Xylose: Absorption, Fermentation, and Post-Absorptive Metabolism in The
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Proteome Analysis of Xylose Metabolism in Rhodotorula Toruloides During Lipid Production Ievgeniia A
Tiukova et al. Biotechnol Biofuels (2019) 12:137 https://doi.org/10.1186/s13068-019-1478-8 Biotechnology for Biofuels RESEARCH Open Access Proteome analysis of xylose metabolism in Rhodotorula toruloides during lipid production Ievgeniia A. Tiukova1,2* , Jule Brandenburg2, Johanna Blomqvist2,3, Sabine Sampels2, Nils Mikkelsen2, Morten Skaugen4, Magnus Ø. Arntzen4, Jens Nielsen1, Mats Sandgren2 and Eduard J. Kerkhoven1 Abstract Background: Rhodotorula toruloides is a promising platform organism for production of lipids from lignocellulosic substrates. Little is known about the metabolic aspects of lipid production from the lignocellolosic sugar xylose by oleaginous yeasts in general and R. toruloides in particular. This study presents the frst proteome analysis of the metabolism of R. toruloides during conversion of xylose to lipids. Results: Rhodotorula toruloides cultivated on either glucose or xylose was subjected to comparative analysis of its growth dynamics, lipid composition, fatty acid profles and proteome. The maximum growth and sugar uptake rate of glucose-grown R. toruloides cells were almost twice that of xylose-grown cells. Cultivation on xylose medium resulted in a lower fnal biomass yield although fnal cellular lipid content was similar between glucose- and xylose-grown cells. Analysis of lipid classes revealed the presence of monoacylglycerol in the early exponential growth phase as well as a high proportion of free fatty acids. Carbon source-specifc changes in lipid profles were only observed at early exponential growth phase, where C18 fatty acids were more saturated in xylose-grown cells. Proteins involved in sugar transport, initial steps of xylose assimilation and NADPH regeneration were among the proteins whose levels increased the most in xylose-grown cells across all time points. -
Fermentation of Glucose and Xylose to Hydrogen in the Presence of Long Chain Fatty Acids
University of Windsor Scholarship at UWindsor Electronic Theses and Dissertations Theses, Dissertations, and Major Papers 2009 Fermentation of Glucose and Xylose to Hydrogen in the Presence of Long Chain Fatty Acids Stephen Reaume University of Windsor Follow this and additional works at: https://scholar.uwindsor.ca/etd Recommended Citation Reaume, Stephen, "Fermentation of Glucose and Xylose to Hydrogen in the Presence of Long Chain Fatty Acids" (2009). Electronic Theses and Dissertations. 92. https://scholar.uwindsor.ca/etd/92 This online database contains the full-text of PhD dissertations and Masters’ theses of University of Windsor students from 1954 forward. These documents are made available for personal study and research purposes only, in accordance with the Canadian Copyright Act and the Creative Commons license—CC BY-NC-ND (Attribution, Non-Commercial, No Derivative Works). Under this license, works must always be attributed to the copyright holder (original author), cannot be used for any commercial purposes, and may not be altered. Any other use would require the permission of the copyright holder. Students may inquire about withdrawing their dissertation and/or thesis from this database. For additional inquiries, please contact the repository administrator via email ([email protected]) or by telephone at 519-253-3000ext. 3208. Fermentation of Glucose and Xylose to Hydrogen in the Presence of Long Chain Fatty Acids by Stephen Reaume A Thesis Submitted to the Faculty of Graduate Studies through the Environmental Engineering Program in Partial Fulfillment of the Requirements for the Degree of Master of Applied Science at the University of Windsor Windsor, Ontario, Canada 2009 © 2009 Stephen Reaume AUTHORS DECLARATION OF ORIGINALITY I hereby certify that I am the sole author of this thesis and that no part of this thesis has been published or submitted for publication. -
Acute and Chronic Effects of Dietary Lactose in Adult Rats Are Not Explained by Residual Intestinal Lactase Activity
