Aggression in Closely Related Malawi Cichlids Varies Inversely with Habitat Complexity

Total Page:16

File Type:pdf, Size:1020Kb

Aggression in Closely Related Malawi Cichlids Varies Inversely with Habitat Complexity Environ Biol Fish DOI 10.1007/s10641-011-9838-7 Aggression in closely related Malawi cichlids varies inversely with habitat complexity Patrick D. Danley Received: 23 September 2010 /Accepted: 2 May 2011 # Springer Science+Business Media B.V. 2011 Abstract Within the past 2 million years, the cichlids strongly influenced by habitat type. The aggressive of Lake Malawi have diversified into well over 500 behavior of one sympatric species pair, Maylandia species resulting in one of the worlds largest lacustrine benetos and Maylandia zebra, was observed under fish radiations. As a result, many of the habitats within controlled laboratory conditions. Laboratory results the lake support a high diversity of species. In these support field observations: the bedrock associated highly species rich communities, male cichlids must species performed more aggressive acts and aggressive acquire and defend a territory to successfully reproduce. acts were directed equally at con- and heterospecifics. Within the rock-dwelling cichlids of Lake Malawi The results of this study suggest that habitat complex- (mbuna), this has resulted in the formation of poly- ity plays a larger role in shaping aggressive behavior specific leks on the heterogeneous rocky benthos. than other suggested factors such as competition for Aggression is fairly common in these leks and has been resources. tied not only to individual reproduction but to the larger phenomenon of community assembly and the mainte- Keywords Mbuna . Aggressive behavior . Speciation . nance of biological diversity. In this study, I examined Habitat utilization . Lake Malawi . Metriaclima . the patterns of aggressive acts of four species within the Pseudotropheus mbuna genus Maylandia at two locations in the southern Lake Malawi. The number of aggressive acts Abbreviations of two sympatric species was examined at each Mc-cobble Maylandia callainos location. At each site, one species defends territories Ma-bedrock Maylandia aurora over bedrock and the other over cobble. The number of Mz-cobble Maylandia zebra aggressive acts across the four species was compared. Mb-bedrock Maylandia benetos The influence of habitat type on male aggression was examined and the targets of male aggression were identified to evaluate several hypotheses concerning the evolution of male aggression. The results show that Introduction aggression quantitatively varied among species, was largely directed towards heterospecifics, and was The cichlid fishes of Lake Malawi have undergone an extraordinary radiation since the formation of the lake P. D. Danley (*) 1–2 million years ago (Meyer 1993; Albertson et al. Department of Biology, Baylor University, 1999). Adaptations to the different macrohabitats One Bear Place #97388, Waco, TX 76798, USA (Fryer and Iles 1972) and different diets (Liem e-mail: [email protected] 1991) have played an important role in the early Environ Biol Fish diversification of Lake Malawi cichlid fishes, while aggressive behavior may play in structuring species the evolution of reproductive characters, specifically rich communities (Mikami et al. 2004). To this end, female mate preferences, male color pattern, and male this study examines the aggressive behavior of four reproductive behavior, are thought to have played a closely related species of Lake Malawi’s rock- primary role in the diversification of the most closely dwelling cichlids. Through an analysis of their related extant species (Danley and Kocher 2001). behavior, I address several hypotheses concerning Male aggression is one aspect of cichlid reproductive the evolution of aggressive behavior in the mbuna. behavior that is gaining greater attention. Aggression is These include several competition for resources hypoth- necessary for males to acquire and retain breeding eses (mates, space, food). I find that the most compre- territories (Holzberg 1978). Within the rocky habitats, hensive hypothesis takes into account the complexity of this results in the establishment of year long poly- the habitat in which males establish territories. specific leks. Over and within the heterogeneous rocky benthos, males from as many as 40 species compete with each other to