congolian lowland rain forests. The analysis of phenotype underlined morphological similarity of the new genus to some Hyperolius species. This uniformity of body shape (including cranial shape) indicates that the two genera have either retained ancestral morphology or evolved through convergent evolution under similar ecological pressures in the African rain forests. African reed frogs, Hyperoliidae Laurent, 1943, are presently encompassing almost 230 species in 17 genera. -
§ 112 Implications for Genus Claims Lisa Larrimore Ouellette Genus and Species Claims
Advanced Patent Law Institute: Silicon Valley § 112 Implications for Genus Claims Lisa Larrimore Ouellette Genus and Species Claims genus fastener species screw R1 mammalian insulin cDNA R2 CH CH sequence 2 3 for rat CH3 insulin cDNA Genus and Species Claims: Anticipation . Single species always anticipates genus. Genus anticipates species only if species can be “at once envisaged” from genus. Generic chemical formula that represents limited number of compounds that PHOSITA can easily draw or name anticipates each compound. Generic chemical formula for vast number of compounds doesn’t anticipate each—and such a claim likely has § 112 problems… Genus and Species Claims: Section 112 . How can a patentee adequately describe and enable a genus? . When does a generic disclosure describe and enable a species? genus Disclosures required by § 112 serve not species just teaching function but also evidentiary function—showing what inventor actually possessed. Key policy lever for limiting claim scope to inventive contribution. Genus and Species Claims: Section 112 . How can a patentee adequately describe and enable a genus? . Ariad v. Eli Lilly . What is a representative number of species? . When is functional claiming ok? . When do you have to enable and describe unrecited elements? . Are § 112 genus claims only problematic in biotech? Ariad v. Eli Lilly (en banc 2010) . Genus claims for all methods of reducing binding of a certain transcription factor. inadequate description . Need “disclosure of either a representative number of species … or structural features common to the members of the genus so that one of skill in the art can ‘visualize or recognize’ the members of the genus.” . -
Occasional Papers of the Museum of Zoology University of Michigan Ann Arbor,Michigan
OCCASIONAL PAPERS OF THE MUSEUM OF ZOOLOGY UNIVERSITY OF MICHIGAN ANN ARBOR,MICHIGAN THE NEOTROPICAL GENUS PAZZUS (MECOPTERA: BITTACIDAE) I)ISC.OTIIRY 01 speclmeils of the unusual bittacid genus Pazzus in the Mecoptera collection of the Univeisity of Michigan Museum of Zoology led to an euainination of what little has been written about this genus. Appaiently, only tllice spccirnens have hitherto been known to science. A single male, collected in Peiu, was described by Nav,is in 1908 as Bzllacu~graczl!~. Five years later Navis concluded that this rem'ukable insect repiesented a new genus, which he named Ynzzzlr iln honor 01 Diego Alvarez tlc Paz, S.J. In the preparation of his 1921 monograph ot the Mecoptera of the wolld, Esben-Petersen ex,~inincd one male and onc lemale of P~rzrusfrom Panama, in the tollection 01 the British Museum. These he identified as Pnzzus gtnczlzs Nakis, at the same time presenting a sketch of the inale genitalia slid a pllotograph of the wings. For the past thirty-five years no furtl-~erspecimens 01 Pnz2us have been nlcntioned in entomological litelature. Illustlations ot wings oT Pnzr~,~in Navis' 1913 papel and Esben- Petersen's nronograph indicate cleai ly that the Pel u and Panama specilllens 'lie of one genus, for the ~enationancl shape of wing are tonspicuously different from those of all other bittacid genera. How- ever, on comparing Nakbs' original description 01 Bzttaczlr graczlzs with my notes on the British Mlrseum specimens so named, it is evident to me that there are two species involved. A female in the Unive~sity of ~idhi~aicollection, taken in a light trap at l'eiia Illanca, Los Santos, Panama, about 175 miles from the locality lrom which tlhe specimens in the British Museum came, appears to be tonspecihc with them. -
Developmental Regulation of the Expression of Amaryllidaceae Alkaloid Biosynthetic Genes in Narcissus Papyraceus
G C A T T A C G G C A T genes Article Developmental Regulation of the Expression of Amaryllidaceae Alkaloid Biosynthetic Genes in Narcissus papyraceus Tarun Hotchandani 1, Justine de Villers 1 and Isabel Desgagné-Penix 1,2,* 1 Department of Chemistry, Biochemistry and Physics, Université du Québec à Trois-Rivières, 3351 boulevard des Forges, Trois-Rivières, QC G9A 5H7, Canada 2 Plant Biology Research Group, Trois-Rivières, QC G9A 5H7, Canada * Correspondence: [email protected]; Tel.: +1-819-376-5011 Received: 6 July 2019; Accepted: 5 August 2019; Published: 7 August 2019 Abstract: Amaryllidaceae alkaloids (AAs) have multiple biological effects, which are of interest to the pharmaceutical industry. To unleash the potential of Amaryllidaceae plants as pharmaceutical crops and as sources of AAs, a thorough understanding of the AA biosynthetic pathway is needed. However, only few enzymes in the pathway are known. Here, we report the transcriptome of AA-producing paperwhites (Narcissus papyraceus Ker Gawl). We present a list of 21 genes putatively encoding enzymes involved in AA biosynthesis. Next, a cDNA library was created from 24 different samples of different parts at various developmental stages of N. papyraceus. The expression of AA biosynthetic genes was analyzed in each sample using RT-qPCR. In addition, the alkaloid content of each sample was analyzed by HPLC. Leaves and flowers were found to have the highest abundance of heterocyclic compounds, whereas the bulb, the lowest. Lycorine was also the predominant AA. The gene expression results were compared with the heterocyclic compound profiles for each sample. In some samples, a positive correlation was observed between the gene expression levels and the amount of compounds accumulated. -