Nutrients 2015, 7, 5542-5555; doi:10.3390/nu7075237 OPEN ACCESS nutrients ISSN 2072-6643 www.mdpi.com/journal/nutrients Article Acute and Chronic Effects of Dietary Lactose in Adult Rats Are not Explained by Residual Intestinal Lactase Activity Bert J. M. van de Heijning *, Diane Kegler, Lidewij Schipper, Eline Voogd, Annemarie Oosting and Eline M. van der Beek Danone Nutricia Research, PO Box 80141, TC Utrecht 3508, The Netherlands; E-Mails: [email protected] (D.K.); [email protected] (L.S.); [email protected] (E.V.); [email protected] (A.O.); [email protected] (E.M.B.) * Author to whom correspondence should be addressed; E-Mail: [email protected]; Tel.: +31-30-2095-000. Received: 5 June 2015 / Accepted: 30 June 2015 / Published: 8 July 2015 Abstract: Neonatal rats have a high intestinal lactase activity, which declines around weaning. Yet, the effects of lactose-containing products are often studied in adult animals. This report is on the residual, post-weaning lactase activity and on the short- and long-term effects of lactose exposure in adult rats. Acutely, the postprandial plasma response to increasing doses of lactose was studied, and chronically, the effects of a 30% lactose diet fed from postnatal (PN) Day 15 onwards were evaluated. Intestinal lactase activity, as assessed both in vivo and in vitro, was compared between both test methods and diet groups (lactose vs. control). A 50%–75% decreased digestive capability towards lactose was observed from weaning into adulthood. Instillation of lactose in adult rats showed disproportionally low increases in plasma glucose levels and did not elicit an insulin response. -
Xylose Fermentation to Ethanol by Schizosaccharomyces Pombe Clones with Xylose Isomerase Gene." Biotechnology Letters (8:4); Pp
NREL!TP-421-4944 • UC Category: 246 • DE93000067 l I Xylose Fermenta to Ethanol: A R ew '.) i I, -- , ) )I' J. D. McMillan I ' J.( .!i �/ .6' ....� .T u�.•ls:l ., �-- • National Renewable Energy Laboratory II 'J 1617 Cole Boulevard Golden, Colorado 80401-3393 A Division of Midwest Research Institute Operated for the U.S. Department of Energy under Contract No. DE-AC02-83CH10093 Prepared under task no. BF223732 January 1993 NOTICE This report was prepared as an account of work sponsored by an agency of the United States government. Neither the United States government nor any agency thereof, nor any of their employees, makes any warranty, express or implied, or assumes any legal liability or responsibility for the accuracy, com pleteness, or usefulness of any information, apparatus, product, or process disclosed, or represents that its use would not infringe privately owned rights. Reference herein to any specific commercial product, process, or service by trade name, trademark, manufacturer, or otherwise does not necessarily con stitute or imply its endorsement, recommendation, or favoring by the United States government or any agency thereof. The views and opinions of authors expressed herein do not necessarily state or reflect those of the United States government or any agency thereof. Printed in the United States of America Available from: National Technical Information Service U.S. Department of Commerce 5285 Port Royal Road Springfield, VA22161 Price: Microfiche A01 Printed Copy A03 Codes are used for pricing all publications. The code is determined by the number of pages in the publication. Information pertaining to the pricing codes can be found in the current issue of the following publications which are generally available in most libraries: Energy Research Abstracts (ERA); Govern ment Reports Announcements and Index ( GRA and I); Scientific and Technical Abstract Reports(STAR); and publication NTIS-PR-360 available from NTIS at the above address. -
Enhanced Trehalose Production Improves Growth of Escherichia Coli Under Osmotic Stress† J
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, July 2005, p. 3761–3769 Vol. 71, No. 7 0099-2240/05/$08.00ϩ0 doi:10.1128/AEM.71.7.3761–3769.2005 Copyright © 2005, American Society for Microbiology. All Rights Reserved. Enhanced Trehalose Production Improves Growth of Escherichia coli under Osmotic Stress† J. E. Purvis, L. P. Yomano, and L. O. Ingram* Department of Microbiology and Cell Science, Box 110700, University of Florida, Gainesville, Florida 32611 Downloaded from Received 7 July 2004/Accepted 9 January 2005 The biosynthesis of trehalose has been previously shown to serve as an important osmoprotectant and stress protectant in Escherichia coli. Our results indicate that overproduction of trehalose (integrated lacI-Ptac-otsBA) above the level produced by the native regulatory system can be used to increase the growth of E. coli in M9-2% glucose medium at 37°C to 41°C and to increase growth at 37°C in the presence of a variety of osmotic-stress agents (hexose sugars, inorganic salts, and pyruvate). Smaller improvements were noted with xylose and some fermentation products (ethanol and pyruvate). Based on these results, overproduction of trehalose may be a useful trait to include in biocatalysts engineered for commodity chemicals. http://aem.asm.org/ Bacteria have a remarkable capacity for adaptation to envi- and lignocellulose (6, 7, 10, 28, 30, 31, 32, 45). Biobased pro- ronmental stress (39). A part of this defense system involves duction of these renewable chemicals would be facilitated by the intracellular accumulation of protective compounds that improved growth under thermal stress and by increased toler- shield macromolecules and membranes from damage (9, 24). -
