Chronic Stress and Intestinal Permeability
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Compression of Large Sets of Sequence Data Reveals Fine Diversification of Functional Profiles in Multigene Families of Proteins
Technical note Compression of Large Sets of Sequence Data Reveals Fine Diversification of Functional Profiles in Multigene Families of Proteins: A Study for Peptidyl-Prolyl cis/trans Isomerases (PPIase) Andrzej Galat Retired from: Service d’Ingénierie Moléculaire des Protéines (SIMOPRO), CEA-Université Paris-Saclay, France; [email protected]; Tel.: +33-0164465072 Received: 21 December 2018; Accepted: 21 January 2019; Published: 11 February 2019 Abstract: In this technical note, we describe analyses of more than 15,000 sequences of FK506- binding proteins (FKBP) and cyclophilins, also known as peptidyl-prolyl cis/trans isomerases (PPIases). We have developed a novel way of displaying relative changes of amino acid (AA)- residues at a given sequence position by using heat-maps. This type of representation allows simultaneous estimation of conservation level in a given sequence position in the entire group of functionally-related paralogues (multigene family of proteins). We have also proposed that at least two FKBPs, namely FKBP36, encoded by the Fkbp6 gene and FKBP51, encoded by the Fkbp5 gene, can form dimers bound via a disulfide bridge in the nucleus. This type of dimer may have some crucial function in the regulation of some nuclear complexes at different stages of the cell cycle. Keywords: FKBP; cyclophilin; PPIase; heat-map; immunophilin 1 Introduction About 30 years ago, an exciting adventure began in finding some correlations between pharmacological activities of macrocyclic hydrophobic drugs, namely the cyclic peptide cyclosporine A (CsA), and two macrolides, namely FK506 and rapamycin, which have profound and clinically useful immunosuppressive effects, especially in organ transplantations and in combating some immune disorders. -
FKBP8 Antibody Cat
FKBP8 Antibody Cat. No.: 62-126 FKBP8 Antibody With HepG2 cell line lysate, the resolved proteins were electrophoretically transferred to PVDF membrane and incubated sequentially with primary antibody FKBP38 (1:1000, 4˚C,overnight ) and horseradish peroxidase–conjugated second antibody. After washing, the bound antibody complex was detected using an ECL chemiluminescence reagentand XAR film (Kodak). Specifications HOST SPECIES: Rabbit SPECIES REACTIVITY: Human HOMOLOGY: Predicted species reactivity based on immunogen sequence: Mouse, Rat This FKBP8 antibody is generated from rabbits immunized with a KLH conjugated IMMUNOGEN: synthetic peptide between 199-226 amino acids from the Central region of human FKBP8. TESTED APPLICATIONS: WB APPLICATIONS: For WB starting dilution is: 1:1000 PREDICTED MOLECULAR 45 kDa WEIGHT: September 28, 2021 1 https://www.prosci-inc.com/fkbp8-antibody-62-126.html Properties This antibody is purified through a protein A column, followed by peptide affinity PURIFICATION: purification. CLONALITY: Polyclonal ISOTYPE: Rabbit Ig CONJUGATE: Unconjugated PHYSICAL STATE: Liquid BUFFER: Supplied in PBS with 0.09% (W/V) sodium azide. CONCENTRATION: batch dependent Store at 4˚C for three months and -20˚C, stable for up to one year. As with all antibodies STORAGE CONDITIONS: care should be taken to avoid repeated freeze thaw cycles. Antibodies should not be exposed to prolonged high temperatures. Additional Info OFFICIAL SYMBOL: FKBP8 Peptidyl-prolyl cis-trans isomerase FKBP8, PPIase FKBP8, 38 kDa FK506-binding protein, ALTERNATE NAMES: 38 kDa FKBP, FKBP-38, hFKBP38, FK506-binding protein 8, FKBP-8, FKBPR38, Rotamase, FKBP8, FKBP38 ACCESSION NO.: Q14318 PROTEIN GI NO.: 193806337 GENE ID: 23770 USER NOTE: Optimal dilutions for each application to be determined by the researcher. -
Naringenin Regulates FKBP4/NR3C1/TMEM173 Signaling Pathway in Autophagy and Proliferation of Breast Cancer and Tumor-Infltrating Dendritic Cell Maturation
