Carboxypeptidase N (Kininase I) (Kdnins/Anaphylatoxins/Kallikrein/Proteases/Carboxypeptidase B) YEHUDA LEVIN*T, RANDAL A
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1 Evidence for Gliadin Antibodies As Causative Agents in Schizophrenia
1 Evidence for gliadin antibodies as causative agents in schizophrenia. C.J.Carter PolygenicPathways, 20 Upper Maze Hill, Saint-Leonard’s on Sea, East Sussex, TN37 0LG [email protected] Tel: 0044 (0)1424 422201 I have no fax Abstract Antibodies to gliadin, a component of gluten, have frequently been reported in schizophrenia patients, and in some cases remission has been noted following the instigation of a gluten free diet. Gliadin is a highly immunogenic protein, and B cell epitopes along its entire immunogenic length are homologous to the products of numerous proteins relevant to schizophrenia (p = 0.012 to 3e-25). These include members of the DISC1 interactome, of glutamate, dopamine and neuregulin signalling networks, and of pathways involved in plasticity, dendritic growth or myelination. Antibodies to gliadin are likely to cross react with these key proteins, as has already been observed with synapsin 1 and calreticulin. Gliadin may thus be a causative agent in schizophrenia, under certain genetic and immunological conditions, producing its effects via antibody mediated knockdown of multiple proteins relevant to the disease process. Because of such homology, an autoimmune response may be sustained by the human antigens that resemble gliadin itself, a scenario supported by many reports of immune activation both in the brain and in lymphocytes in schizophrenia. Gluten free diets and removal of such antibodies may be of therapeutic benefit in certain cases of schizophrenia. 2 Introduction A number of studies from China, Norway, and the USA have reported the presence of gliadin antibodies in schizophrenia 1-5. Gliadin is a component of gluten, intolerance to which is implicated in coeliac disease 6. -
Molecular Markers of Serine Protease Evolution
The EMBO Journal Vol. 20 No. 12 pp. 3036±3045, 2001 Molecular markers of serine protease evolution Maxwell M.Krem and Enrico Di Cera1 ment and specialization of the catalytic architecture should correspond to signi®cant evolutionary transitions in the Department of Biochemistry and Molecular Biophysics, Washington University School of Medicine, Box 8231, St Louis, history of protease clans. Evolutionary markers encoun- MO 63110-1093, USA tered in the sequences contributing to the catalytic apparatus would thus give an account of the history of 1Corresponding author e-mail: [email protected] an enzyme family or clan and provide for comparative analysis with other families and clans. Therefore, the use The evolutionary history of serine proteases can be of sequence markers associated with active site structure accounted for by highly conserved amino acids that generates a model for protease evolution with broad form crucial structural and chemical elements of applicability and potential for extension to other classes of the catalytic apparatus. These residues display non- enzymes. random dichotomies in either amino acid choice or The ®rst report of a sequence marker associated with serine codon usage and serve as discrete markers for active site chemistry was the observation that both AGY tracking changes in the active site environment and and TCN codons were used to encode active site serines in supporting structures. These markers categorize a variety of enzyme families (Brenner, 1988). Since serine proteases of the chymotrypsin-like, subtilisin- AGY®TCN interconversion is an uncommon event, it like and a/b-hydrolase fold clans according to phylo- was reasoned that enzymes within the same family genetic lineages, and indicate the relative ages and utilizing different active site codons belonged to different order of appearance of those lineages. -
High-Resolution Mass Spectrometry-Based Approaches for the Detection and Quantification of Peptidase Activity in Plasma
