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Molecular Phylogenetics and Evolution 121 (2018) 212–223 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev Multilocus phylogeny, divergence times, and a major role for the benthic-to- T pelagic axis in the diversification of grunts (Haemulidae) ⁎ Jose Taveraa,b, , Arturo Acero P.c, Peter C. Wainwrightb a Departamento de Biología, Universidad del Valle, Cali, Colombia b Department of Evolution and Ecology, University of California, Davis, CA 95616, United States c Instituto de Estudios en Ciencias del Mar, CECIMAR, Universidad Nacional de Colombia sede Caribe, El Rodadero, Santa Marta, Colombia ARTICLE INFO ABSTRACT Keywords: We present a phylogenetic analysis with divergence time estimates, and an ecomorphological assessment of the Percomorpharia role of the benthic-to-pelagic axis of diversification in the history of haemulid fishes. Phylogenetic analyses were Fish performed on 97 grunt species based on sequence data collected from seven loci. Divergence time estimation Functional traits indicates that Haemulidae originated during the mid Eocene (54.7–42.3 Ma) but that the major lineages were Morphospace formed during the mid-Oligocene 30–25 Ma. We propose a new classification that reflects the phylogenetic Macroevolution history of grunts. Overall the pattern of morphological and functional diversification in grunts appears to be Zooplanktivore strongly linked with feeding ecology. Feeding traits and the first principal component of body shape strongly separate species that feed in benthic and pelagic habitats. The benthic-to-pelagic axis has been the major axis of ecomorphological diversification in this important group of tropical shoreline fishes, with about 13 transitions between feeding habitats that have had major consequences for head and body morphology. -
Training Manual Series No.15/2018
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by CMFRI Digital Repository DBTR-H D Indian Council of Agricultural Research Ministry of Science and Technology Central Marine Fisheries Research Institute Department of Biotechnology CMFRI Training Manual Series No.15/2018 Training Manual In the frame work of the project: DBT sponsored Three Months National Training in Molecular Biology and Biotechnology for Fisheries Professionals 2015-18 Training Manual In the frame work of the project: DBT sponsored Three Months National Training in Molecular Biology and Biotechnology for Fisheries Professionals 2015-18 Training Manual This is a limited edition of the CMFRI Training Manual provided to participants of the “DBT sponsored Three Months National Training in Molecular Biology and Biotechnology for Fisheries Professionals” organized by the Marine Biotechnology Division of Central Marine Fisheries Research Institute (CMFRI), from 2nd February 2015 - 31st March 2018. Principal Investigator Dr. P. Vijayagopal Compiled & Edited by Dr. P. Vijayagopal Dr. Reynold Peter Assisted by Aditya Prabhakar Swetha Dhamodharan P V ISBN 978-93-82263-24-1 CMFRI Training Manual Series No.15/2018 Published by Dr A Gopalakrishnan Director, Central Marine Fisheries Research Institute (ICAR-CMFRI) Central Marine Fisheries Research Institute PB.No:1603, Ernakulam North P.O, Kochi-682018, India. 2 Foreword Central Marine Fisheries Research Institute (CMFRI), Kochi along with CIFE, Mumbai and CIFA, Bhubaneswar within the Indian Council of Agricultural Research (ICAR) and Department of Biotechnology of Government of India organized a series of training programs entitled “DBT sponsored Three Months National Training in Molecular Biology and Biotechnology for Fisheries Professionals”. -
Perciformes: Haemulidae) Inferred Using Mitochondrial and Nuclear Genes