Naringenin Regulates FKBP4/NR3C1/TMEM173 Signaling Pathway in Autophagy and Proliferation of Breast Cancer and Tumor-Inltrating Dendritic Cell Maturation Hanchu Xiong ( [email protected] ) Zhejiang Provincial People's Hospital https://orcid.org/0000-0001-6075-6895 Zihan Chen First Hospital of Zhejiang Province: Zhejiang University School of Medicine First Aliated Hospital Baihua Lin Zhejiang Provincial People's Hospital Cong Chen Zhejiang University School of Medicine Sir Run Run Shaw Hospital Zhaoqing Li Zhejiang University School of Medicine Sir Run Run Shaw Hospital Yongshi Jia Zhejiang Provincial People's Hospital Linbo Wang Zhejiang University School of Medicine Sir Run Run Shaw Hospital Jichun Zhou Zhejiang University School of Medicine Sir Run Run Shaw Hospital Research Keywords: FKBP4, TMEM173, Autophagy, Exosome, Dendritic cell, Breast cancer Posted Date: July 7th, 2021 DOI: https://doi.org/10.21203/rs.3.rs-659646/v1 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Page 1/38 Abstract Background TMEM173 is a pattern recognition receptor detecting cytoplasmic nucleic acids and transmits cGAS related signals that activate host innate immune responses. It has also been found to be involved in tumor immunity and tumorigenesis. Methods Bc-GenExMiner, PROMO and STRING database were used for analyzing clinical features and interplays of FKBP4, TMEM173 and NR3C1. Transient transfection, western blotting, quantitative real-time PCR, luciferase reporter assay, immunouorescence and nuclear and cytoplasmic fractionation were used for regulation of FKBP4, TMEM173 and NR3C1. Both knockdown and overexpression of FKBP4, TMEM173 and NR3C1 were used to analyze effects on autophagy and proliferation of breast cancer (BC) cells. -
SI Appendix Table of Contents
SI Appendix Contact-ID, a tool for profiling organelle-membrane contact sites, reveals regulatory proteins of mitochondrial-associated membrane formation Chulhwan Kwak1,2†, Sanghee Shin3,4,†, Jong-Seok Park2,†, Minkyo Jung5, Truong Thi My Nhung6, Myeong-Gyun Kang1,2, Chaiheon Lee2, Tae-Hyuk Kwon2, Sang Ki Park6,*, Ji Young Mun5,*, Jong-Seo Kim3,4,*, and Hyun-Woo Rhee1,4* 1Department of Chemistry, Seoul National University, Seoul, 08826, Korea 2Department of Chemistry, Ulsan National Institute of Science and Technology (UNIST), Ulsan, 44919, Korea 3Center for RNA Research, Institute of Basic Science (IBS), Seoul, 08826, Korea 4School of Biological Sciences, Seoul National University, Seoul, 08826, Korea 5Department of Structure and Function of Neural Network, Korea Brain Research Institute, Daegu, 41062, South Korea 6 Department of Life Sciences, Pohang University of Science and Technology (POSTECH), 37673, Pohang, Republic of Korea. *Corresponding authors: [email protected] (H.-W.R.), [email protected] (J.-S.K.), [email protected] (J. Y. M.), [email protected] (S. K. P.) † These authors equally contributed to this work. Table of Contents Table S1------------------------------------------------------------------------------------------------------------------------------------------------S3 Figure S1-17------------------------------------------------------------------------------------------------------------------------------S4-32 Movie S1-4& dataset S1-5 legends-------------------------------------------------------------------------------------------------------S33 -
ZMYND10 Functions in a Chaperone Relay During Axonemal Dynein
RESEARCH ARTICLE ZMYND10 functions in a chaperone relay during axonemal dynein assembly Girish R Mali1†‡, Patricia L Yeyati1†, Seiya Mizuno2, Daniel O Dodd1, Peter A Tennant1, Margaret A Keighren1, Petra zur Lage3, Amelia Shoemark4, Amaya Garcia-Munoz5, Atsuko Shimada6, Hiroyuki Takeda6, Frank Edlich7,8, Satoru Takahashi2,9, Alex von Kreigsheim5,10, Andrew P Jarman3, Pleasantine Mill1* 1MRC Human Genetics Unit, Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh, United Kingdom; 2Laboratory Animal Resource Centre, University of Tsukuba, Tsukuba, Japan; 3Centre for Discovery Brain Sciences, University of Edinburgh, Edinburgh, United Kingdom; 4Division of Molecular and Clinical Medicine, University of Dundee, Dundee, United Kingdom; 5Systems Biology Ireland, University College Dublin, Dublin, Ireland; 6Department of Biological Sciences, University of Tokyo, Tokyo, Japan; 7Institute for Biochemistry and Molecular Biology, University of Freiburg, Freiburg, Germany; 8BIOSS, Centre for Biological Signaling Studies, University of Freiburg, Freiburg, Germany; 9Department of Anatomy and Embryology, Faculty of Medicine, University of Tsukuba, Tsukuba, Japan; 10Edinburgh Cancer Research UK Centre, Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh, United Kingdom *For correspondence: [email protected] †These authors contributed Abstract Molecular chaperones promote the folding and macromolecular assembly of a diverse equally to this work set of ‘client’ proteins. How ubiquitous chaperone machineries direct their activities towards specific sets of substrates is unclear. Through the use of mouse genetics, imaging and quantitative Present address: ‡MRC Laboratory of Molecular Biology, proteomics we uncover that ZMYND10 is a novel co-chaperone that confers specificity for the Cambridge, United Kingdom FKBP8-HSP90 chaperone complex towards axonemal dynein clients required for cilia motility. -