Cofermentation of Glucose, Xylose and Arabinose by Genomic DNA
GenomicCopyright © DNA–Integrated2002 by Humana Press Zymomonas Inc. mobilis 885 All rights of any nature whatsoever reserved. 0273-2289/02/98-100/0885/$13.50 Cofermentation of Glucose, Xylose, and Arabinose by Genomic DNA–Integrated Xylose/Arabinose Fermenting Strain of Zymomonas mobilis AX101 ALI MOHAGHEGHI,* KENT EVANS, YAT-CHEN CHOU, AND MIN ZHANG Biotechnology Division for Fuels and Chemicals, National Renewable Energy Laboratory, 1617 Cole Boulevard, Golden, CO 80401, E-mail: [email protected] Abstract Cofermentation of glucose, xylose, and arabinose is critical for complete bioconversion of lignocellulosic biomass, such as agricultural residues and herbaceous energy crops, to ethanol. We have previously developed a plas- mid-bearing strain of Zymomonas mobilis (206C[pZB301]) capable of cofer- menting glucose, xylose, and arabinose to ethanol. To enhance its genetic stability, several genomic DNA–integrated strains of Z. mobilis have been developed through the insertion of all seven genes necessay for xylose and arabinose fermentation into the Zymomonas genome. From all the integrants developed, four were selected for further evaluation. The integrants were tested for stability by repeated transfer in a nonselective medium (containing only glucose). Based on the stability test, one of the integrants (AX101) was selected for further evaluation. A series of batch and continuous fermenta- tions was designed to evaluate the cofermentation of glucose, xylose, and L-arabinose with the strain AX101. The pH range of study was 4.5, 5.0, and 5.5 at 30°C. The cofermentation process yield was about 84%, which is about the same as that of plasmid-bearing strain 206C(pZB301). Although cofer- mentation of all three sugars was achieved, there was a preferential order of sugar utilization: glucose first, then xylose, and arabinose last. -
Production of Fuels and Chemicals from Xylose by Engineered Saccharomyces Cerevisiae: a Review and Perspective Suryang Kwak and Yong‑Su Jin*
Kwak and Jin Microb Cell Fact (2017) 16:82 DOI 10.1186/s12934-017-0694-9 Microbial Cell Factories REVIEW Open Access Production of fuels and chemicals from xylose by engineered Saccharomyces cerevisiae: a review and perspective Suryang Kwak and Yong‑Su Jin* Abstract Efcient xylose utilization is one of the most important pre-requisites for developing an economic microbial conver‑ sion process of terrestrial lignocellulosic biomass into biofuels and biochemicals. A robust ethanol producing yeast Saccharomyces cerevisiae has been engineered with heterologous xylose assimilation pathways. A two-step oxi‑ doreductase pathway consisting of NAD(P)H-linked xylose reductase and NAD +-linked xylitol dehydrogenase, and one-step isomerase pathway using xylose isomerase have been employed to enable xylose assimilation in engi‑ neered S. cerevisiae. However, the resulting engineered yeast exhibited inefcient and slow xylose fermentation. In order to improve the yield and productivity of xylose fermentation, expression levels of xylose assimilation pathway enzymes and their kinetic properties have been optimized, and additional optimizations of endogenous or heter‑ ologous metabolisms have been achieved. These eforts have led to the development of engineered yeast strains ready for the commercialization of cellulosic bioethanol. Interestingly, xylose metabolism by engineered yeast was preferably respiratory rather than fermentative as in glucose metabolism, suggesting that xylose can serve as a desir‑ able carbon source capable of bypassing metabolic barriers exerted by glucose repression. Accordingly, engineered yeasts showed superior production of valuable metabolites derived from cytosolic acetyl-CoA and pyruvate, such as 1-hexadecanol and lactic acid, when the xylose assimilation pathway and target synthetic pathways were optimized in an adequate manner. -
The Utilization of Sugars by Fungi Virgil Greene Lilly
