Beak of the Fish: What Cichlid Flocks Reveal About Speciation Processes
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Phylogeny of a Rapidly Evolving Clade: the Cichlid Fishes of Lake Malawi
Proc. Natl. Acad. Sci. USA Vol. 96, pp. 5107–5110, April 1999 Evolution Phylogeny of a rapidly evolving clade: The cichlid fishes of Lake Malawi, East Africa (adaptive radiationysexual selectionyspeciationyamplified fragment length polymorphismylineage sorting) R. C. ALBERTSON,J.A.MARKERT,P.D.DANLEY, AND T. D. KOCHER† Department of Zoology and Program in Genetics, University of New Hampshire, Durham, NH 03824 Communicated by John C. Avise, University of Georgia, Athens, GA, March 12, 1999 (received for review December 17, 1998) ABSTRACT Lake Malawi contains a flock of >500 spe- sponsible for speciation, then we expect that sister taxa will cies of cichlid fish that have evolved from a common ancestor frequently differ in color pattern but not morphology. within the last million years. The rapid diversification of this Most attempts to determine the relationships among cichlid group has been attributed to morphological adaptation and to species have used morphological characters, which may be sexual selection, but the relative timing and importance of prone to convergence (8). Molecular sequences normally these mechanisms is not known. A phylogeny of the group provide the independent estimate of phylogeny needed to infer would help identify the role each mechanism has played in the evolutionary mechanisms. The Lake Malawi cichlids, however, evolution of the flock. Previous attempts to reconstruct the are speciating faster than alleles can become fixed within a relationships among these taxa using molecular methods have species (9, 10). The coalescence of mtDNA haplotypes found been frustrated by the persistence of ancestral polymorphisms within populations predates the origin of many species (11). In within species. -
Hohonu Volume 5 (PDF)
HOHONU 2007 VOLUME 5 A JOURNAL OF ACADEMIC WRITING This publication is available in alternate format upon request. TheUniversity of Hawai‘i is an Equal Opportunity Affirmative Action Institution. VOLUME 5 Hohonu 2 0 0 7 Academic Journal University of Hawai‘i at Hilo • Hawai‘i Community College Hohonu is publication funded by University of Hawai‘i at Hilo and Hawai‘i Community College student fees. All production and printing costs are administered by: University of Hawai‘i at Hilo/Hawai‘i Community College Board of Student Publications 200 W. Kawili Street Hilo, Hawai‘i 96720-4091 Phone: (808) 933-8823 Web: www.uhh.hawaii.edu/campuscenter/bosp All rights revert to the witers upon publication. All requests for reproduction and other propositions should be directed to writers. ii d d d d d d d d d d d d d d d d d d d d d d Table of Contents 1............................ A Fish in the Hand is Worth Two on the Net: Don’t Make me Think…different, by Piper Seldon 4..............................................................................................Abortion: Murder-Or Removal of Tissue?, by Dane Inouye 9...............................An Etymology of Four English Words, with Reference to both Grimm’s Law and Verner’s Law by Piper Seldon 11................................Artifacts and Native Burial Rights: Where do We Draw the Line?, by Jacqueline Van Blarcon 14..........................................................................................Ayahuasca: Earth’s Wisdom Revealed, by Jennifer Francisco 16......................................Beak of the Fish: What Cichlid Flocks Reveal About Speciation Processes, by Holly Jessop 26................................................................................. Climatic Effects of the 1815 Eruption of Tambora, by Jacob Smith 33...........................Columnar Joints: An Examination of Features, Formation and Cooling Models, by Mary Mathis 36.................... -
Towards a Regional Information Base for Lake Tanganyika Research