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/256288239 A molecular phylogeny of the Grunts (Perciformes: Haemulidae) inferred using mitochondrial and nuclear genes Article in Zootaxa · June 2011 DOI: 10.11646/zootaxa.2966.1.4 CITATIONS READS 35 633 3 authors, including: Millicent D Sanciangco Luiz A Rocha Old Dominion University California Academy of Sciences 26 PUBLICATIONS 1,370 CITATIONS 312 PUBLICATIONS 8,691 CITATIONS SEE PROFILE SEE PROFILE Some of the authors of this publication are also working on these related projects: Mesophotic Coral Reefs View project Vitória-Trindade Chain View project All content following this page was uploaded by Luiz A Rocha on 20 May 2014. The user has requested enhancement of the downloaded file. Zootaxa 2966: 37–50 (2011) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2011 · Magnolia Press ISSN 1175-5334 (online edition) A molecular phylogeny of the Grunts (Perciformes: Haemulidae) inferred using mitochondrial and nuclear genes MILLICENT D. SANCIANGCO1, LUIZ A. ROCHA2 & KENT E. CARPENTER1 1Department of Biological Sciences, Old Dominion University, Mills Godwin Building, Norfolk, VA 23529 USA. E-mail: [email protected], [email protected] 2Marine Science Institute, University of Texas at Austin, 750 Channel View Dr., Port Aransas, TX 78373, USA. E-mail: [email protected] Abstract We infer a phylogeny of haemulid genera using mitochondrial COI and Cyt b genes and nuclear RAG1, SH3PX3, and Plagl2 genes from 56 haemulid species representing 18 genera of the expanded haemulids (including the former inermiids) and ten outgroup species. Results from maximum parsimony, maximum likelihood, and Bayesian analyses show strong support for a monophyletic Haemulidae with the inclusion of Emmelichthyops atlanticus. -
2008 Board of Governors Report
American Society of Ichthyologists and Herpetologists Board of Governors Meeting Le Centre Sheraton Montréal Hotel Montréal, Quebec, Canada 23 July 2008 Maureen A. Donnelly Secretary Florida International University Biological Sciences 11200 SW 8th St. - OE 167 Miami, FL 33199 [email protected] 305.348.1235 31 May 2008 The ASIH Board of Governor's is scheduled to meet on Wednesday, 23 July 2008 from 1700- 1900 h in Salon A&B in the Le Centre Sheraton, Montréal Hotel. President Mushinsky plans to move blanket acceptance of all reports included in this book. Items that a governor wishes to discuss will be exempted from the motion for blanket acceptance and will be acted upon individually. We will cover the proposed consititutional changes following discussion of reports. Please remember to bring this booklet with you to the meeting. I will bring a few extra copies to Montreal. Please contact me directly (email is best - [email protected]) with any questions you may have. Please notify me if you will not be able to attend the meeting so I can share your regrets with the Governors. I will leave for Montréal on 20 July 2008 so try to contact me before that date if possible. I will arrive late on the afternoon of 22 July 2008. The Annual Business Meeting will be held on Sunday 27 July 2005 from 1800-2000 h in Salon A&C. Please plan to attend the BOG meeting and Annual Business Meeting. I look forward to seeing you in Montréal. Sincerely, Maureen A. Donnelly ASIH Secretary 1 ASIH BOARD OF GOVERNORS 2008 Past Presidents Executive Elected Officers Committee (not on EXEC) Atz, J.W. -
Using a Collaborative Data Collection Method to Update Life-History Values for Snapper And
bioRxiv preprint doi: https://doi.org/10.1101/655571; this version posted May 30, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 1 Using a collaborative data collection method to update life-history values for snapper and 2 grouper in Indonesia’s deep-slope demersal fishery 3 4 Elle Wibisono1*, Peter Mous2, Austin Humphries1,3 5 1 Department of Fisheries, Animal and Veterinary Sciences, University of Rhode Island, 6 Kingston, Rhode Island, USA 7 2 The Nature Conservancy Indonesia Fisheries Conservation Program, Bali, Indonesia 8 3 Graduate School of Oceanography, University of Rhode Island, Narragansett, Rhode Island, 9 USA 10 11 12 *Corresponding author 13 E-mail: [email protected] (EW) 14 15 1 bioRxiv preprint doi: https://doi.org/10.1101/655571; this version posted May 30, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 16 Abstract 17 The deep-slope demersal fishery that targets snapper and grouper species is an important fishery 18 in Indonesia. Boats operate at depths between 50-500 m using drop lines and bottom long lines. 19 There are few data, however, on the basic characteristics of the fishery which impedes accurate 20 stock assessments and the establishment of harvest control rules. -