establish a territory from which they Methods may approach and display to passing females. In most species of mbuna, if the male successfully attracts a Lake Malawi mbuna female, she will follow him back to a breeding area typically located in the center of the male’sterritory. Mbuna communities tend to be highly diverse; at this While there appears to be some species specificity to study’s sites, territorial males could potentially interact type of substrate males of different species utilize with at least 10 other mbuna species. In these highly (Danley 2001), the highly heterogeneous environment diverse communities, males must acquire a territory to of the benthos dictates that heterospecific males successfully breed (Holzberg 1978). Within any given utilizing different rock types may occur in close territory, the physical features of the substrate define proximity to one another. This may lead to potentially multiple breeding areas and, generally, the male will high levels of interspecific competition and aggression. choose one such area as the focus of his territory. In While male aggressive behavior may have arisen doing so, the male prevents both con- and hetero- from the need to establish a platform from which males specific males from utilizing many of the remaining, can court and mate, male aggression may serve several unoccupied breeding areas within his territory. The additional functions. Male aggression may be used to necessity of male territory acquisition, the high reduce the number of potential competitors for females diversity of these communities, and the presence of by discouraging the presence of similarly colored males multiple potential breeding sites per territory provide (Seehausen and Schluter 2004). Heavily defended conditions that may generate interspecific aggression. territories develop ‘algal gardens’ which might provide trophic resources for females (Genner et al. 1999) Field analysis thereby increasing the male appeal. Alternatively, male aggression may be a secondary consequence of Study species selection on male vigor (Borgia and Coleman 2000) or may evolve in response to physical complexity of This study focused on the behavioral ecology of two the habitat (Jensen et al. 2005). Physically simple species at each of two separate communities (Fig. 1): habitats provide little cover for breeding and may Thumbi West Island (14° 01’27.58” S34°49’ 25.55” E) expose a breeding pair to higher rates of predation, egg and Mazinzi Reef (14° 7’55.98” S34°56’38.87”E). predation, or disruption from interlopers. Males in such These sites are located in the southwest and southeast habitats may need to increase their aggressive behavior basins of the lake, respectively. Mbuna communities at to successfully secure their breeding territory relative to each location are extremely diverse. Ribbink et al. males breeding over more complex habitat. (1983) identified 43 species of mbuna at Thumbi West Understanding the evolution and diversification of Island and at least 10 mbuna species occur at Mazinzi aggressive behavior of the mbuna will facilitate our Reef (Danley, pers. obs.). At each location, a number of understanding of the creation and maintenance of different habitat types can be identified (fields of biological diversity while informing us of the role that boulders >2 m in diameter, areas of rock-sand interface, Environ Biol Fish Fig. 1 Map of Malawi and inset of study area etc.) Of these habitat types, the study species typically Data analysis occupied habitats dominated by either a bedrock or cobble. Bedrock habitat consisted of flat stretches of Counts of aggressive acts were log10 transformed to continuous bedrock occasionally pocked by dislodged achieve a normal distribution. Bartlett’s and Levene’s strata. Cobble habitat contained areas of rocks 20– Tests were used throughout to confirm normality and 100 cm in size. Bedrock is a relatively simple habitat; it is homoscedacity of the data (data not shown). Non- generally uniform save for the closed ended caves parametric test were used when the data was not created by the dislodged strata. Cobble, in contrast, is normally distributed after transformation. An analysis topographically complex and possesses ample interstitial of variance (ANOVA) was performed to determine if areas beneath and between individual rocks. Behavioral significant differences existed in the number of observations