DNA Methylation of FKBP5 in South African Women: Associations with Obesity and Insulin Resistance Tarryn Willmer1,2* , Julia H
Willmer et al. Clinical Epigenetics (2020) 12:141 https://doi.org/10.1186/s13148-020-00932-3 RESEARCH Open Access DNA methylation of FKBP5 in South African women: associations with obesity and insulin resistance Tarryn Willmer1,2* , Julia H. Goedecke3,4, Stephanie Dias1, Johan Louw1,5 and Carmen Pheiffer1,2 Abstract Background: Disruption of the hypothalamic–pituitary–adrenal (HPA) axis, a neuroendocrine system associated with the stress response, has been hypothesized to contribute to obesity development. This may be mediated through epigenetic modulation of HPA axis-regulatory genes in response to metabolic stressors. The aim of this study was to investigate adipose tissue depot-specific DNA methylation differences in the glucocorticoid receptor (GR) and its co-chaperone, FK506-binding protein 51 kDa (FKBP5), both key modulators of the HPA axis. Methods: Abdominal subcutaneous adipose tissue (ASAT) and gluteal subcutaneous adipose tissue (GSAT) biopsies were obtained from a sample of 27 obese and 27 normal weight urban-dwelling South African women. DNA methylation and gene expression were measured by pyrosequencing and quantitative real-time PCR, respectively. Spearman’s correlation coefficients, orthogonal partial least-squares discriminant analysis and multivariable linear regression were performed to evaluate the associations between DNA methylation, messenger RNA (mRNA) expression and key indices of obesity and metabolic dysfunction. Results: Two CpG dinucleotides within intron 7 of FKBP5 were hypermethylated in both ASAT and GSAT in obese compared to normal weight women, while no differences in GR methylation were observed. Higher percentage methylation of the two FKBP5 CpG sites correlated with adiposity (body mass index and waist circumference), insulin resistance (homeostasis model for insulin resistance, fasting insulin and plasma adipokines) and systemic inflammation (c-reactive protein) in both adipose depots. -
Impact of Fkbp5 × Early Life Adversity × Sex in Humanized Mice on Multidimen- Sional Stress Responses and Circadian Rhythmicity
bioRxiv preprint doi: https://doi.org/10.1101/2021.07.06.450863; this version posted July 8, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. Title Page Title Impact of Fkbp5 × Early Life Adversity × Sex in Humanized Mice on Multidimen- sional Stress Responses and Circadian Rhythmicity Corresponding Author M.Sc. Verena Nold Boehringer Ingelheim Pharma GmbH & Co KG, CNSDR (and Ulm University, Clinical & Biological Psychology) Birkendorferstraße 65 88397 Biberach an der Riß Germany [email protected] https://orcid.org/0000-0003-0302-0966 Phone +49 (7351) 54-187968 Co-Authors Michelle Portenhauser, Boehringer Ingelheim Pharma GmbH & Co KG Dr. Dolores Del Prete, BioMedX Institute, Heidelberg Andrea Blasius, Boehringer Ingelheim Pharma GmbH & Co KG Isabella Harris, University of Manchester, England Dr. Eliza Koros, Boehringer Ingelheim Pharma GmbH & Co KG Dr. Tatiana Peleh, Boehringer Ingelheim Pharma GmbH & Co KG Prof. Dr. Bastian Hengerer, Boehringer Ingelheim Pharma GmbH & Co KG Prof. Dr. Iris-Tatjana Kolassa, Ulm University, Clinical & Biological Psychology Dr. Michal Slezak,Lukasiewicz Research Network - Polish Center for Technology Development Dr. Kelly Ann Allers, Boehringer Ingelheim Pharma GmbH & Co KG Running Title Early Life Adversity × Fkbp5 Polymorphisms Modulate Adult Stress Physiology Keywords Fkbp5, early life adversity, stress resilience, psychiatric disorder, animal model, cir- cadian rhythmicity 1 bioRxiv preprint doi: https://doi.org/10.1101/2021.07.06.450863; this version posted July 8, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. -
Interaction of Polymorphisms in the Fkbp5 Gene & Childhood Adversity on the Cortisol Response to a Psychosocial Stress Task in Adolescents and Young Adults