Anatomy and Go Fish! Background
Anatomy and Go Fish! Background Introduction It is important to properly identify fi sh for many reasons: to follow the rules and regulations, for protection against sharp teeth or protruding spines, for the safety of the fi sh, and for consumption or eating purposes. When identifying fi sh, scientists and anglers use specifi c vocabulary to describe external or outside body parts. These body parts are common to most fi sh. The difference in the body parts is what helps distinguish one fi sh from another, while their similarities are used to classify them into groups. There are approximately 29,000 fi sh species in the world. In order to identify each type of fi sh, scientists have grouped them according to their outside body parts, specifi cally the number and location of fi ns, and body shape. Classifi cation Using a system of classifi cation, scientists arrange all organisms into groups based on their similarities. The fi rst system of classifi cation was proposed in 1753 by Carolus Linnaeus. Linnaeus believed that each organism should have a binomial name, genus and species, with species being the smallest organization unit of life. Using Linnaeus’ system as a guide, scientists created a hierarchical system known as taxonomic classifi cation, in which organisms are classifi ed into groups based on their similarities. This hierarchical system moves from largest and most general to smallest and most specifi c: kingdom, phylum, class, order, family, genus, and species. {See Figure 1. Taxonomic Classifi cation Pyramid}. For example, fi sh belong to the kingdom Animalia, the phylum Chordata, and from there are grouped more specifi cally into several classes, orders, families, and thousands of genus and species. -
Liliaceae Lily Family
Liliaceae lily family While there is much compelling evidence available to divide this polyphyletic family into as many as 25 families, the older classification sensu Cronquist is retained here. Page | 1222 Many are familiar as garden ornamentals and food plants such as onion, garlic, tulip and lily. The flowers are showy and mostly regular, three-merous and with a superior ovary. Key to genera A. Leaves mostly basal. B B. Flowers orange; 8–11cm long. Hemerocallis bb. Flowers not orange, much smaller. C C. Flowers solitary. Erythronium cc. Flowers several to many. D D. Leaves linear, or, absent at flowering time. E E. Flowers in an umbel, terminal, numerous; leaves Allium absent. ee. Flowers in an open cluster, or dense raceme. F F. Leaves with white stripe on midrib; flowers Ornithogalum white, 2–8 on long peduncles. ff. Leaves green; flowers greenish, in dense Triantha racemes on very short peduncles. dd. Leaves oval to elliptic, present at flowering. G G. Flowers in an umbel, 3–6, yellow. Clintonia gg. Flowers in a one-sided raceme, white. Convallaria aa. Leaves mostly cauline. H H. Leaves in one or more whorls. I I. Leaves in numerous whorls; flowers >4cm in diameter. Lilium ii. Leaves in 1–2 whorls; flowers much smaller. J J. Leaves 3 in a single whorl; flowers white or purple. Trillium jj. Leaves in 2 whorls, or 5–9 leaves; flowers yellow, small. Medeola hh. Leaves alternate. K K. Flowers numerous in a terminal inflorescence. L L. Plants delicate, glabrous; leaves 1–2 petiolate. Maianthemum ll. Plant coarse, robust; stems pubescent; leaves many, clasping Veratrum stem. -
Botany for the Herbalist Common Plant Families 7Song, Director Northeast School of Botanical Medicine 7Song.Com
Botany for the Herbalist Common Plant Families 7Song, Director Northeast School of Botanical Medicine 7Song.com This handout describes common plant families in the US and Canada. Each family segment contains general characteristics of the family as well as some of the more commonly known species within. In some families such as the Liliaceae, the genera of the plants are still in transition and being placed in newly created families. In other families such as the Scrophulariaceae, some of the former genera have been placed into different already existing families. Within this handout they are generally kept in the older family grouping with the new family identified next to the genus. Field botany is the study of identifying plants and grouping them into categories based on shared anatomical characteristics. Much of this is based on their reproductive parts, especially their flowers. One of the most useful starting points to identify specific plants in the field is by knowing their plant families. Families are a useful category to understand, as plants within them may share obvious traits both botanical (anatomical similarities) and other qualities such as aromatics. As far as medicinal characteristics within a family, there are generally more exceptions to shared traits than similarities in uses. An example showing both sides this is the Apiaceae. This family includes many aromatic, flavorful plants such as Dill, Fennel, and Angelica but also Poison hemlock (Conium), a notoriously poisonous plant. Another example is the Liliaceae with edible foods such as garlic, onion and asparagus but also the toxic Veratrum and Lily-of-the-valley (Convallaria). -