RESEARCH FOR THE MANAGEMENT OF THE FISHERIES ON LAKE GCP/RAF/271/FIN-TD/Ol(En) TANGANYIKA GCP/RAF/271/FIN-TD/01 (En) January 1992 TOWARDS A REGIONAL INFORMATION BASE FOR LAKE TANGANYIKA RESEARCH by J. Eric Reynolds FINNISH INTERNATIONAL DEVELOPMENT AGENCY FOOD AND AGRICULTURE ORGANIZATION OF THE UNITED NATIONS Bujumbura, January 1992 The conclusions and recommendations given in this and other reports in the Research for the Management of the Fisheries on Lake Tanganyika Project series are those considered appropriate at the time of preparation. They may be modified in the light of further knowledge gained at subsequent stages of the Project. The designations employed and the presentation of material in this publication do not imply the expression of any opinion on the part of FAO or FINNIDA concerning the legal status of any country, territory, city or area, or concerning the determination of its frontiers or boundaries. PREFACE The Research for the Management of the Fisheries on Lake Tanganyika project (Tanganyika Research) became fully operational in January 1992. It is executed by the Food and Agriculture organization of the United Nations (FAO) and funded by the Finnish International Development Agency (FINNIDA). This project aims at the determination of the biological basis for fish production on Lake Tanganyika, in order to permit the formulation of a coherent lake-wide fisheries management policy for the four riparian States (Burundi, Tanzania, Zaïre and Zambia). Particular attention will be also given to the reinforcement of the skills and physical facilities of the fisheries research units in all four beneficiary countries as well as to the buildup of effective coordination mechanisms to ensure full collaboration between the Governments concerned. -
Similar Morphologies of Cichlid Fish in Lakes Tanganyika and Malawi Are Due to Convergence Thomas D
MOLECULAR PHYLOGENETICS AND EVOLUTION Vol. 2. No. 2, June. pp. 158-165. 1993 Similar Morphologies of Cichlid Fish in Lakes Tanganyika and Malawi Are Due to Convergence Thomas D. Kocher , * '1 Janet A. Conroy,* Kenneth R. McKaye,* and Jay R. Stauffer* * Department of Zoology, University of New Hampshire, Durham, New Hampshire 03824; t Appalachian Environmental Laboratory, University of Maryland, Frostburg, Maryland 21532; t School of Forest Resources, Pennsylvania State University, University Park, Pennsylvania 16802 Received March 22, 1993; revised June 29, 1993 ancestor for the Lake Victoria cichlid flock (Sage et al., The species flocks of cichlid fishes in the lakes of East 1984; Meyer et al., 1990). The mechanisms by which Africa are the most spectacular example of adaptive so many species have arisen in such a short time, radiation among living vertebrates. Similar highly de within closed lake basins, are a fascinating subject for rived morphologies are found among species in differ research. ent lakes. These similarities have been variously inter A separate, monophyletic origin for the species flock preted either as evidence for migration of ancestral in each lake has often been assumed, partly because species between the lakes, or of striking convergence of the high levels of endemicity found in the cichlid of morphology. To distinguish among these competing fauna, and partly because of the ancient and isolated hypotheses we sequenced a portion of the mitochon history of each lake (Fryer and lies, 1972). The lake drial UNA control region from six pairs of morphologi basins have arisen separately by a gradual lengthen cally similar taxa from Lakes Malawi and Tanganyika. -
Limnological Study of Lake Tanganyika, Africa with Special Emphasis on Piscicultural Potentiality Lambert Niyoyitungiye
Limnological Study of Lake Tanganyika, Africa with Special Emphasis on Piscicultural Potentiality Lambert Niyoyitungiye To cite this version: Lambert Niyoyitungiye. Limnological Study of Lake Tanganyika, Africa with Special Emphasis on Piscicultural Potentiality. Biodiversity and Ecology. Assam University Silchar (Inde), 2019. English. tel-02536191 HAL Id: tel-02536191 https://hal.archives-ouvertes.fr/tel-02536191 Submitted on 9 Apr 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. “LIMNOLOGICAL STUDY OF LAKE TANGANYIKA, AFRICA WITH SPECIAL EMPHASIS ON PISCICULTURAL POTENTIALITY” A THESIS SUBMITTED TO ASSAM UNIVERSITY FOR PARTIAL FULFILLMENT OF THE REQUIREMENT FOR THE DEGREE OF DOCTOR OF PHILOSOPHY IN LIFE SCIENCE AND BIOINFORMATICS By Lambert Niyoyitungiye (Ph.D. Registration No.Ph.D/3038/2016) Department of Life Science and Bioinformatics School of Life Sciences Assam University Silchar - 788011 India Under the Supervision of Dr.Anirudha Giri from Assam University, Silchar & Co-Supervision of Prof. Bhanu Prakash Mishra from Mizoram University, Aizawl Defence date: 17 September, 2019 To Almighty and merciful God & To My beloved parents with love i MEMBERS OF EXAMINATION BOARD iv Contents Niyoyitungiye, 2019 CONTENTS Page Numbers CHAPTER-I INTRODUCTION .............................................................. 1-7 I.1 Background and Motivation of the Study .......................................... -