molecules Article High-Resolution Mass Spectrometry-Based Approaches for the Detection and Quantification of Peptidase Activity in Plasma Elisa Maffioli 1,2 , Zhenze Jiang 3, Simona Nonnis 1,2 , Armando Negri 1,2, Valentina Romeo 1, Christopher B. Lietz 3, Vivian Hook 3,4, Giuseppe Ristagno 5, Giuseppe Baselli 6, Erik B. Kistler 7,8 , Federico Aletti 9, Anthony J. O’Donoghue 3,* and Gabriella Tedeschi 1,2,* 1 Department of Veterinary Medicine, University of Milano, 20133 Milano, Italy; elisa.maffi[email protected] (E.M.); [email protected] (S.N.); [email protected] (A.N.); [email protected] (V.R.) 2 Centre for Nanostructured Materials and Interfaces (CIMAINA), University of Milano, 20133 Milano, Italy 3 Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA 92093, USA; [email protected] (Z.J.); [email protected] (C.B.L.); [email protected] (V.H.) 4 Department of Neurosciences, School of Medicine, University of California San Diego, La Jolla, CA 92093, USA 5 Department of Pathophysiology and Transplantation, University of Milan, 20133 Milan, Italy; [email protected] 6 Dipartimento di Elettronica, Informazione e Bioingegneria, Politecnico di Milano, 20133 Milan, Italy; [email protected] 7 Department of Anesthesiology & Critical Care, University of California San Diego, La Jolla, CA 92093, USA; [email protected] 8 Department of Anesthesiology & Critical Care, VA San Diego HealthCare System, San Diego, CA 92161, USA 9 Department of Bioengineering, University of California San Diego, La Jolla, CA 92093, USA; [email protected] * Correspondence: [email protected] (A.J.O.); [email protected] (G.T.); Tel.: +1-8585345360 (A.J.O.); +39-02-50318127 (G.T.) Academic Editor: Paolo Iadarola Received: 28 July 2020; Accepted: 4 September 2020; Published: 6 September 2020 Abstract: Proteomic technologies have identified 234 peptidases in plasma but little quantitative information about the proteolytic activity has been uncovered. -
Structure and Function of a Serine Carboxypeptidase Adapted for Degradation of the Protein Synthesis Antibiotic Microcin C7
Structure and function of a serine carboxypeptidase adapted for degradation of the protein synthesis antibiotic microcin C7 Vinayak Agarwala,b, Anton Tikhonovc,d, Anastasia Metlitskayac, Konstantin Severinovc,d,e, and Satish K. Naira,b,f,1 aCenter for Biophysics and Computational Biology, bInstitute for Genomic Biology, and fDepartment of Biochemistry, University of Illinois at Urbana-Champaign, 600 South Mathews Avenue, Urbana, IL 61801; cInstitutes of Molecular Genetics and Gene Biology, Russian Academy of Sciences, Moscow 11934, Russia; eDepartment of Molecular Biology and Biochemistry, and dWaksman Institute, Rutgers, State University of New Jersey, Piscataway, NJ 08854 Edited by Perry Allen Frey, University of Wisconsin, Madison, WI, and approved January 20, 2012 (received for review August 30, 2011) Several classes of naturally occurring antimicrobials exert their activity is exerted after intracellular processing. Examples of antibiotic activity by specifically targeting aminoacyl-tRNA synthe- naturally occurring antibiotics that employ this Trojan horse strat- tases, validating these enzymes as drug targets. The aspartyl tRNA egy include the LeuRS inhibitor agrocin 84 (in which the toxic synthetase “Trojan horse” inhibitor microcin C7 (McC7) consists of a group is linked through a phosphoramidate bond to a D-glucofur- nonhydrolyzable aspartyl-adenylate conjugated to a hexapeptide anosyloxyphosphoryl moiety) (5), the SerRS inhibitor albomycin carrier that facilitates active import into bacterial cells through an (a toxic group covalently linked to a hydroxymate siderophore) oligopeptide transport system. Subsequent proteolytic processing (6), and the AspRS inhibitor microcin C7 (Fig. 1A, 1) (McC7; releases the toxic compound inside the cell. Producing strains consisting of a modified aspartyl-adenylate linked to a six-residue of McC7 must protect themselves against autotoxicity that may re- peptide carrier). -
Two Distinct Gene Subfamilies Within the Family of Cysteine Protease Genes (Tetrahymena/Propeptide/Cathepsin) KATHLEEN M
Proc. Natl. Acad. Sci. USA Vol. 90, pp. 3063-3067, April 1993 Biochemistry Two distinct gene subfamilies within the family of cysteine protease genes (tetrahymena/propeptide/cathepsin) KATHLEEN M. KARRER*, STACIA L. PEIFFERt, AND MICHELE E. DITOMAS Department of Biology, Marquette University, Milwaukee, WI 53233 Communicated by David M. Prescott, January 7, 1993 ABSTRACT A cDNA clone for a physiologically regulated (4, 5). The clone was isolated from a cDNA library of RNA Tetrahymena cysteine protease gene was sequenced. The nu- from starved cells cloned into the Pst I site ofpUC9 (4). DNA cleotide sequence predicts that the clone encodes a 336-amino fragments were subcloned into pBluescript for sequencing. acid protein composed of a 19-residue N-terminal