at Thumbi West Island focused on May- aggressive acts performed by each species. A Tukey’s landia callainos (N=20, designated Mc-cobble), which post hoc test was used to identify significant differ- occupy territories over cobble, and Maylandia aurora ences between individual species. Wilcoxon tests were (N=18, Ma-bedrock), which tend to mate in cracks in used to compare the number of aggressive acts directed the bedrock. At Mazinzi Reef, behavioral observations towards conspecifics versus heterospecifics as these focused on one cobble dwelling species, Maylanida data were not normally distributed after transformation. zebra (N=15,Mz-cobble), and one bedrock inhabiting Similarly, Wilcoxon tests were used to compare the species, Maylandia benetos (N=15, Mb-bedrock). At number of aggressive acts directed towards mbuna each location, each focal male defended a territory versus non-mbuna species. An analysis of covariance
Recommended publications
  • §4-71-6.5 LIST of CONDITIONALLY APPROVED ANIMALS November
    §4-71-6.5 LIST OF CONDITIONALLY APPROVED ANIMALS November 28, 2006 SCIENTIFIC NAME COMMON NAME INVERTEBRATES PHYLUM Annelida CLASS Oligochaeta ORDER Plesiopora FAMILY Tubificidae Tubifex (all species in genus) worm, tubifex PHYLUM Arthropoda CLASS Crustacea ORDER Anostraca FAMILY Artemiidae Artemia (all species in genus) shrimp, brine ORDER Cladocera FAMILY Daphnidae Daphnia (all species in genus) flea, water ORDER Decapoda FAMILY Atelecyclidae Erimacrus isenbeckii crab, horsehair FAMILY Cancridae Cancer antennarius crab, California rock Cancer anthonyi crab, yellowstone Cancer borealis crab, Jonah Cancer magister crab, dungeness Cancer productus crab, rock (red) FAMILY Geryonidae Geryon affinis crab, golden FAMILY Lithodidae Paralithodes camtschatica crab, Alaskan king FAMILY Majidae Chionocetes bairdi crab, snow Chionocetes opilio crab, snow 1 CONDITIONAL ANIMAL LIST §4-71-6.5 SCIENTIFIC NAME COMMON NAME Chionocetes tanneri crab, snow FAMILY Nephropidae Homarus (all species in genus) lobster, true FAMILY Palaemonidae Macrobrachium lar shrimp, freshwater Macrobrachium rosenbergi prawn, giant long-legged FAMILY Palinuridae Jasus (all species in genus) crayfish, saltwater; lobster Panulirus argus lobster, Atlantic spiny Panulirus longipes femoristriga crayfish, saltwater Panulirus pencillatus lobster, spiny FAMILY Portunidae Callinectes sapidus crab, blue Scylla serrata crab, Samoan; serrate, swimming FAMILY Raninidae Ranina ranina crab, spanner; red frog, Hawaiian CLASS Insecta ORDER Coleoptera FAMILY Tenebrionidae Tenebrio molitor mealworm,
    [Show full text]
  • Phylogeny of a Rapidly Evolving Clade: the Cichlid Fishes of Lake Malawi
    Proc. Natl. Acad. Sci. USA Vol. 96, pp. 5107–5110, April 1999 Evolution Phylogeny of a rapidly evolving clade: The cichlid fishes of Lake Malawi, East Africa (adaptive radiationysexual selectionyspeciationyamplified fragment length polymorphismylineage sorting) R. C. ALBERTSON,J.A.MARKERT,P.D.DANLEY, AND T. D. KOCHER† Department of Zoology and Program in Genetics, University of New Hampshire, Durham, NH 03824 Communicated by John C. Avise, University of Georgia, Athens, GA, March 12, 1999 (received for review December 17, 1998) ABSTRACT Lake Malawi contains a flock of >500 spe- sponsible for speciation, then we expect that sister taxa will cies of cichlid fish that have evolved from a common ancestor frequently differ in color pattern but not morphology. within the last million years. The rapid diversification of this Most attempts to determine the relationships among cichlid group has been attributed to morphological adaptation and to species have used morphological characters, which may be sexual selection, but the relative timing and importance of prone to convergence (8). Molecular sequences normally these mechanisms is not known. A phylogeny of the group provide the independent estimate of phylogeny needed to infer would help identify the role each mechanism has played in the evolutionary mechanisms. The Lake Malawi cichlids, however, evolution of the flock. Previous attempts to reconstruct the are speciating faster than alleles can become fixed within a relationships among these taxa using molecular methods have species (9, 10). The coalescence of mtDNA haplotypes found been frustrated by the persistence of ancestral polymorphisms within populations predates the origin of many species (11). In within species.