Taxonomic Classification Pipeline
E01-068-01 Explanation standard 16S-ITS microbial profiling analysis V3 Taxonomic classification pipeline OVERVIEW OF ANALYSIS STEPS INVOLVED IN THE TAXONOMIC CLASSIFICATION PIPELINE Short paired sequence reads were generated using the Illumina RDP 16S rRNA gene databases. Based on the alignment scores of the MiSeq system and converted into FASTQ files using the BCL2FASTQ pseudoreads, the taxonomic classes were assigned by associating pipeline version 2.18. The Illumina paired reads were merged into each pseudoread to the best matching taxon. The taxonomic depth single reads (so-called pseudoreads) through sequence overlap, after of the lineage is based on the identity threshold of the rank; Species removal of the forward and reverse primers. Chimeric pseudoreads 99%, Genus 97%, Family 95%, Order 90%, Class 85%, Phylum 80%. were removed and the remaining reads were aligned to the A brief overview of the pipeline is given in the figure below. Q-check Target amplification Illumina MiSeq Pseudoreads through (e.g. 16S rRNA, ITS) sequencing sequence overlap Interactive visualization Taxonomic classification Chimera removal in online portal based on DNA databases MORE INFORMATION 1 Ribosomal Database Project: data and tools for high throughput rRNA analysis. Cole JR, Wang JA et al. (Nucl Acids Res. 2014). PO Box 1336 T +31 (0)71 523 39 17 2302 BH Leiden E [email protected] The Netherlands W baseclear.com Metagenomics online analysis portal OVERVIEW PER PROJECT: TREE AND BAR-CHART In the project overview, a tree is been constructed on-the-fly: samples that share a similar taxonomic composition displayed in close proxi- FIGURE INTERPRETATION mity. -
Field Identification of the 50 Most Common Plant Families in Temperate Regions
Field identification of the 50 most common plant families in temperate regions (including agricultural, horticultural, and wild species) by Lena Struwe [email protected] © 2016, All rights reserved. Note: Listed characteristics are the most common characteristics; there might be exceptions in rare or tropical species. This compendium is available for free download without cost for non- commercial uses at http://www.rci.rutgers.edu/~struwe/. The author welcomes updates and corrections. 1 Overall phylogeny – living land plants Bryophytes Mosses, liverworts, hornworts Lycophytes Clubmosses, etc. Ferns and Fern Allies Ferns, horsetails, moonworts, etc. Gymnosperms Conifers, pines, cycads and cedars, etc. Magnoliids Monocots Fabids Ranunculales Rosids Malvids Caryophyllales Ericales Lamiids The treatment for flowering plants follows the APG IV (2016) Campanulids classification. Not all branches are shown. © Lena Struwe 2016, All rights reserved. 2 Included families (alphabetical list): Amaranthaceae Geraniaceae Amaryllidaceae Iridaceae Anacardiaceae Juglandaceae Apiaceae Juncaceae Apocynaceae Lamiaceae Araceae Lauraceae Araliaceae Liliaceae Asphodelaceae Magnoliaceae Asteraceae Malvaceae Betulaceae Moraceae Boraginaceae Myrtaceae Brassicaceae Oleaceae Bromeliaceae Orchidaceae Cactaceae Orobanchaceae Campanulaceae Pinaceae Caprifoliaceae Plantaginaceae Caryophyllaceae Poaceae Convolvulaceae Polygonaceae Cucurbitaceae Ranunculaceae Cupressaceae Rosaceae Cyperaceae Rubiaceae Equisetaceae Rutaceae Ericaceae Salicaceae Euphorbiaceae Scrophulariaceae -
THE GENUS HALOBATES (Hemiptera: Gerridae)
Pacific Insects 3 (2-3): 223-305 July 31, 1961 THE GENUS HALOBATES (Hemiptera: Gerridae) By Jon L. Herring1 INTRODUCTION Relatively few insects inhabit the sea. Certain Diptera, Coleoptera and a half dozen genera of Hemiptera may be considered marine because they occupy saline situations, such as rocky beaches, intertidal flats, mangrove swamps and the like, but only the water strid- ers have invaded the open ocean. Little is known of the distribution of the veliid, Halovelia, or the gerrid, Hermatobates, although both of these water striders have been taken in lagoons, coral reefs and harbors. It appears that these two genera, although exclusively halophilous, are confined to coastal situations. Water striders of the genus Halobates, however, are truly oceanic in habit. Several species maintain their entire existence hundreds of miles from the nearest land and have been taken on or near shore only after storms. The early workers considered all species of this genus to have an open-ocean distri bution since the attention of the early voyagers was attracted to these silvery gray insects only on the open sea. We now know, however, that only a few of the species maintain this existence. Most of them are endemic to particular islands or island groups. In this study all previous work has been reviewed. Much new material has been stud ied, and biological observations were made at the Marine Biological Station of the Uni versity of Hawaii. The resulting revision is the first since that of Buchanan-White 75 years ago. ACKNOWLEDGMENTS I wish first to express my appreciation to Dr.