Synopsis of the Biology and Ecology of Pomadasys Argenteus
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/281954554 Synopsis of the biology and ecology of Pomadasys argenteus. (Haemulidae) in New Caledonia Article in Cybium: International Journal of Ichthyology · February 2009 CITATIONS READS 7 497 3 authors, including: Michel Kulbicki Laurent Wantiez Institute of Research for Development University of New Caledonia 326 PUBLICATIONS 8,974 CITATIONS 197 PUBLICATIONS 3,179 CITATIONS SEE PROFILE SEE PROFILE Some of the authors of this publication are also working on these related projects: Reef fish biogeography and evolution View project Liteau PAMPA View project All content following this page was uploaded by Laurent Wantiez on 15 February 2017. The user has requested enhancement of the downloaded file. Synopsis of the biology and ecology of Pomadasys argenteus (Haemulidae) in New Caledonia by Michel KULBICKI (1), Eric MORIZE (2) & Laurent WANTIEZ (3) ABSTRACT. - Pomadasys argenteus (Forsskål, 1775) is a major commercial and subsistence species of shore fish in most of its range (East Africa to Fiji) but little information is available on its biology and ecology. The present study investigates the major biological and ecological traits of this species in New Caledonia, on the eastern border of its range. This species was mainly found in mangroves and to a lesser extent on nearby soft bottoms. Most of the fish were found in shallow waters (< 5 m), the deepest record being 28 m. Abundance varied within habitats through the year, with fish becoming more abundant on soft bottoms during the reproductive season, which occurs between July and December. The largest specimen was 42 cm FL and 1150 g. -
California State University, Northridge Vertebrate
CALIFORNIA STATE UNIVERSITY, NORTHRIDGE VERTEBRATE CONSUMPTION AND FEASTING AT LA BLANCA, GUATEMALA A thesis submitted in partial fulfillment of the requirements For the degree of Masters of Arts in Anthropology, Public Archaeology By Meghan Sarah Barge May 2012 The thesis of Meghan Barge is approved: ________________________________________________ ___________ Cathy Lynne Costin, PhD. Date ________________________________________________ ___________ Thomas A. Wake, PhD. Date ________________________________________________ ___________ Michael Wayne Love, PhD., Chair Date California State University, Northridge ii ACKNOWLEDGEMENTS I would like to thank Dr. Michael Love for the opportunity to work on the faunal remains from La Blanca, and for his invaluable assistance in writing this thesis. I would like to thank Dr. Thomas Wake for his support in this thesis and for teaching me how to identify and analyze faunal remains. I would like to thank Dr. Cathy Costin for her support in this thesis and for always pushing me to greater heights. I would also like to thank Marie Huber, Benito Guzman, Benjamin Sassoon, Barry Brillantes, and Amanda Roddy for all of their help in the analysis of the faunal remains. Finally, I would like to thank Igor Livshits and Michael Barge for all of their support throughout the years. iii TABLE OF CONTENTS Signature Page ii Acknowledgements iii List of Tables vi Abstract vii Introduction 1 Feasts 3 Food and Feasts 3 Types of Feasts 4 Functions of Feasting 5 Economic Function 5 Political Function 8 Social Function -
Review Article
NESciences, 2018, 3(3): 333-358 doi: 10.28978/nesciences.468995 - REVIEW ARTICLE - A Checklist of the Non-indigenous Fishes in Turkish Marine Waters Cemal Turan1*, Mevlüt Gürlek1, Nuri Başusta2, Ali Uyan1, Servet A. Doğdu1, Serpil Karan1 1Molecular Ecology and Fisheries Genetics Laboratory, Marine Science Department, Faculty of Marine Science and Technology, Iskenderun Technical University, 31220 Iskenderun, Hatay, Turkey 2Fisheries Faculty, Firat University, 23119 Elazig, Turkey Abstract A checklist of non-indigenous marine fishes including bony, cartilaginous and jawless distributed along the Turkish Marine Waters was for the first time generated in the present study. The number of records of non-indigenous fish species found in Turkish marine waters were 101 of which 89 bony, 11 cartilaginous and 1 jawless. In terms of occurrence of non-indigenous