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Insights Into the Ecology and Genetics of Lichens with a Cyanobacterial Photobiont
Insights into the Ecology and Genetics of Lichens with a Cyanobacterial Photobiont Katja Fedrowitz Faculty of Natural Resources and Agricultural Sciences Department of Ecology Uppsala Doctoral Thesis Swedish University of Agricultural Sciences Uppsala 2011 Acta Universitatis agriculturae Sueciae 2011:96 Cover: Lobaria pulmonaria, Nephroma bellum, and fallen bark in an old-growth forest in Finland with Populus tremula. Part of the tRNALeu (UAA) sequence in an alignment. (photos: K. Fedrowitz) ISSN 1652-6880 ISBN 978-91-576-7640-5 © 2011 Katja Fedrowitz, Uppsala Print: SLU Service/Repro, Uppsala 2011 Insights into the Ecology and Genetics of Lichens with a Cyanobacterial Photobiont Abstract Nature conservation requires an in-depth understanding of the ecological processes that influence species persistence in the different phases of a species life. In lichens, these phases comprise dispersal, establishment, and growth. This thesis aimed at increasing the knowledge on epiphytic cyanolichens by studying different aspects linked to these life stages, including species colonization extinction dynamics, survival and vitality of lichen transplants, and the genetic symbiont diversity in the genus Nephroma. Paper I reveals that local colonizations, stochastic, and deterministic extinctions occur in several epiphytic macrolichens. Species habitat-tracking metapopulation dynamics could partly be explained by habitat quality and size, spatial connectivity, and possibly facilitation by photobiont sharing. Simulations of species future persistence suggest stand-level extinction risk for some infrequent sexually dispersed species, especially when assuming low tree numbers and observed tree fall rates. Forestry practices influence the natural occurrence of species, and retention of trees at logging is one measure to maintain biodiversity. However, their long-term benefit for biodiversity is still discussed. -
Pannariaceae Generic Taxonomy LL Ver. 27.9.2013.Docx
http://www.diva-portal.org Preprint This is the submitted version of a paper published in The Lichenologist. Citation for the original published paper (version of record): Ekman, S. (2014) Extended phylogeny and a revised generic classification of the Pannariaceae (Peltigerales, Ascomycota). The Lichenologist, 46: 627-656 http://dx.doi.org/10.1017/S002428291400019X Access to the published version may require subscription. N.B. When citing this work, cite the original published paper. Permanent link to this version: http://urn.kb.se/resolve?urn=urn:nbn:se:nrm:diva-943 Extended phylogeny and a revised generic classification of the Pannariaceae (Peltigerales, Ascomycota) Stefan EKMAN, Mats WEDIN, Louise LINDBLOM & Per M. JØRGENSEN S. Ekman (corresponding author): Museum of Evolution, Uppsala University, Norbyvägen 16, SE –75236 Uppsala, Sweden. Email: [email protected] M. Wedin: Dept. of Botany, Swedish Museum of Natural History, Box 50007, SE –10405 Stockholm, Sweden. L. Lindblom and P. M. Jørgensen: Dept. of Natural History, University Museum of Bergen, Box 7800, NO –5020 Bergen, Norway. Abstract: We estimated phylogeny in the lichen-forming ascomycete family Pannariaceae. We specifically modelled spatial (across-site) heterogeneity in nucleotide frequencies, as models not incorporating this heterogeneity were found to be inadequate for our data. Model adequacy was measured here as the ability of the model to reconstruct nucleotide diversity per site in the original sequence data. A potential non-orthologue in the internal transcribed spacer region (ITS) of Degelia plumbea was observed. We propose a revised generic classification for the Pannariaceae, accepting 30 genera, based on our phylogeny, previously published phylogenies, as well as morphological and chemical data available. -