INTERACTION OF POLYMORPHISMS IN THE FKBP5 GENE & CHILDHOOD ADVERSITY ON THE CORTISOL RESPONSE TO A PSYCHOSOCIAL STRESS TASK IN ADOLESCENTS AND YOUNG ADULTS by Raegan Mazurka A thesis submitted to the Department of Psychology In conformity with the requirements for the degree of Master of Science Queen’s University Kingston, Ontario, Canada (September, 2013) Copyright © Raegan Mazurka, 2013 Abstract Childhood adversity is often associated with devastating physical, cognitive, and psychosocial outcomes, and is a major public health problem in terms of its prevalence and economic cost. Childhood adversity is associated with increased risk for psychopathology, as well as with dysregulation of the neurobiological stress response. An additional factor known to alter neuroendocrine functioning and increase psychopathology risk is polymorphisms within the FKBP5 gene. The goal of the current study was to examine the gene-environment interaction of childhood adversity and variation in the FKBP5 gene on the cortisol response to a psychosocial stress task (i.e., the Trier Social Stress Test). The final sample consisted of 90 depressed and non- depressed adolescents and young adults (11 - 21 years). Childhood adversity was assessed using the Childhood Experience and Abuse Scale (CECA; Bifulco et al., 1994), and was defined as the presence versus absence prior to 18 years of age of severe physical, sexual, or emotional abuse or neglect, witness to domestic discord/violence, or peer-perpetrated bullying. Participants were genotyped at the rs1360780 site of the FKBP5 gene and grouped according to whether they had at least one risk T allele (i.e., TT or TC genotype versus the CC genotype). -
Roadmap for Resilience: the California Surgeon General's
DECEMBER 09, 2020 Roadmap for Resilience The California Surgeon General’s Report on Adverse Childhood Experiences, Toxic Stress, and Health Roadmap for Resilience: The California Surgeon General’s Report on Adverse Childhood Experiences, Toxic Stress, and Health Suggested citation for the report: Bhushan D, Kotz K, McCall J, Wirtz S, Gilgoff R, Dube SR, Powers C, Olson-Morgan J, Galeste M, Patterson K, Harris L, Mills A, Bethell C, Burke Harris N, Office of the California Surgeon General. Roadmap for Resilience: The California Surgeon General’s Report on Adverse Childhood Experiences, Toxic Stress, and Health. Office of the California Surgeon General, 2020. DOI: 10.48019/PEAM8812. OFFICE OF THE GOVERNOR December 2, 2020 In one of my first acts as Governor, I established the role of California Surgeon General. Among all the myriad challenges facing our administration on the first day, addressing persistent challenges to the health and welfare of the people of our state—especially that of the youngest Californians—was an essential priority. We led with the overwhelming scientific consensus that upstream factors, including toxic stress and the social determinants of health, are the root causes of many of the most harmful and persistent health challenges, from heart disease to homelessness. An issue so critical to the health of 40 million Californians deserved nothing less than a world-renowned expert and advocate. Appointed in 2019 to be the first- ever California Surgeon General, Dr. Nadine Burke Harris brought groundbreaking research and expertise in childhood trauma and adversity to the State’s efforts. In this new role, Dr. Burke Harris set three key priorities – early childhood, health equity and Adverse Childhood Experiences (ACEs) and toxic stress – and is working across my administration to give voice to the science and evidence-based practices that are foundational to the success of our work as a state. -
FKBP8 and the Autophagy-Inducing Class-III PI3K Complex Roles of LIR Dependent Interactions
Faculty of Health Science Department of Medical Biology FKBP8 and the autophagy-inducing Class-III PI3K Complex Roles of LIR dependent interactions Zambarlal Bhujabal A dissertation for the degree of Philosophiae Doctor – June 2017 FKBP8 and the autophagy-inducing Class-III PI3K Complex Roles of LIR dependent interactions Zambarlal Baban Bhujabal A dissertation for the degree of Philosophiae Doctor UiT The Artic University of Norway Faculty of Health Science Department of Medical Biology Molecular Cancer Research Group June 2017 Table of Contents Acknowledgement ....................................................................................................................... I Abbreviation ...............................................................................................................................II Summary .................................................................................................................................. IV List of papers ............................................................................................................................. V Introduction ................................................................................................................................ 