signal se- The sequence was scanned for open reading frames by using quence followed by a 107-residue propeptide and a 210-residue the DNA INSPECTOR IIE program (Textco), taking into con- mature protein. Comparison of the deduced amino acid se- sideration that in Tetrahymena, as in several ciliates, TAA quence of the protein with those of other cysteine proteases and TAG code for Gln (6-8). DNA sequences that code for revealed a highly conserved interspersed amino acid motif in homologous proteins were identified through a Pearson and the propeptide region of the protein, the ERFNIN motif. The Lipman (9) search ofthe EMBL/GenBank data base by using motifwas present in all ofthe cysteine proteases in the data base with the exception of the cathepsin B-like proteins, which have the TFASTA program. shorter propeptides. Differences in the propeptides and in conserved amino acids of the mature proteins suggest that the RESULTS ERFNIN proteases and the cathepsin B-like proteases consti- tute two distinct subfamilies within the cysteine proteases. -
Chapter 11 Cysteine Proteases
CHAPTER 11 CYSTEINE PROTEASES ZBIGNIEW GRZONKA, FRANCISZEK KASPRZYKOWSKI AND WIESŁAW WICZK∗ Faculty of Chemistry, University of Gdansk,´ Poland ∗[email protected] 1. INTRODUCTION Cysteine proteases (CPs) are present in all living organisms. More than twenty families of cysteine proteases have been described (Barrett, 1994) many of which (e.g. papain, bromelain, ficain , animal cathepsins) are of industrial impor- tance. Recently, cysteine proteases, in particular lysosomal cathepsins, have attracted the interest of the pharmaceutical industry (Leung-Toung et al., 2002). Cathepsins are promising drug targets for many diseases such as osteoporosis, rheumatoid arthritis, arteriosclerosis, cancer, and inflammatory and autoimmune diseases. Caspases, another group of CPs, are important elements of the apoptotic machinery that regulates programmed cell death (Denault and Salvesen, 2002). Comprehensive information on CPs can be found in many excellent books and reviews (Barrett et al., 1998; Bordusa, 2002; Drauz and Waldmann, 2002; Lecaille et al., 2002; McGrath, 1999; Otto and Schirmeister, 1997). 2. STRUCTURE AND FUNCTION 2.1. Classification and Evolution Cysteine proteases (EC.3.4.22) are proteins of molecular mass about 21-30 kDa. They catalyse the hydrolysis of peptide, amide, ester, thiol ester and thiono ester bonds. The CP family can be subdivided into exopeptidases (e.g. cathepsin X, carboxypeptidase B) and endopeptidases (papain, bromelain, ficain, cathepsins). Exopeptidases cleave the peptide bond proximal to the amino or carboxy termini of the substrate, whereas endopeptidases cleave peptide bonds distant from the N- or C-termini. Cysteine proteases are divided into five clans: CA (papain-like enzymes), 181 J. Polaina and A.P. MacCabe (eds.), Industrial Enzymes, 181–195. -
The Role of Cysteine Cathepsins in Cancer Progression and Drug Resistance
International Journal of Molecular Sciences Review The Role of Cysteine Cathepsins in Cancer Progression and Drug Resistance Magdalena Rudzi ´nska 1, Alessandro Parodi 1, Surinder M. Soond 1, Andrey Z. Vinarov 2, Dmitry O. Korolev 2, Andrey O. Morozov 2, Cenk Daglioglu 3 , Yusuf Tutar 4 and Andrey A. Zamyatnin Jr. 1,5,* 1 Institute of Molecular Medicine, Sechenov First Moscow State Medical University, 119991 Moscow, Russia 2 Institute for Urology and Reproductive Health, Sechenov University, 119992 Moscow, Russia 3 Izmir Institute of Technology, Faculty of Science, Department of Molecular Biology and Genetics, 35430 Urla/Izmir, Turkey 4 Faculty of Pharmacy, University of Health Sciences, 34668 Istanbul, Turkey 5 Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, 119991 Moscow, Russia * Correspondence: [email protected]; Tel.: +7-4956229843 Received: 26 June 2019; Accepted: 19 July 2019; Published: 23 July 2019 Abstract: Cysteine cathepsins are lysosomal enzymes belonging to the papain family. Their expression is misregulated in a wide variety of tumors, and ample data prove their involvement in cancer progression, angiogenesis, metastasis, and in the occurrence of drug resistance. However, while their overexpression is usually associated with highly aggressive tumor phenotypes, their mechanistic role in cancer progression is still to be determined to develop new therapeutic strategies. In this review, we highlight the literature related to the role of the cysteine cathepsins in cancer biology, with particular emphasis on their input into tumor biology. Keywords: cysteine cathepsins; cancer progression; drug resistance 1. Introduction Cathepsins are lysosomal proteases and, according to their active site, they can be classified into cysteine, aspartate, and serine cathepsins [1]. -