Revisions of British and Irish Lichens
Revisions of British and Irish Lichens Volume 9 February 2021 Peltigerales: Pannariaceae Cover image: Pectenia atlantica, on bark of Fraxinus excelsior, Strath Croe, Kintail, Wester Ross. Revisions of British and Irish Lichens is a free-to-access serial publication under the auspices of the British Lichen Society, that charts changes in our understanding of the lichens and lichenicolous fungi of Great Britain and Ireland. Each volume will be devoted to a particular family (or group of families), and will include descriptions, keys, habitat and distribution data for all the species included. The maps are based on information from the BLS Lichen Database, that also includes data from the historical Mapping Scheme and the Lichen Ireland database. The choice of subject for each volume will depend on the extent of changes in classification for the families concerned, and the number of newly recognized species since previous treatments. To date, accounts of lichens from our region have been published in book form. However, the time taken to compile new printed editions of the entire lichen biota of Britain and Ireland is extensive, and many parts are out-of-date even as they are published. Issuing updates as a serial electronic publication means that important changes in understanding of our lichens can be made available with a shorter delay. The accounts may also be compiled at intervals into complete printed accounts, as new editions of the Lichens of Great Britain and Ireland. Editorial Board Dr P.F. Cannon (Department of Taxonomy & Biodiversity, Royal Botanic Gardens, Kew, Surrey TW9 3AB, UK). Dr A. Aptroot (Laboratório de Botânica/Liquenologia, Instituto de Biociências, Universidade Federal de Mato Grosso do Sul, Avenida Costa e Silva s/n, Bairro Universitário, CEP 79070-900, Campo Grande, MS, Brazil) Dr B.J. -
Lichens and Associated Fungi from Glacier Bay National Park, Alaska
The Lichenologist (2020), 52,61–181 doi:10.1017/S0024282920000079 Standard Paper Lichens and associated fungi from Glacier Bay National Park, Alaska Toby Spribille1,2,3 , Alan M. Fryday4 , Sergio Pérez-Ortega5 , Måns Svensson6, Tor Tønsberg7, Stefan Ekman6 , Håkon Holien8,9, Philipp Resl10 , Kevin Schneider11, Edith Stabentheiner2, Holger Thüs12,13 , Jan Vondrák14,15 and Lewis Sharman16 1Department of Biological Sciences, CW405, University of Alberta, Edmonton, Alberta T6G 2R3, Canada; 2Department of Plant Sciences, Institute of Biology, University of Graz, NAWI Graz, Holteigasse 6, 8010 Graz, Austria; 3Division of Biological Sciences, University of Montana, 32 Campus Drive, Missoula, Montana 59812, USA; 4Herbarium, Department of Plant Biology, Michigan State University, East Lansing, Michigan 48824, USA; 5Real Jardín Botánico (CSIC), Departamento de Micología, Calle Claudio Moyano 1, E-28014 Madrid, Spain; 6Museum of Evolution, Uppsala University, Norbyvägen 16, SE-75236 Uppsala, Sweden; 7Department of Natural History, University Museum of Bergen Allégt. 41, P.O. Box 7800, N-5020 Bergen, Norway; 8Faculty of Bioscience and Aquaculture, Nord University, Box 2501, NO-7729 Steinkjer, Norway; 9NTNU University Museum, Norwegian University of Science and Technology, NO-7491 Trondheim, Norway; 10Faculty of Biology, Department I, Systematic Botany and Mycology, University of Munich (LMU), Menzinger Straße 67, 80638 München, Germany; 11Institute of Biodiversity, Animal Health and Comparative Medicine, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow G12 8QQ, UK; 12Botany Department, State Museum of Natural History Stuttgart, Rosenstein 1, 70191 Stuttgart, Germany; 13Natural History Museum, Cromwell Road, London SW7 5BD, UK; 14Institute of Botany of the Czech Academy of Sciences, Zámek 1, 252 43 Průhonice, Czech Republic; 15Department of Botany, Faculty of Science, University of South Bohemia, Branišovská 1760, CZ-370 05 České Budějovice, Czech Republic and 16Glacier Bay National Park & Preserve, P.O. -
