24193724.Pdf
Total Page:16
File Type:pdf, Size:1020Kb
mycoscience 57 (2016) 393e399 Available online at www.sciencedirect.com journal homepage: www.elsevier.com/locate/myc Short communication Tuber shidianense and T. calosporum, two new truffle species from southwest China * Shan-Ping Wan a,b, Xiang-Hua Wang c, Yi Zheng a, Fu-Qiang Yu b, a College of Resource and Environment, Yunnan Agricultural University, Kunming 650100, PR China b Key Laboratory of Economic Plants and Biotechnology, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, PR China c Key Laboratory of Biodiversity and Biogeography, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, PR China article info abstract Article history: Based on morphological and molecular phylogenetic analyses, two new species, Tuber Received 26 June 2015 shidianense and T. calosporum, are described from southwest China. They are clearly Received in revised form different from any other taxon in the genus Tuber. Tuber shidianense belongs to the 8 December 2015 Puberulum group. It is characterized by whitish ascomata, pseudoparenchymatous Accepted 22 June 2016 peridium and globose ascospores with deep alveolar ornamentation. Tuber calosporum be- Available online 11 August 2016 longs to the Macrosporum group. It is recognized by yellow and brown ascomata, pros- enchymatous peridium and large elliptic ascospores with low alveolate wall. Phylogenetic Keywords: relationships and morphological differences between these two new species and their Macrosporum group related species are discussed. Phylogenetic analysis © 2016 Published by Elsevier B.V. on behalf of The Mycological Society of Japan. Puberulum group Taxonomy Tuber F.H. Wigg. (Ascomycota, Pezizales) is one of the most studies (Garcı´a-Montero et al. 2010). Recently, a large number important hypogeous fungi in terms of both economic and of new Tuber species, a large proportion of which are white ecological value. Some Tuber species, such as T. magnatum truffles, have been discovered and described by Chinese my- Pico, T. melanosporum Vittad., T. aestivum Vittad. and T. indicum cologists from southwest China (Fan et al. 2011, 2012a,b,c,d, Cooke & Massee, have high culinary value because of their 2013, 2014, 2016a,b; Fan and Cao 2012; Deng et al 2013; Fan unique scent. Tuber species form symbiotic associations with and Yue 2013; Li et al 2014). Morphological observations, in angiosperms and gymnosperms and play an important role in some cases with sequence analyses of the nuclear ribosomal ecosystems (Pomerico et al 2006; Wang and Liu 2009; Trappe internal transcribed spacer (ITS), showed that these species and Claridge 2010). In China, new species of the genus Tuber mainly belong to the Puberulum group. The others include were first reported in the 1980s (Liu 1985). In 2010, Garcı´a- members of the Latisporum, Rufum, Maculatum, Macro- Montero characterized 16 Chinese Tuber taxa by locating and sporum and Melanosporum groups. In this study, we describe analyzing the available scientific information from previous two new Tuber species belonging to the Puberulum and * Corresponding author. Tel./fax: þ86 0871 65223085. E-mail address: [email protected] (F.-Q. Yu). http://dx.doi.org/10.1016/j.myc.2016.06.007 1340-3540/© 2016 Published by Elsevier B.V. on behalf of The Mycological Society of Japan. 394 mycoscience 57 (2016) 393e399 Macrosporum groups. Morphological comparisons with Criterion (AIC) (Akaike 1974) implemented by MrModeltest closely related taxa are presented, and their molecular v.2.3 (Nylander 2004). Bayesian analysis was carried out using phylogenetic position in Tuber is examined. the selected model with four chains sampled every 100 gen- Fresh samples were collected from forests of Pinus yunna- erations and run for a total of 2,000,000 generations. The nensis Franch. and a local mushroom market in Yunnan, average standard deviations of split frequencies were less China. Morphological descriptions were based on fresh ma- than 0.01 at the end of the run and ESS (effective sampling terials and microscopic examination on dry material size) values were >200. A majority rule consensus tree was following the methods of Yang and Zhang (2003). Sections built after discarding trees from a 25% burnin. Posterior were made with a razor blade by hand, mounted in a 5% (w/v) probabilities (PPs) were calculated using the sumt command KOH solution and examined under a light microscope (Leica implemented in MrBayes. DM2500, Leica Microsystems, Shanghai, China). For scanning The aligned ITS dataset includes 80 samples and 663 electron microscopy (SEM), spores were scraped from the characters: 257 of ITS1 (complete), 155 of 5.8S (complete) and dried gleba onto doubled-sided tape, which was mounted 251 of ITS2 (complete). The ML analysis resulted in a best tree directly on an SEM stub, coated with gold-palladium, exam- with a likelihood of À3346.27. Bayesian analysis ran for a total ined and photographed with