Proteolytic Cleavage—Mechanisms, Function
Review Cite This: Chem. Rev. 2018, 118, 1137−1168 pubs.acs.org/CR Proteolytic CleavageMechanisms, Function, and “Omic” Approaches for a Near-Ubiquitous Posttranslational Modification Theo Klein,†,⊥ Ulrich Eckhard,†,§ Antoine Dufour,†,¶ Nestor Solis,† and Christopher M. Overall*,†,‡ † ‡ Life Sciences Institute, Department of Oral Biological and Medical Sciences, and Department of Biochemistry and Molecular Biology, University of British Columbia, Vancouver, British Columbia V6T 1Z4, Canada ABSTRACT: Proteases enzymatically hydrolyze peptide bonds in substrate proteins, resulting in a widespread, irreversible posttranslational modification of the protein’s structure and biological function. Often regarded as a mere degradative mechanism in destruction of proteins or turnover in maintaining physiological homeostasis, recent research in the field of degradomics has led to the recognition of two main yet unexpected concepts. First, that targeted, limited proteolytic cleavage events by a wide repertoire of proteases are pivotal regulators of most, if not all, physiological and pathological processes. Second, an unexpected in vivo abundance of stable cleaved proteins revealed pervasive, functionally relevant protein processing in normal and diseased tissuefrom 40 to 70% of proteins also occur in vivo as distinct stable proteoforms with undocumented N- or C- termini, meaning these proteoforms are stable functional cleavage products, most with unknown functional implications. In this Review, we discuss the structural biology aspects and mechanisms -
Intrinsic Evolutionary Constraints on Protease Structure, Enzyme
Intrinsic evolutionary constraints on protease PNAS PLUS structure, enzyme acylation, and the identity of the catalytic triad Andrew R. Buller and Craig A. Townsend1 Departments of Biophysics and Chemistry, The Johns Hopkins University, Baltimore MD 21218 Edited by David Baker, University of Washington, Seattle, WA, and approved January 11, 2013 (received for review December 6, 2012) The study of proteolysis lies at the heart of our understanding of enzyme evolution remain unanswered. Because evolution oper- biocatalysis, enzyme evolution, and drug development. To un- ates through random forces, rationalizing why a particular out- derstand the degree of natural variation in protease active sites, come occurs is a difficult challenge. For example, the hydroxyl we systematically evaluated simple active site features from all nucleophile of a Ser protease was swapped for the thiol of Cys at serine, cysteine and threonine proteases of independent lineage. least twice in evolutionary history (9). However, there is not This convergent evolutionary analysis revealed several interre- a single example of Thr naturally substituting for Ser in the lated and previously unrecognized relationships. The reactive protease catalytic triad, despite its greater chemical similarity rotamer of the nucleophile determines which neighboring amide (9). Instead, the Thr proteases generate their N-terminal nu- can be used in the local oxyanion hole. Each rotamer–oxyanion cleophile through a posttranslational modification: cis-autopro- hole combination limits the location of the moiety facilitating pro- teolysis (10, 11). These facts constitute clear evidence that there ton transfer and, combined together, fixes the stereochemistry of is a strong selective pressure against Thr in the catalytic triad that catalysis. -
Substrate Specificity and Structural Modeling of Human