<I> Lecanoromycetes</I> of Lichenicolous Fungi Associated With
Persoonia 39, 2017: 91–117 ISSN (Online) 1878-9080 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE https://doi.org/10.3767/persoonia.2017.39.05 Phylogenetic placement within Lecanoromycetes of lichenicolous fungi associated with Cladonia and some other genera R. Pino-Bodas1,2, M.P. Zhurbenko3, S. Stenroos1 Key words Abstract Though most of the lichenicolous fungi belong to the Ascomycetes, their phylogenetic placement based on molecular data is lacking for numerous species. In this study the phylogenetic placement of 19 species of cladoniicolous species lichenicolous fungi was determined using four loci (LSU rDNA, SSU rDNA, ITS rDNA and mtSSU). The phylogenetic Pilocarpaceae analyses revealed that the studied lichenicolous fungi are widespread across the phylogeny of Lecanoromycetes. Protothelenellaceae One species is placed in Acarosporales, Sarcogyne sphaerospora; five species in Dactylosporaceae, Dactylo Scutula cladoniicola spora ahtii, D. deminuta, D. glaucoides, D. parasitica and Dactylospora sp.; four species belong to Lecanorales, Stictidaceae Lichenosticta alcicorniaria, Epicladonia simplex, E. stenospora and Scutula epiblastematica. The genus Epicladonia Stictis cladoniae is polyphyletic and the type E. sandstedei belongs to Leotiomycetes. Phaeopyxis punctum and Bachmanniomyces uncialicola form a well supported clade in the Ostropomycetidae. Epigloea soleiformis is related to Arthrorhaphis and Anzina. Four species are placed in Ostropales, Corticifraga peltigerae, Cryptodiscus epicladonia, C. galaninae and C. cladoniicola -
Opuscula Philolichenum, 6: 87-120. 2009
Opuscula Philolichenum, 6: 87–120. 2009. Lichenicolous fungi and some lichens from the Holarctic 1 MIKHAIL P. ZHURBENKO ABSTRACT. – 102 species of lichenicolous fungi and 23 lichens are reported, mainly from the Russian Arctic. Four new taxa are described: Clypeococcum bisporum (on Cetraria and Flavocetraria), Echinodiscus kozhevnikovii (on Cetraria), Stigmidium hafellneri (on Flavocetraria) and Gypsoplaca macrophylla f. blastidiata. The following lichenicolous fungi are reported for the first time from North America: Monodictys fuliginosa, Stigmidium microcarpum and Trichosphaeria lichenum. The following lichenicolous fungi and lichens are reported as new to Asia: Arthonia almquistii, Arthophacopsis parmeliarum, Cercidospora lobothalliae, Clypeococcum placopsiphilum, Dactylospora cf. aeruginosa, D. frigida, Epicladonia sandstedei, Everniicola flexispora, Hypogymnia fistulosa, Lecanora luteovernalis, Lecanographa rinodinae, Lichenochora mediterraneae, Lichenopeltella peltigericola, Lichenopuccinia poeltii, Lichenosticta alcicornaria, Phoma cytospora, Polycoccum ventosicola, Roselliniopsis gelidaria, R. ventosa, Sclerococcum gelidarum, Scoliciosporum intrusum, Stigmidium croceae, S. mycobilimbiae, S. stygnospilum, S. superpositum, Taeniolella diederichiana, Thelocarpon impressellum and Zwackhiomyces macrosporus. Twenty-eight species are new to Russia, 15 new to the Arctic, five new to Mongolia and nine new to Alaska. Twenty lichen genera and 31 species are new hosts for various species of lichenicolous fungi. INTRODUCTION This paper deals -
3. Canary Islands and the Laurel Forest 13