Frequent Non-Random Shifts in the Temporal Sequence of Developmental Landmark
bioRxiv preprint doi: https://doi.org/10.1101/239954; this version posted April 19, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 Title: Frequent Non-random Shifts in the Temporal Sequence of Developmental Landmark 2 Events during Teleost Evolutionary Diversification 3 4 Running head: Evolution of teleost developmental sequence 5 6 Authors 7 Fumihiro Ito1,2 *, Tomotaka Matsumoto2,3, Tatsumi Hirata2,4 8 1Mammalian Genetics Laboratory, Genetic Strains Research Center, National Institute of 9 Genetics, Mishima 411-8540, Shizuoka, Japan 10 2Department of Genetics, SOKENDAI (The Graduate University for Advanced Studies), 11 Mishima 411-8540, Shizuoka, Japan 12 3Division of Evolutionary Genetics, Department of Population Genetics, National Institute of 13 Genetics, Yata 1111, Mishima, Shizuoka 411-8540, Japan. 14 4Division of Brain Function, National Institute of Genetics, Yata 1111, Mishima 411-8540, 15 Shizuoka, Japan. 16 17 *Correspondence author 18 1 bioRxiv preprint doi: https://doi.org/10.1101/239954; this version posted April 19, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 19 Abstract 20 Morphological transformations can be generated by evolutionary changes in the sequence of 21 developmental events. In this study, we examined the evolutionary dynamics of the 22 developmental sequence on a macroevolutionary scale using the teleost. Using the information 23 from previous reports describing the development of 31 species, we extracted the developmental 24 sequences of 19 landmark events involving the formation of phylogenetically conserved body 25 parts; we then inferred ancestral developmental sequences by two different parsimony-based 26 methods—event-pairing (Jeffery, Bininda-Emonds, Coates & Richardson, 2002a) and continuous 27 analysis (Germain & Laurin, 2009). -
Genetic and Developmental Origins of a Unique Foraging Adaptation in a Lake Malawi Cichlid Genus
Genetic and developmental origins of a unique foraging adaptation in a Lake Malawi cichlid genus Moira R. Conitha, Yinan Hub,c, Andrew J. Conithd, Maura A. Maginnisd, Jacqueline F. Webbb, and R. Craig Albertsond,1 aGraduate Program in Organismic and Evolutionary Biology, University of Massachusetts, Amherst, MA 01003; bDepartment of Biological Sciences, University of Rhode Island, Kingston, RI 02881; cBiology Department, Boston College, Chestnut Hill, MA 02467; and dDepartment of Biology, University of Massachusetts, Amherst, MA 01003 Edited by Hopi E. Hoekstra, HHMI and Harvard University, Cambridge, MA, and approved May 29, 2018 (received for review November 13, 2017) Phenotypic novelties are an important but poorly understood from model organisms, which are selected in part because of their category of morphological diversity. They can provide insights into conserved phenotypes (16, 17). Additionally, novel phenotypes of- the origins of phenotypic variation, but we know relatively little ten have ancient origins and/or occur in lineages that are not about their genetic origins. Cichlid fishes display remarkable diversity amenable to laboratory investigations. Here, we address the origin in craniofacial anatomy, including several novelties. One aspect of this of a novel phenotype by identifying the genetic mechanisms un- variation is a conspicuous, exaggerated snout that has evolved in derlying tissue-level changes of a unique craniofacial morphology in a single Malawi cichlid lineage and is associated with foraging a genus of cichlid from Lake Malawi, Africa. Cichlids are an iconic model system for the study of rapid and specialization and increased ecological success. We examined the – developmental and genetic origins for this phenotype and found that extensive craniofacial diversification (18 20). -
Geography, Ecology, Sympatry, and Male Coloration in the Lake Malawi Cichlid Genus Labeotropheus (Perciformes: Cichlidae)