    [Show full text]
  • Visit the Georgia Aquarium! with Mo Devlin
    RedfishOctober, 2012 (Issue #16) Visit the Georgia Aquarium! with Mo Devlin Marine BLOG Tropical Goldsaddle Goatfish Factfile First Time at Sea continues! Massive cichlid special! HP MAX L WxDxH 1/6HP 800-2200L/h 1/6HP 300L 39x32x46cm 1/4HP 1000-3600L/h 1/4HP 450L 38x25x44cm 1/3HP 1200-3600L/h 1/3HP 650L 46x39x52cm 3/5HP 1800-4800L/h 3/5HP 1000L 48x52x52cm Freshwater Betta Coldwater Tropical Marine Aqua One Chillers.indd 1 6/09/12 10:56 AM Redfish contents redfishmagazine.com.au 4 About 5 Off the Shelf Email: [email protected] Web: redfishmagazine.com.au Facebook: facebook.com/redfishmagazine 8 Cichlids Explored Twitter: @redfishmagazine Redfish Publishing. Pty Ltd. 23 In the Fishroom with Mo Devlin PO Box 109 Berowra Heights, NSW, Australia, 2082. 29 Reefkeeping Journal: Part V ACN: 151 463 759 Eye Candy Contents Page Photos courtesy: 38 Goldsaddle Goatfish (Top row. Left to Right) 39 Community listing ‘orange fish’ by Joel Kramer ‘Tomini Tang’ by Nomore3xfive @ flickr ‘Flame Hawkfish’ by Nomore3xfive @ flickr ‘Iguana, Galapagos’ by Kathy (kthypryn @ flickr) ‘Arowana’ by Cod _Gabriel @ flickr (Bottom row. Left to Right) ‘Ray’ by Cod_Gabriel @ flickr ‘mushrooms’ by Nomore3xfive @ flickr ‘Barcelona aquarium’ by Alain Feulvarch ‘starfish’ by Ryan Vaarsi ‘Online033 Aquarium’ by Neil McCrae The Fine Print Redfish Magazine General Advice Warning The advice contained in this publication is general in nature and has been prepared without understanding your personal situ- ation, experience, setup, livestock and/or environmental conditions. This general advice is not a substitute for, or equivalent of, advice from a professional aquarist, aquarium retailer or veterinarian.
    [Show full text]
  • Rare Morph Lake Malawi Mbuna Cichlids Benefit from Reduced Aggression from Con- and Hetero-Specifics
    bioRxiv preprint doi: https://doi.org/10.1101/2021.04.08.439056; this version posted April 9, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. 1 Rare morph Lake Malawi mbuna cichlids benefit from reduced aggression from con- and hetero-specifics 2 Running title: Reduced aggression benefits rare morph mbuna 3 4 Alexandra M. Tyers*, Gavan M. Cooke & George F. Turner 5 School of Biological Sciences, Bangor University, Deniol Road, Bangor. Gwynedd. Wales. UK. LL57 2UW 6 * Current address: Max Planck Institute for Biology of Ageing, Joseph-Stelzmann-Straße 9B, 50931, Köln 7 8 Corresponding author: A.M. Tyers, [email protected] 9 10 Abstract 11 Balancing selection is important for the maintenance of polymorphism as it can prevent either fixation of one 12 morph through directional selection or genetic drift, or speciation by disruptive selection. Polychromatism can 13 be maintained if the fitness of alternative morphs depends on the relative frequency in a population. In 14 aggressive species, negative frequency-dependent antagonism can prevent an increase in the frequency of rare 15 morphs as they would only benefit from increased fitness while they are rare. Heterospecific aggression is 16 common in nature and has the potential to contribute to rare morph advantage. Here we carry out field 17 observations and laboratory aggression experiments with mbuna cichlids from Lake Malawi, to investigate the 18 role of con- and heterospecific aggression in the maintenance of polychromatism and identify benefits to rare 19 mores which are likely to result from reduced aggression.