The Laurel Forest An Example for Biodiversity Hotspots threatened by Human Impact and Global Change Dissertation 2014 Dissertation submitted to the Combined Faculties for the Natural Sciences and for Mathematics of the Ruperto–Carola–University of Heidelberg, Germany for the degree of Doctor of Natural Sciences presented by Dipl. biol. Anja Betzin born in Kassel, Hessen, Germany Oral examination date: 2 The Laurel Forest An Example for Biodiversity Hotspots threatened by Human Impact and Global Change Referees: Prof. Dr. Marcus A. Koch Prof. Dr. Claudia Erbar 3 Eidesstattliche Erklärung Hiermit erkläre ich, dass ich die vorgelegte Dissertation selbst verfasst und mich dabei keiner anderen als der von mir ausdrücklich bezeichneten Quellen und Hilfen bedient habe. Außerdem erkläre ich hiermit, dass ich an keiner anderen Stelle ein Prüfungsverfahren beantragt bzw. die Dissertation in dieser oder anderer Form bereits anderweitig als Prü- fungsarbeit verwendet oder einer anderen Fakultät als Dissertation vorgelegt habe. Heidelberg, den 23.01.2014 .............................................. Anja Betzin 4 Contents I. Summary 9 1. Abstract 10 2. Zusammenfassung 11 II. Introduction 12 3. Canary Islands and the Laurel Forest 13 4. Aims of this Study 20 5. Model Species: Laurus novocanariensis and Ixanthus viscosus 21 5.1. Laurus ...................................... 21 5.2. Ixanthus ..................................... 23 III. Material and Methods 24 6. Sampling 25 7. Laboratory Procedure 27 7.1. DNA Extraction . 27 7.2. AFLP Procedure . 27 7.3. Scoring . 29 7.4. High Resolution Melting . 30 8. Data Analysis 32 8.1. AFLP and HRM Data Analysis . 32 8.2. Hotspots — Diversity in Geographic Space . 34 8.3. Ecology — Ecological and Bioclimatic Analysis . -
Rangifer Tarandus Platyrhynchus) Michał Hubert We˛Grzyn 1, Paulina Wietrzyk-Pełka 1, Agnieszka Galanty 2, Beata Cykowska-Marzencka 3 & Monica Alterskjær Sundset 4
RESEARCH ARTICLE Incomplete degradation of lichen usnic acid and atranorin in Svalbard reindeer (Rangifer tarandus platyrhynchus) Michał Hubert We˛grzyn 1, Paulina Wietrzyk-Pełka 1, Agnieszka Galanty 2, Beata Cykowska-Marzencka 3 & Monica Alterskjær Sundset 4 1 Prof. Z. Czeppe Department of Polar Research and Documentation, Institute of Botany, Jagiellonian University, Kraków, Poland; 2 Department of Pharmacognosy, Pharmaceutical Faculty, Medical College, Jagiellonian University, Kraków, Poland; 3 Laboratory of Bryology, W. Szafer Institute of Botany, Polish Academy of Sciences, Kraków, Poland; 4 Department of Arctic and Marine Biology, UiT—The Arctic University of Norway, Tromsø, Norway Abstract Keywords Lichen secondary metabolites; ruminant; Previous studies of Eurasian tundra reindeer (Rangifer tarandus tarandus) in faecal samples; Spitsbergen; Arctic Norway indicate that their rumen microbiota play a key role in degrading lichen secondary metabolites. We investigated the presence of usnic acid and atranorin Contact in faecal samples from Svalbard reindeer (R. tarandus platyrhynchus). Samples Michał Hubert We˛grzyn, Prof. were collected in Bolterdalen valley together with vegetation samples from the Z. Czeppe Department of Polar study site. The mesic tundra in this area was dominated by vascular plants (59% Research and Documentation, Institute of vegetation cover). Bryophytes (16%) and lichens (25%) were also present. of Botany, Jagiellonian University, Gronostajowa 3, 30-387 Kraków, Poland. Qualitative and quantitative analyses of usnic acid and atranorin in lichen and E-mail: [email protected] faeces samples were performed using high-performance liquid chromatogra- phy. Contents of atranorin averaged 12.49 ± 0.41 mg g–1 in the thalli of Stereo- Abbreviations caulon alpinum, while the average level of usnic acid was lowest in Cladonia mitis HPLC: high-performance liquid (12.75 ± 2.86 mg g–1) and highest in Flavocetraria cucullata (34.87 ± 0.47 mg g–1). -