International Journal of Molecular Sciences Article Substrate Specificity and Structural Modeling of Human Carboxypeptidase Z: A Unique Protease with a Frizzled-Like Domain Javier Garcia-Pardo 1 , Sebastian Tanco 1,2 , Maria C. Garcia-Guerrero 1, Sayani Dasgupta 3, Francesc Xavier Avilés 1 , Julia Lorenzo 1,* and Lloyd D. Fricker 3,* 1 Institut de Biotecnologia i Biomedicina and Departament de Bioquimica i Biologia Molecular, Universitat Autònoma de Barcelona, 08193 Bellaterra, Barcelona, Spain; [email protected] (J.G.-P.); [email protected] (S.T.); [email protected] (M.C.G.-G.); [email protected] (F.X.A.) 2 BiosenSource BV, B-1800 Vilvoorde, Belgium 3 Department of Molecular Pharmacology, Albert Einstein College of Medicine, Bronx, New York, NY 10461, USA; [email protected] * Correspondence: [email protected] (J.L.); [email protected] (L.D.F.); Tel.: +34-93-5868936 (J.L.); +1-718-430-4225 (L.D.F.) Received: 24 October 2020; Accepted: 14 November 2020; Published: 18 November 2020 Abstract: Metallocarboxypeptidase Z (CPZ) is a secreted enzyme that is distinguished from all other members of the M14 metallocarboxypeptidase family by the presence of an N-terminal cysteine-rich Frizzled-like (Fz) domain that binds Wnt proteins. Here, we present a comprehensive analysis of the enzymatic properties and substrate specificity of human CPZ. To investigate the enzymatic properties, we employed dansylated peptide substrates. For substrate specificity profiling, we generated two different large peptide libraries and employed isotopic labeling and quantitative mass spectrometry to study the substrate preference of this enzyme. Our findings revealed that CPZ has a strict requirement for substrates with C-terminal Arg or Lys at the P10 position. -
Brush Border and Cytosol Peptidase Activities of Human Small Intestine in Normal Subjects and Celiac Patients
Pediatr. Res. 14: 8 12-8 18 ( 1980) brush border membrane digestive peptidase: celiac disease small intestine cytosol membrane Brush Border and Cytosol Peptidase Activities of Human Small Intestine in Normal Subjects and Celiac Patients CiLNtKOSO ANIIKIA. SALVIZ'TOKE <'UC'<'lIIAKA. BIZSILIO DL: VIZIA. (;IOKGIO IIL: KITIS. <;ABRIEL.E MAZZA<'<'A. AN11 SALVATORE 1Z~R1~('1110'~" I)c.prrrrn~enrof Pediclrrrc.~ond Depurrmenr of (;ii.crrt~c~nrerologr,I1 I.irc~ttlt~ij .&ledicrne. L'tt~r.i~rvrtrof Ni~pler.Sc~plt,\. Irull.. und ('on.\r,qlro .Vu:ronule dcdle Rrc.erchr. Pro~rirrn(4- Prevc,ttrrve Medic~itrc(Prt~~cc./ I'ermi~rirl ,Wedrc.itlc~. Rontc. Irul, Summary Studies in animals have demonstrated two major subcellular localization of digestive peptidases in the enterocyte. cytosol. and Peptidase activities have been investigated in the brush border brush border, M~~~ of the hydrolyzing dipep- of human proximal jejunum by using dipeptides and tripeptides [ides tripeprides is localized in ,he cytosol (1, 16, 17. 21, 26. and P-naphthylamides of glycyl-I.-proline and amino acids as sub- 32, 35, 42, 46, 49, 53, 54, 60) few except,ons (25, 26. 42. 46. \trates. I'he activities hydrolyzing glycyl-I.-leucine. I.-phenylalanyl- 49, 60): three soluble enzymes dipeptidase and tripeptidase I.-alaninc, and I.-le~cyl~lycylglycinein the brush horder were found have been and (12, 15, 16, 20, 48. to be only 1.5. 15. and 16% of the total peptidase activities present 5 1. 62). Almost all the hydrolyzing the P- in the intestinal mucosa, but the specific activities for the hydrol- naphthylamides ofamino (6. -
Fibroblasts from the Human Skin Dermo-Hypodermal Junction Are
cells Article Fibroblasts from the Human Skin Dermo-Hypodermal Junction are Distinct from Dermal Papillary and Reticular Fibroblasts and from Mesenchymal Stem Cells and Exhibit a Specific Molecular Profile Related to Extracellular Matrix Organization and Modeling Valérie Haydont 1,*, Véronique Neiveyans 1, Philippe Perez 1, Élodie Busson 2, 2 1, 3,4,5,6, , Jean-Jacques Lataillade , Daniel Asselineau y and Nicolas O. Fortunel y * 1 Advanced Research, L’Oréal Research and Innovation, 93600 Aulnay-sous-Bois, France; [email protected] (V.N.); [email protected] (P.P.); [email protected] (D.A.) 2 Department of Medical and Surgical Assistance to the Armed Forces, French Forces Biomedical Research Institute (IRBA), 91223 CEDEX Brétigny sur Orge, France; [email protected] (É.B.); [email protected] (J.-J.L.) 3 Laboratoire de Génomique et Radiobiologie de la Kératinopoïèse, Institut de Biologie François Jacob, CEA/DRF/IRCM, 91000 Evry, France 4 INSERM U967, 92260 Fontenay-aux-Roses, France 5 Université Paris-Diderot, 75013 Paris 7, France 6 Université Paris-Saclay, 78140 Paris 11, France * Correspondence: [email protected] (V.H.); [email protected] (N.O.F.); Tel.: +33-1-48-68-96-00 (V.H.); +33-1-60-87-34-92 or +33-1-60-87-34-98 (N.O.F.) These authors contributed equally to the work. y Received: 15 December 2019; Accepted: 24 January 2020; Published: 5 February 2020 Abstract: Human skin dermis contains fibroblast subpopulations in which characterization is crucial due to their roles in extracellular matrix (ECM) biology.