fish species in the surrounding Turkish marine waters, the Mediterranean coast has the highest diversity (92 species), followed by the Aegean Sea (50 species), the Marmara Sea (11 species) and the Black Sea (2 species). The Indo-Pacific origin of the non-indigenous fish species is represented with 73 species while the Atlantic origin of the non-indigenous species is represented with 22 species. Only first occurrence of a species in the Mediterranean, Aegean, Marmara and Black Sea Coasts of Turkey is given with its literature in the list. Keywords: Checklist, non-indigenous fishes, Turkish Marien Waters Article history: Received 14 August 2018, Accepted 08 October 2018, Available online 10 October 2018 Introduction Fishes are the most primitive members of the subphylum Craniata, constituting more than half of the living vertebrate species. There is a relatively rich biota in the Mediterranean Sea although it covers less than 1% of the global ocean surface. -
Analysis of Morphometric and Meristic Characteristics of Pomadasys Stridens (Forsskål, 1775), Family: Haemulidae from the Gulf of Suez, Red Sea, Egypt
Egyptian Journal of Aquatic Biology & Fisheries Zoology Department, Faculty of Science, Ain Shams University, Cairo, Egypt. ISSN 1110 – 6131 Vol. 24(6): 281 – 294 (2020) www.ejabf.journals.ekb.eg Analysis of morphometric and meristic characteristics of Pomadasys stridens (Forsskål, 1775), Family: Haemulidae from the Gulf of Suez, Red Sea, Egypt. Aya A. A. Basuonie1 , Manal M. Sabrah2, Asaar S. H. El-Sherbeny2* and Mohamed S. A. El-Sabbagh3 1. General Authority for Fish Resources Development (GAFRD), Suez. Egypt. 2. National Institute of Oceanography and Fisheries, Fisheries Division, Suez, Egypt. 3. Suez University, Faculty of Fish Resources, Human Development and Economic Dept., Egypt. * Corresponding Author: [email protected] ARTICLE INFO ABSTRACT Article History: Received: Aug. 28, 2020 The morphological diagnosis, morphometric, and meristic Accepted: Sept. 9, 2020 characters for the striped piggy Pomadasys stridens in the Gulf of Suez Online: Sept. 12, 2020 were studied by the examination of 165 specimens collected during the _______________ fishing season 2017/2018. These fishes ranged from 8.2 to 16.3 cm in total length and 7.3 to 57.3 g in weight. Twenty morphometric and eleven Keywords: meristic characters were investigated in detail. The analysis of Haemulidae; Pomadasys stridens; morphometric characters revealed that the morphometric measurements of Suez Gulf; various body parts were dependent on body size and there is a gradual morphology; increase in morphometric measurements with an increase in body length. morphometrics; Regression analyses were performed between the independent variable meristics. “TL” and the dependent variables “FL, SL, HL, HD, , BD, PreDL, DFL, PrePL, PFL, PreVL, VFL, PreAL, AFL, CFL, CFH, CPL, CPD” as well as between the independent variable “HL” and the dependent variables “ED, PreOL”. -
HAEMULIDAE FISHING AREA 51 (W. Indian Ocean) Pomadasys Argenteus
click for previous page HAEM Pomad 9 1983 FAO SPECIES IDENTIFICATION SHEETS FISHING AREA 51 FAMILY: HAEMULIDAE (W. Indian Ocean) Pomadasys argenteus (Forsskål, 1775) OTHER SCIENTIFIC NAMES STILL IN USE: Pomadasys hasta (Bloch, 1790) VERNACULAR NAMES: FAO : En - Silver grunt Fr- Grondeur argenté Sp - Corocoro plateado NATIONAL: juvenile 2 pores DISTINCTIVE CHARACTERS: Body oblong and compressed, its depth contained 2.7 to 2.8 times in standard length. Head blunt, its upper profile convex; mouth small; maxilla reaching to eye; pit teeth in jaws arranged in villiform bands; two pores and a median pit on chin. Dorsal fin with 12 spines and 14 soft rays; anal fin with 3 spines and 7 soft rays. Scales ctenoid (rough to touch); lateral line with 45 scales; 5 scale rows between lateral line and dorsal fin origin. Colour: in juveniles, body pale brownish, lighter below, back with irregular longitudinal streaks on alternate scale rows; dorsal fin with dusky membranes; a dark spot on gill cover. In adults, body silvery, with dark blotches on dorsal fin and numerous scattered dark brown to blackish spots on body. underside of head DISTINGUISHING CHARACTERS OF SIMILAR SPECIES OCCURRING IN THE AREA: Pomadasys kakan; 7 scale rows between lateral line and dorsal fin origin (5 in P. argenteus); dark spots on body arranged in pairs, forming vertical bands in juveniles. P. furcatus and P. stridens: longitudinal stripes on body running parallel. P. auritus: gill cover greatly elongated (extremely rare species}. Other Pomadasys species: 6 or more scale rows between lateral line and dorsal fin origin (5 in S. -