SAGE-Hindawi Access to Research International Journal of Evolutionary Biology Volume 2011, Article ID 575469, 12 pages doi:10.4061/2011/575469 Research Article One Fish, Two Fish, Red Fish, Blue Fish: Geography, Ecology, Sympatry, and Male Coloration in the Lake Malawi Cichlid Genus Labeotropheus (Perciformes: Cichlidae) Michael J. Pauers Section of Vertebrate Zoology, Milwaukee Public Museum, 800 West Wells Street, Milwaukee, WI 53233, USA Correspondence should be addressed to Michael J. Pauers, [email protected] Received 15 November 2010; Revised 15 February 2011; Accepted 28 March 2011 Academic Editor: Kristina M. Sefc Copyright © 2011 Michael J. Pauers. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. While sexual selection on male coloration has been important in haplochromine cichlid speciation, few studies to date have examined potential environmental influences on color pattern evolution. Data from multiple sources on male nuptial coloration of the Lake Malawi endemic genus Labeotropheus were used to examine the relationship between color patterns and the environments in which these patterns were found. Red- or carotenoid-pigmented males were concentrated in the northwestern portion of Lake Malawi and were also associated with increasing depth. Further, the presence or absence of L. fuelleborni influenced the coloration of L. trewavasae populations; when L. fuelleborni was present, L. trewavasae males were more likely to exhibit some degree of red coloration. While these results support the idea that sexual selection on male coloration is an important factor in the haplochromine speciation, they also underscore the importance of environmental influences on the evolution of color patterns. -
Genome-Wide Microrna Screening in Nile Tilapia Reveals
www.nature.com/scientificreports OPEN Genome-wide microRNA screening in Nile tilapia reveals pervasive isomiRs’ transcription, sex-biased Received: 7 November 2016 Accepted: 15 May 2018 arm switching and increasing Published: xx xx xxxx complexity of expression throughout development Danillo Pinhal 1, Luiz A. Bovolenta2, Simon Moxon3, Arthur C. Oliveira1, Pedro G. Nachtigall1, Marcio L. Acencio4, James G. Patton5, Alexandre W. S. Hilsdorf6, Ney Lemke2 & Cesar Martins 7 MicroRNAs (miRNAs) are key regulators of gene expression in multicellular organisms. The elucidation of miRNA function and evolution depends on the identifcation and characterization of miRNA repertoire of strategic organisms, as the fast-evolving cichlid fshes. Using RNA-seq and comparative genomics we carried out an in-depth report of miRNAs in Nile tilapia (Oreochromis niloticus), an emergent model organism to investigate evo-devo mechanisms. Five hundred known miRNAs and almost one hundred putative novel vertebrate miRNAs have been identifed, many of which seem to be teleost-specifc, cichlid-specifc or tilapia-specifc. Abundant miRNA isoforms (isomiRs) were identifed with modifcations in both 5p and 3p miRNA transcripts. Changes in arm usage (arm switching) of nine miRNAs were detected in early development, adult stage and even between male and female samples. We found an increasing complexity of miRNA expression during ontogenetic development, revealing a remarkable synchronism between the rate of new miRNAs recruitment and morphological changes. Overall, our results enlarge vertebrate miRNA collection and reveal a notable diferential ratio of miRNA arms and isoforms infuenced by sex and developmental life stage, providing a better picture of the evolutionary and spatiotemporal dynamics of miRNAs. -
Food Resources of Lake Tanganyika Sardines Metabarcoding of the Stomach Content of Limnothrissa Miodon and Stolothrissa Tanganicae
FACULTY OF SCIENCE Food resources of Lake Tanganyika sardines Metabarcoding of the stomach content of Limnothrissa miodon and Stolothrissa tanganicae Charlotte HUYGHE Supervisor: Prof. F. Volckaert Thesis presented in Laboratory of Biodiversity and Evolutionary Genomics fulfillment of the requirements Mentor: E. De Keyzer for the degree of Master of Science Laboratory of Biodiversity and Evolutionary in Biology Genomics Academic year 2018-2019 © Copyright by KU Leuven Without written permission of the promotors and the authors it is forbidden to reproduce or adapt in any form or by any means any part of this publication. Requests for obtaining the right to reproduce or utilize parts of this publication should be addressed to KU Leuven, Faculteit Wetenschappen, Geel Huis, Kasteelpark Arenberg 11 bus 2100, 3001 Leuven (Heverlee), Telephone +32 16 32 14 01. A written permission of the promotor is also required to use the methods, products, schematics and programs described in this work for industrial or commercial use, and for submitting this publication in scientific contests. i ii Acknowledgments First of all, I would like to thank my promotor Filip for giving me this opportunity and guiding me through the thesis. A very special thanks to my supervisor Els for helping and guiding me during every aspect of my thesis, from the sampling nights in the middle of Lake Tanganyika to the last review of my master thesis. Also a special thanks to Franz who helped me during the lab work and statistics but also guided me throughout the thesis. I am very grateful for all your help and advice during the past year. -