West Virginia Agricultural and Forestry Experiment Davis College of Agriculture, Natural Resources Station Bulletins And Design 1-1-1953 The utilization of sugars by fungi Virgil Greene Lilly H. L. Barnett Follow this and additional works at: https://researchrepository.wvu.edu/ wv_agricultural_and_forestry_experiment_station_bulletins Digital Commons Citation Lilly, Virgil Greene and Barnett, H. L., "The utilization of sugars by fungi" (1953). West Virginia Agricultural and Forestry Experiment Station Bulletins. 362T. https://researchrepository.wvu.edu/wv_agricultural_and_forestry_experiment_station_bulletins/629 This Bulletin is brought to you for free and open access by the Davis College of Agriculture, Natural Resources And Design at The Research Repository @ WVU. It has been accepted for inclusion in West Virginia Agricultural and Forestry Experiment Station Bulletins by an authorized administrator of The Research Repository @ WVU. For more information, please contact [email protected]. Digitized by the Internet Archive in 2010 with funding from Lyrasis IVIembers and Sloan Foundation http://www.archive.org/details/utilizationofsug362lill ^ni^igaro mU^ 'wmSS'"""' m^ r^' c t» WES: VIRGINIA UNIVERSITY AGRICULTURAL EXPERIMENT STAl. luiietin I62T 1 June 1953 ; The Utilization of Sugars by Fungi by Virgil Greene Lilly and H. L. Barnett WEST VIRGINIA UNIVERSITY AGRICULTURAL EXPERIMENT STATION ACKNOWLEDGMENT The authors wish to thank research assist- ants Miss Janet Posey and Mrs. Betsy Morris Waters for their faithful and conscientious help during some of these experiments. THE AUTHORS H. L. Barnett is Mycologist at the West Virginia University Agricultural Experiment Station and Professor of Mycology in the College of Agriculture, Forestry, and Home Economics. Virgil Greene Lilly is Physiol- ogist at the West Virginia University Agricul- tural Experiment Station and Professor of Physiology in the College of Agriculture, Forestry, and Home Economics. -
Metabolic Changes Induced by Deletion of Transcriptional Regulator GCR2 in Xylose- Fermenting Saccharomyces Cerevisiae
microorganisms Article Metabolic Changes Induced by Deletion of Transcriptional Regulator GCR2 in Xylose- Fermenting Saccharomyces cerevisiae Minhye Shin 1 and Soo Rin Kim 2,* 1 Department of Agricultural Biotechnology, Research Institute of Agriculture and Life Science, Seoul National University, Seoul 08826, Korea; [email protected] 2 School of Food Science and Biotechnology, Kyungpook National University, Daegu 41566, Korea * Correspondence: [email protected]; Tel.: +82-53-950-7769 Received: 27 August 2020; Accepted: 25 September 2020; Published: 29 September 2020 Abstract: Glucose repression has been extensively studied in Saccharomyces cerevisiae, including the regulatory systems responsible for efficient catabolism of glucose, the preferred carbon source. However, how these regulatory systems would alter central metabolism if new foreign pathways are introduced is unknown, and the regulatory networks between glycolysis and the pentose phosphate pathway, the two major pathways in central carbon metabolism, have not been systematically investigated. Here we disrupted gcr2, a key transcriptional regulator, in S. cerevisiae strain SR7 engineered to heterologously express the xylose-assimilating pathway, activating genes involved in glycolysis, and evaluated the global metabolic changes. gcr2 deletion reduced cellular growth in glucose but significantly increased growth when xylose was the sole carbon source. Global metabolite profiling revealed differential regulation of yeast metabolism in SR7-gcr2∆, especially carbohydrate and nucleotide metabolism, depending on the carbon source. In glucose, the SR7-gcr2∆ mutant showed overall decreased abundance of metabolites, such as pyruvate and sedoheptulose-7-phosphate, associated with central carbon metabolism including glycolysis and the pentose phosphate pathway. However, SR7-gcr2∆ showed an increase in metabolites abundance (ribulose-5-phosphate, sedoheptulose-7-phosphate, and erythrose-4-phosphate) notably from the pentose phosphate pathway, as well as alteration in global metabolism when compared to SR7. -
Metabolic Engineering for Improved Microbial Pentose Fermentation
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Universidade do Minho: RepositoriUM AUTOPHAGIC PUNCTUM ARTICLE ADDENDUM Bioengineered Bugs 1:6, 1-6; November/December 2010; © 2010 Landes Bioscience Metabolic engineering for improved microbial pentose fermentation Sara Fernandes1 and Patrick Murray2,* 1IBB-Institute for Biotechnology and Bioengineering; Centre of Biological Engineering; Universidade do Minho; Braga Portugal; 2Shannon Applied Biotechnology Centre; Limerick Institute Technology; Limerick Ireland lobal concern over the depletion of yeast species such as Pachysolen sp. and Gfossil fuel reserves, and the detri- Pichia sp., S. cerevisiae does not metabo- mental impact that combustion of these lise the pentose sugars, xylose and arabi- materials has on the