Laurisilva of Madeira Portugal
LAURISILVA OF MADEIRA PORTUGAL The Laurisilva of Madeira is the largest surviving relict of a virtually extinct laurel forest type once widespread in Europe. It is still 90% primary forest and is a centre of plant diversity, containing a unique suite of rare and relict plants and animals, especially endemic bryophytes, ferns, vascular plants, animals such as the Madeiran long-toed pigeon and a very rich invertebrate fauna. COUNTRY Portugal NAME Laurisilva of Madeira NATURAL WORLD HERITAGE SITE 1999: Inscribed on the World Heritage List under Natural Criteria ix and x. STATEMENT OF OUTSTANDING UNIVERSAL VALUE The UNESCO World Heritage Committee adopted the following Statement of Outstanding Universal Value at the time of inscription: Brief Synthesis The Laurisilva of Madeira, within the Parque Natural da Madeira (Madeira Natural Park) conserves the largest surviving area of primary laurel forest or "laurisilva", a vegetation type that is now confined to the Azores, Madeira and the Canary Islands. These forests display a wealth of ecological niches, intact ecosystem processes, and play a predominant role in maintaining the hydrological balance on the Island of Madeira. The property has great importance for biodiversity conservation with at least 76 vascular plant species endemic to Madeira occurring in the property, together with a high number of endemic invertebrates and two endemic birds including the emblematic Madeiran Laurel Pigeon. Criterion (ix): The Laurisilva of Madeira is an outstanding relict of a previously widespread laurel forest type, which covered much of Southern Europe 15-40 million years ago. The forest of the property completely covers a series of very steep, V-shaped valleys leading from the plateau and east-west ridge in the centre of the island to the north coast. -
Extended Phylogeny and a Revised Generic Classification of The
The Lichenologist 46(5): 627–656 (2014) 6 British Lichen Society, 2014 doi:10.1017/S002428291400019X Extended phylogeny and a revised generic classification of the Pannariaceae (Peltigerales, Ascomycota) Stefan EKMAN, Mats WEDIN, Louise LINDBLOM and Per M. JØRGENSEN Abstract: We estimated phylogeny in the lichen-forming ascomycete family Pannariaceae. We specif- ically modelled spatial (across-site) heterogeneity in nucleotide frequencies, as models not incorpo- rating this heterogeneity were found to be inadequate for our data. Model adequacy was measured here as the ability of the model to reconstruct nucleotide diversity per site in the original sequence data. A potential non-orthologue in the internal transcribed spacer region (ITS) of Degelia plumbea was observed. We propose a revised generic classification for the Pannariaceae, accepting 30 genera, based on our phylogeny, previously published phylogenies, as well as available morphological and chemical data. Four genera are established as new: Austroparmeliella (for the ‘Parmeliella’ lacerata group), Nebularia (for the ‘Parmeliella’ incrassata group), Nevesia (for ‘Fuscopannaria’ sampaiana), and Pectenia (for the ‘Degelia’ plumbea group). Two genera are reduced to synonymy, Moelleropsis (included in Fuscopannaria) and Santessoniella (non-monophyletic; type included in Psoroma). Lepido- collema, described as monotypic, is expanded to include 23 species, most of which have been treated in the ‘Parmeliella’ mariana group. Homothecium and Leightoniella, previously treated in the Collemataceae, are here referred to the Pannariaceae. We propose 41 new species-level combinations in the newly described and re-circumscribed genera mentioned above, as well as in Leciophysma and Psoroma. Key words: Collemataceae, lichen taxonomy, model adequacy, model selection Accepted for publication 13 March 2014 Introduction which include c. -