a JEOL, JMS-5600LV SEM (JEOL, of 2,000,000 generations to get convergence. ML and Bayesian Shanghai, China). For evaluation of the range of spore-size, 40 analyses yielded similar tree topologies, and only the tree ascospores each from one specimen of each collection cited inferred from the ML analysis is shown. The result revealed were measured. In the description of the ascospores, the six distinct groups, which covered most of the Chinese col- abbreviation Q represents the range of ratio of spore length to lections (Fig. 1). Phylogenetically, T. shidianense belongs to the spore width calculated for each spore and Qm is the average of Puberulum group and is sister to the subclade containing T. the Q values. The specimens have been deposited at the jinshajiangense L. Fan and T. sinosphaerosporum L. Fan, J.Z. Cao & Herbarium of Cryptogams, Kunming Institute of Botany, Chi- Yu Li (subclade A). This subclade is supported by a BS value of nese Academy of Sciences (KUNeHKAS). 72% and a PP of 0.98. Tuber shidianense is closely related to T. Total DNA was extracted from pieces of dried ascomata jinshajiangense with high BS (90%) and PP (1.0) values. DNA with a modified CTAB procedure (Gardes and Bruns 1993). sequence analysis showed that these three species share a Polymerase chain reactions (PCR) were performed using the 86.9%e88.9% similarity in their ITS sequences. Tuber calo- primer combination ITS1F/ITS4 (White et al 1990; Gardes and sporum belongs to the Macrosporum group and is grouped Bruns 1993). In 25 mL of PCR reaction solution contained 1 mL with T. glabrum L. Fan & S. Feng and T. sinomonosporum J.Z. Cao þ DNA, 1 mL(5mM) of each primers, 2.5 mL10Â buffer (Mg2 plus), & L. Fan with strong support values (BS ¼ 100%, PP ¼ 1.0). ITS m m m 1 L dNTP (1 mM), 0.5 L BSA (0.1%), 0.5 L MgCl2,1UofTaq sequence analysis showed that these three species share a DNA polymerase (Takara Tag, Takara Biotechnology, Dalian, 87.2%e89.9% similarity. China). PCR reactions were run as follows: 94 C for 5 min, followed by 35 cycles of 94 C for 30 s, 52 C for 1 min and 72 C Tuber shidianense S.P. Wan, sp. nov. Fig. 2. for 1 min. The final reaction was followed by an extension at MycoBank no.: MB814191. 72 C for 10 min. The PCR products were sent to Sangon Biotech Corporation (Shanghai, China) for purifying and Ascomata whitish and brown, cracked; Dermatocystidia sequencing by using ITS1F/ITS4. dense; Ascospores globose with deep alveolar ornamentation. A total of 78 Tuber ITS rDNA sequences were used for Type: CHINA, Yunnan Province, Shidian County (11. 99E, phylogenetic analysis (Supplementary Table 1), including 2 30. 24N), in humous soil under mixed forest with Pinus yun- sequences of T. shidianense, 4 sequences of T. calosporum and nanensis as dominant species, at about 2335 m, 3 Nov 2014, 72 sequences were downloaded from GenBank. Two se- (holotype, wsp256, HKAS88770). quences derived from Choiromyces meandriformis Vittad. Gene sequences ex holotype: KT444595 (ITS); ex paratype: (HM485330 and HM485331) were selected and used as out- KT444596 (ITS). groups (Fig. 1). The matrix has been deposited in TreeBASE Etymology: In reference to the location of the type under the accession number S19191. collection. Sequences were edited and assembled using SeqMan II Ascomata (Fig. 2A) 0.5e2 cm in diam, subglobose or oval- (Larsson and Sundberg 2011). Alignment was performed using shaped, firm and occasionally cracked. Peridium densely pu- the online version of the multiple sequence alignment pro- bescent, whitish, ecru to pale yellowish-brown when fresh, gram MAFFT v7 (Katoh and Toh 2008), applying the L-INS-I becoming brown when dried. Gleba solid, pale gray when strategy, and the alignments were manually adjusted in Bio- young, marbled with white veins. Odor pleasant. Taste not Edit. The phylogenetic relationships of taxa were inferred recorded. using maximum likelihood (ML) and Bayesian inference (BI). Peridium 180e340 mm thick, two layers, the outer layer ML analysis on the ITS dataset was performed in RAxML 100e270 mm thick, pseudoparenchymatous (Fig. 2C, E), v.7.2.6 (Stamatakis 2006) and the GTR þ GAMMA substitution composed of big, subglobose to subangular cells, model with parameters unlinked. ML bootstrap (BS) replicates 6.8e37 Â 8e29 mm, pale yellow or hyaline; the inner layer (1000) were computed in RAxML with a rapid bootstrap anal- 39e260 mm thick, composed of intricately interwoven, hyaline ysis and search for the best-scoring ML tree. Bayesian analysis and thin-walled hyphae, 1.5e5 mm in diam. Dermatocystidia, on the ITS dataset was performed in MrBayes v.3.1.2 (Ronquist radial, up to 75 mm long, 7 mm in diam, dense, multi-septate, and Huelsenbeck 2003) and the GTR þ I þ G model was tapered, hyaline to whitish (Fig. 2E). Gleba composed of hya- selected as the best model under the Akaike Information line, interwoven, thin-walled hyphae, 1.5e5 mm broad at the mycoscience 57 (2016) 393e399 395 100/1.000/1.0 T.T.