environment, is nose, and it was not until the late 1970s focusing attention on initiatives to cre- that the first steps were taken to develop ate sustainable approaches for the pro- methods to engineer pentose metabolism duction and use of biofuels from various in this yeast. The ability of S. cerevisiae in biomass substrates. The development of fermenting lignocellulose hydrolysates has a low-cost, safe and eco-friendly process been demonstrated repeatedly.1 S. cerevi- for the utilisation of renewable resources siae produces ethanol with stoichiometric to generate value-added products with yields from hexose sugars and tolerates a biotechnological potential as well as wide spectrum of inhibitors and elevated robust microorganisms capable of effi- osmotic pressure. For these reasons, it has cient fermentation of all types of sugars been recognised that genetic engineering are essential to underpin the economic of naturally fermenting microorganisms production of biofuels from biomass such as S. -
Levels of Enzymes of the Pentose Phosphate Pathway in Pachysolen Tannophilus Y-2460 and Selected Mutants
Levels of enzymes of the pentose phosphate pathway in Pachysolen tannophilus Y-2460 and selected mutants Anil H. Lachke Division of Biochemical Sciences, National Chemical Laboratory, Poona 411008, India and Thomas W. Jeffries US Department of Agriculture, Forest Service, Forest Products Laboratory, One Gifford Pinchot Drive, Madison, WI 53705-2398, USA (Received 24 September 1985; revised 6 January 1986) The compositions of intracellular pentose phosphate pathway enzymes have been examined in mutants of Pachysolen tannophilus NRRL Y-2460 which possessed enhanced D-xylose fermentation rates. The levels of oxidoreductive enzymes involved in converting D-xylose to D-xylulose via xylitol were 1.5-14.7-fold higher in mutants than in the parent. These enzymes were still under inductive control by D-xylose in the mutants. The D-xylose reductase activity (EC 1.1.1.21) which catalyses the conversion of D-xylose to xylitol was supported with either NADPH or NADH as coenzyme in all the mutant strains. Other enzyme specific activities that generally increased were: xylitol dehydro- genase (EC 1.1.1.9), 1.2-1.6-fold; glucose-6-phosphate dehydrogenase (EC 1.1.1.49), 1.9-2.6-fold; D-xylulose-5-phosphate phosphoketolase (EC 4.1.2.9), 1.2-2.61fold; and alcohol dehydrogenase (EC 1.1.1.1). 1.5-2.7-fold. The increase of enzymatic activities, 5.3-10.3-fold, occurring in D- xylulokinase (EC 2.7.1.17), suggested a pivotal role for this enzyme in utilization of D-xylose by these mutants. The best ethanol-producing mutant showed the highest ratio of NADH- to NADPH- linked D-xyloSe reductase activity and high levels of all other pentose phosphate pathway enzymes assayed. -
Dynamic Metabolomics Differentiates Between Carbon and Energy
Bergdahl et al. Biotechnology for Biofuels 2012, 5:34 http://www.biotechnologyforbiofuels.com/content/5/1/34 RESEARCH Open Access Dynamic metabolomics differentiates between carbon and energy starvation in recombinant Saccharomyces cerevisiae fermenting xylose Basti Bergdahl1*, Dominik Heer2, Uwe Sauer2, Bärbel Hahn-Hägerdal1 and Ed WJ van Niel1 Abstract Background: The concerted effects of changes in gene expression due to changes in the environment are ultimately reflected in the metabolome. Dynamics of metabolite concentrations under a certain condition can therefore give a description of the cellular state with a high degree of functional information. We used this potential to evaluate the metabolic status of two recombinant strains of Saccharomyces cerevisiae during anaerobic batch fermentation of a glucose/xylose mixture. Two isogenic strains were studied, differing only in the pathways used for xylose assimilation: the oxidoreductive pathway with xylose reductase (XR) and xylitol dehydrogenase (XDH) or the isomerization pathway with xylose isomerase (XI). The isogenic relationship between the two strains ascertains that the observed responses are a result of the particular xylose pathway and not due to unknown changes in regulatory systems. An increased understanding of the physiological state of these strains is important for further development of efficient pentose-utilizing strains for bioethanol production. Results: Using LC-MS/MS we determined the dynamics in the concentrations of intracellular metabolites in central carbon metabolism, nine amino acids, the purine nucleotides and redox cofactors. The general response to the transition from glucose to xylose was increased concentrations of amino acids and TCA-cycle intermediates, and decreased concentrations of sugar phosphates and redox cofactors.