Linking Dendrometry and Dendrochronology in the Dominant Azorean Tree Laurus Azorica (Seub.) Franco
Article Linking Dendrometry and Dendrochronology in the Dominant Azorean Tree Laurus azorica (Seub.) Franco Bárbara Matos 1,2, Lurdes Borges Silva 1,2,*, Ricardo Camarinho 1,3, Armindo S. Rodrigues 1,3, Ruben Rego 1,2 , Mariana Câmara 1 and Luís Silva 1,2 1 Faculdade de Ciências e Tecnologia, Universidade dos Açores, Rua Mãe de Deus 13A, 9501–855 Ponta Delgada, Portugal 2 InBIO, Rede de Investigação em Biodiversidade e Biologia Evolutiva, Laboratório Associado, CIBIO-Açores, Universidade dos Açores, Apartado 1422, 9501-801 Ponta Delgada, Portugal 3 IVAR, Institute of Volcanology and Risks Assessment, University of the Azores, 9501-801 Ponta Delgada, Portugal * Correspondence: [email protected]; Tel.: +351-296-650-105 Received: 14 May 2019; Accepted: 21 June 2019; Published: 27 June 2019 Abstract: As in many archipelagos, the Azorean primary forest was largely cleared and replaced by secondary forest and grassland, the Azorean tree Laurus azorica (Seub.) Franco being one of the dominant trees in the remaining natural forests. Dendrochronological and dendrometric studies in the Azores mainly focused on non-indigenous trees, either used for timber (e.g., Cryptomeria japonica D. Don) or considered as invasive (Pittosporum undulatum Vent.). Therefore, this study aims to describe the growth ring anatomy of L. azorica, and to understand the relationship between dendrometric traits (e.g., trunk diameter at breast height; tree height), and the number of growth rings. Growth ring anatomy was accessed by wood anatomical preparation of microcore samples while tree age estimation was based on growth ring counts in wood cores taken at breast height and at base. -
Ecological Data of Isopods (Crustacea: Oniscidea) in Laurel Forests from the Western Canary Islands
VIERAEA Vol. 33 41-50 Santa Cruz de Tenerife, diciembre 2005 ISSN 0210-945X Ecological data of isopods (Crustacea: Oniscidea) in laurel forests from the Western Canary Islands ERIK ARNDT* & DIRK MATTERN** * Anhalt University of Applied Sciences, Department LOEL, Strenzfelder Allee 28, D-06406 Bernburg, Germany. Correspondence address. **Ahornweg 15, D-99867 Gotha, Germany. ARNDT, E. & D. MATTERN (2005). Datos ecológicos de isópodos (Crustacea: Oniscidea) en bosques de laurisilva de las islas canarias occidentales. VIERAEA 33: 41-50. RESUMEN: Se examinó la fauna de isópodos en diferentes bosques de laurisilva de La Gomera, El Hierro y La Palma (Canarias Occidentales), con datos obtenidos de trampas pitfall y muestras de suelo, citándose un total de 11 especies. Las comunidades de especies de bosques de La Gomera y El Hierro por una parte, y las de La Palma por otra, fueron muy diferentes a pesar de la similitud de la estructura forestal, la vegetación arbórea y las condiciones climáticas en las tres islas. La especie nativa Porcellio meridionalis es dominante en La Gomera y El Hierro, y alcanza su mayor abundancia en localidades frescas y húmedas por encima de 1200 m s.n.m. En todas las localidades forestales de La Palma fue siempre dominante Armadillidium vulgare, a menudo acompañada por pequeños Trichoniscidae endogeos. Cinco de las especies mencionadas han sido introducidas en las islas por el hombre en fechas históricas. Esas especies invasoras dominan cuantitativamente en muchos sitios del estudio, con una media en la proporción de especímenes invasivos:nativos de 3,1:1 en trampas pitfall, y de 1,1:1 en muestras de suelo.