1 Ubiquitin Proteasome System (UPS) ..................................................................................... 1 Autophagy .............................................................................................................................. 2 Initiation ............................................................................................................................. -
The Impact of the FKBP5 Gene Polymorphisms on the Relationship Between Traumatic Life Events and Psychotic-Like Experiences in Non-Clinical Adults
brain sciences Article The Impact of the FKBP5 Gene Polymorphisms on the Relationship between Traumatic Life Events and Psychotic-Like Experiences in Non-Clinical Adults Filip Stramecki 1 , Dorota Frydecka 1, Łukasz Gaw˛eda 2, Katarzyna Prochwicz 3, Joanna Kłosowska 3 , Jerzy Samochowiec 4 , Krzysztof Szczygieł 4, Edyta Pawlak 5 , Elzbieta˙ Szmida 6 , Paweł Skiba 6, Andrzej Cechnicki 7 and Błazej˙ Misiak 1,* 1 Department of Psychiatry, Wroclaw Medical University, Pasteur Street 10, 50-367 Wroclaw, Poland; [email protected] (F.S.); [email protected] (D.F.) 2 Clinical Neuroscience Lab, Institute of Psychology, Polish Academy of Sciences, Jaracza Street 1, 00-378 Warsaw, Poland; [email protected] 3 Institute of Psychology, Jagiellonian University, Ingardena 6 Street, 30-060 Krakow, Poland; [email protected] (K.P.); [email protected] (J.K.) 4 Department of Psychiatry, Pomeranian Medical University, Broniewskiego 26 Street, 71-457 Szczecin, Poland; [email protected] (J.S.); [email protected] (K.S.) 5 Department of Experimental Therapy, Hirszfeld Institute of Immunology and Experimental Therapy, Polish Academy of Sciences, Weigla Street 12, 53-114 Wroclaw, Poland; [email protected] 6 Citation: Stramecki, F.; Frydecka, D.; Department of Genetics, Wroclaw Medical University, Marcinkowskiego 1 Street, 50-368 Wroclaw, Poland; [email protected] (E.S.); [email protected] (P.S.) Gaw˛eda,Ł.; Prochwicz, K.; 7 Department of Community Psychiatry, Medical College Jagiellonian University, Sikorskiego Place 2, Kłosowska, J.; Samochowiec, J.; 31-115 Krakow, Poland; [email protected] Szczygieł, K.; Pawlak, E.; Szmida, E.; * Correspondence: [email protected] Skiba, P.; et al. -
Altered Metabotropic Glutamate Receptor 5 Markers in PTSD: in Vivo and Postmortem Evidence,” by Sophie E
Correction NEUROSCIENCE Correction for “Altered metabotropic glutamate receptor 5 markers in PTSD: In vivo and postmortem evidence,” by Sophie E. Holmes, Matthew J. Girgenti, Margaret T. Davis, Robert H. Pietrzak, Nicole DellaGioia, Nabeel Nabulsi, David Matuskey, Steven Southwick, Ronald S. Duman, Richard E. Carson, John H. Krystal, Irina Esterlis, and the Traumatic Stress Brain Study Group, which was first pub- lished July 17, 2017; 10.1073/pnas.1701749114 (Proc Natl Acad Sci USA 114:8390–8395). The authors note that the affiliation for c should instead appear as National Center for PTSD, Clinical Neurosciences Division, West Haven, CT 06516. The authors also note that this affiliation should be applied to Steven Southwick, in addition to affiliations a and b. The corrected author and affiliation lines appear below. The online version has been corrected. Sophie E. Holmesa,b, Matthew J. Girgentia,b,c,MargaretT. Davisa,b, Robert H. Pietrzaka,b,c, Nicole DellaGioiaa,b, Nabeel Nabulsia,b, David Matuskeya,b, Steven Southwicka,b,c, Ronald S. Dumana,b,c, Richard E. Carsona,b, John H. Krystala,b,c, Irina Esterlisa,b,c, and the Traumatic Stress Brain Study Group aDepartment of Psychiatry, Yale University School of Medicine, New Haven, CT 06519; bDepartment of Radiology and Biomedical Imaging, Yale University School of Medicine, New Haven, CT 06519; and cNational Center for PTSD, Clinical Neurosciences Division, West Haven, CT 06516 www.pnas.org/cgi/doi/10.1073/pnas.1714425114 E7852 | PNAS | September 12, 2017 | vol. 114 | no. 37 www.pnas.org Downloaded by guest on September 29, 2021 Altered metabotropic glutamate receptor 5 markers in PTSD: In vivo and postmortem evidence Sophie E.