Chromosome Differentiation Patterns During Cichlid Fish Evolution
Poletto et al. BMC Genetics 2010, 11:50 http://www.biomedcentral.com/1471-2156/11/50 RESEARCH ARTICLE Open Access ChromosomeResearch article differentiation patterns during cichlid fish evolution Andréia B Poletto1, Irani A Ferreira1, Diogo C Cabral-de-Mello1, Rafael T Nakajima1, Juliana Mazzuchelli1, Heraldo B Ribeiro1, Paulo C Venere2, Mauro Nirchio3, Thomas D Kocher4 and Cesar Martins*1 Abstract Background: Cichlid fishes have been the subject of increasing scientific interest because of their rapid adaptive radiation which has led to an extensive ecological diversity and their enormous importance to tropical and subtropical aquaculture. To increase our understanding of chromosome evolution among cichlid species, karyotypes of one Asian, 22 African, and 30 South American cichlid species were investigated, and chromosomal data of the family was reviewed. Results: Although there is extensive variation in the karyotypes of cichlid fishes (from 2n = 32 to 2n = 60 chromosomes), the modal chromosome number for South American species was 2n = 48 and the modal number for the African ones was 2n = 44. The only Asian species analyzed, Etroplus maculatus, was observed to have 46 chromosomes. The presence of one or two macro B chromosomes was detected in two African species. The cytogenetic mapping of 18S ribosomal RNA (18S rRNA) gene revealed a variable number of clusters among species varying from two to six. Conclusions: The karyotype diversification of cichlids seems to have occurred through several chromosomal rearrangements involving fissions, fusions and inversions. It was possible to identify karyotype markers for the subfamilies Pseudocrenilabrinae (African) and Cichlinae (American). The karyotype analyses did not clarify the phylogenetic relationship among the Cichlinae tribes. -
The Fish Eye View: Are Cichlids Conspicuous?
2243 The Journal of Experimental Biology 213, 2243-2255 © 2010. Published by The Company of Biologists Ltd doi:10.1242/jeb.037671 The fish eye view: are cichlids conspicuous? Brian E. Dalton1, Thomas W. Cronin1, N. Justin Marshall2 and Karen L. Carleton3,* 1Department of Biology, University of Maryland, Baltimore County, MD 21250, USA, 2Queensland Brain Institute, The University of Queensland, Brisbane 4072, Australia and 3Department of Biology, University of Maryland, College Park, MD 20742, USA *Author for correspondence ([email protected]) SUMMARY The extent of animal colouration is determined by an interplay between natural and sexual selection. Both forces probably shape colouration in the speciose, rock-dwelling cichlids of Lake Malawi. Sexual selection is thought to drive male colouration, overcoming natural selection to create conspicuous colour patterns via female mate choice and male–male competition. However, natural selection should make female cichlids cryptic because they mouthbrood their young. We hypothesize that as a result of both sexual and natural selection, males will have colours that are more conspicuous than female colours. Cichlid spectral sensitivity, especially in the ultraviolet, probably influences how colours appear to them. Here we use simple models of the trichromatic colour space of cichlid visual systems to compare the conspicuousness of male and female nuptial colours of nine species. Conspicuousness of colours was evaluated as their Euclidian distance in colour space from environmental backgrounds and from other colours on the same fish. We find in six of the nine species that breeding males have colours that are statistically more conspicuous than female colours. These colours contrast strongly with each other or with the backgrounds, and they fall within a range of spectra best transmitted in the habitat.