Crucero De Evaluacion De
ASPECTOS ECOLOGICOS Y PESQUEROS DE LA ICTIOFAUNA DEMERSAL ASOCIADA A LA PLATAFORMA CONTINENTAL DEL PACIFICO COLOMBIANO LUIS ALONSO ZAPATA PADILLA UNIVERSIDAD DEL VALLE FACULTAD DE CIENCIAS DEPARTAMENTO DE BIOLOGÍA MAESTRIA EN CIENCIAS - BIOLOGIA SANTIAGO DE CALI 2011 ASPECTOS ECOLOGICOS Y PESQUEROS DE LA ICTIOFAUNA DEMERSAL ASOCIADA A LA PLATAFORMA CONTINENTAL DEL PACIFICO COLOMBIANO LUIS ALONSO ZAPATA PADILLA Tesis presentada como requisito parcial para obtener el título de Maestría en Ciencias - Biología Director EFRAÍN ALFONSO RUBIO RINCÓN Oceanógrafo biólogo Ph D Profesor emérito Universidad del Valle UNIVERSIDAD DEL VALLE FACULTAD DE CIENCIAS DEPARTAMENTO DE BIOLOGÍA MAESTRIA EN CIENCIAS - BIOLOGIA SANTIAGO DE CALI 2011 2 NOTA DE APROBACIÓN El trabajo de grado titulado “Aspectos ecológicos y pesqueros de la ictiofauna demersal asociada a la plataforma continental del Pacífico colombiano”, presentado por el estudiante LUIS ALONSO ZAPATA PADILLA, para optar al título de Biólogo M Sc., fue revisado por el jurado y calificado como: APROBADO Efraín Alfonso Rubio Rincón Director Jurado Jurado 3 DEDICATORIA A Beatriz, Andrea, mis padres, mi hermana, mi familia de sangre y a la familia que me adoptó con el correr de los años, son de una u otra forma el soporte en la alegría y la dificultad e incentivo en este mundo. Mi amor y mi gratitud por siempre. A todos aquellos que sin saberlo se volvieron parte de mi vida, al acompañarme en todos los momentos difíciles de ese “receso” obligado de casi cinco años que tuve que tomar; por algún motivo que el ser humano no puede entender. Mi aprecio infinito. A los que aún creen que es posible tener un mundo mejor y hacen su aporte para ello en su diario vivir y en el lugar que Dios los puso en este mundo. -
Molecular Phylogeny of Grunts (Teleostei, Haemulidae), with An
Tavera et al. BMC Evolutionary Biology 2012, 12:57 http://www.biomedcentral.com/1471-2148/12/57 RESEARCH ARTICLE Open Access Molecular phylogeny of grunts (Teleostei, Haemulidae), with an emphasis on the ecology, evolution, and speciation history of New World species José Julián Tavera1,2*, Arturo Acero P3, Eduardo F Balart1 and Giacomo Bernardi2 Abstract Background: The fish family Haemulidae is divided in two subfamilies, Haemulinae and Plectorhynchinae (sweetlips), including approximately 17 genera and 145 species. The family has a broad geographic distribution that encompasses contrasting ecological habitats resulting in a unique potential for evolutionary hypotheses testing. In the present work we have examined the phylogenetic relationships of the family using selected representatives of additional Percomorpha based on Bayesian and Maximum likelihood methods by means of three mitochondrial genes. We also developed a phylogenetic hypothesis of the New World species based on five molecular markers (three mitochondrial and two nuclear) as a framework to evaluate the evolutionary history, the ecological diversification and speciation patterns of this group. Results: Mitochondrial genes and different reconstruction methods consistently recovered a monophyletic Haemulidae with the Sillaginidae as its sister clade (although with low support values). Previous studies proposed different relationships that were not recovered in this analysis. We also present a robust molecular phylogeny of Haemulinae based on the combined data of two nuclear and three mitochondrial genes. All topologies support the monophyly of both sub-families (Haemulinae, Plectorhinchinae). The genus Pomadasys was shown to be polyphyletic and Haemulon, Anisotremus, and Plectorhinchus were found to be paraphyletic. Four of seven presumed geminate pairs were indeed found to be sister species, however our data did not support a contemporaneous divergence.