    [Show full text]
  • Kenyi Cichlid (Maylandia Lombardoi) Ecological Risk Screening Summary
    Kenyi Cichlid (Maylandia lombardoi) Ecological Risk Screening Summary U.S. Fish and Wildlife Service, April 2011 Revised, July 2018 Web Version, 8/3/2018 Photo: Ged~commonswiki. Public domain. Available: https://commons.wikimedia.org/wiki/File:Maylandia_lombardoi.jpg. (July 2018). 1 Native Range and Status in the United States Native Range From Kasembe (2017): “Endemic to Lake Malawi. Occurs at Mbenji Island and Nkhomo reef [Malawi].” From Froese and Pauly (2018): “Africa: Endemic to Mbenji Island, Lake Malawi [Malawi].” 1 Status in the United States This species has not been reported as introduced or established in the United States. This species is in trade in the United States. From Imperial Tropicals (2018): “Kenyi Cichlid (Pseudotropheus lombardoi) […] $ 7.99 […] UNSEXED 1” FISH” Means of Introductions in the United States This species has not been reported as introduced or established in the United States. Remarks There is taxonomic uncertainty concerning Maylandia lombardoi. Because it has recently been grouped in the genera Metriaclima and Pseudotropheus, these names were also used when searching for information in preparation of this assessment. From Kasembe (2017): “This species previously appeared on the IUCN Red List in the genus Maylandia but is now considered valid in the genus Metriaclima (Konings 2016, Stauffer et al. 2016).” From Seriously Fish (2018): “There is ongoing debate as to the true genus of this species, it having been variously grouped in both Maylandia and Metriaclima, as well as the currently valid Pseudotropheus.
    [Show full text]
  • Mix and Match Color Vision: Tuning Spectral Sensitivity by Differential Opsin Gene Expression in Lake Malawi Cichlids
    Current Biology, Vol. 15, 1734–1739, October 11, 2005, ©2005 Elsevier Ltd All rights reserved. DOI 10.1016/j.cub.2005.08.010 Mix and Match Color Vision: Tuning Spectral Sensitivity by Differential Opsin Gene Expression in Lake Malawi Cichlids Juliet W.L. Parry,1 Karen L. Carleton,2 Tyrone Spady,2 shallow water on a clear sandy bottom and in bogs. It Aba Carboo,1 David M. Hunt,1 grazes on algae growing on underwater logs and drift- and James K. Bowmaker1,* wood. Both males and females are blue with white or 1Institute of Ophthalmology yellow tail markings. Melanochromis vermivorus lives in University College London shallow water on a rocky shore, free of sediment. It is London EC1V 9EL omnivorous, feeding on plankton and grazing on rock United Kingdom algae. Breeding males are blue or dark purple with 2 Hubbard Center for Genome Studies black stripes, whereas females are yellow with black Department of Zoology stripes. The third species, Tramitichromis (Lethrinops) University of New Hampshire intermedius, is from the sand-dwelling flock and inhab- Durham, New Hampshire 03824 its sheltered water among weeds. It feeds on insect lar- vae and soft invertebrates extracted from the sedi- ments. Breeding males are silvery with orange and green highlights, whereas females are silver with three Summary large dark spots on their flanks. Cichlid fish of the East African Rift Lakes are re- Cone Classes nowned for their diversity and offer a unique opportu- Each of the three species exhibited rods and primarily nity to study adaptive changes in the visual system only three cone pigments, two longer-wave pigments in in rapidly evolving species flocks [1, 2].
    [Show full text]
  • View/Download
    CICHLIFORMES: Cichlidae (part 5) · 1 The ETYFish Project © Christopher Scharpf and Kenneth J. Lazara COMMENTS: v. 10.0 - 11 May 2021 Order CICHLIFORMES (part 5 of 8) Family CICHLIDAE Cichlids (part 5 of 7) Subfamily Pseudocrenilabrinae African Cichlids (Palaeoplex through Yssichromis) Palaeoplex Schedel, Kupriyanov, Katongo & Schliewen 2020 palaeoplex, a key concept in geoecodynamics representing the total genomic variation of a given species in a given landscape, the analysis of which theoretically allows for the reconstruction of that species’ history; since the distribution of P. palimpsest is tied to an ancient landscape (upper Congo River drainage, Zambia), the name refers to its potential to elucidate the complex landscape evolution of that region via its palaeoplex Palaeoplex palimpsest Schedel, Kupriyanov, Katongo & Schliewen 2020 named for how its palaeoplex (see genus) is like a palimpsest (a parchment manuscript page, common in medieval times that has been overwritten after layers of old handwritten letters had been scraped off, in which the old letters are often still visible), revealing how changes in its landscape and/or ecological conditions affected gene flow and left genetic signatures by overwriting the genome several times, whereas remnants of more ancient genomic signatures still persist in the background; this has led to contrasting hypotheses regarding this cichlid’s phylogenetic position Pallidochromis Turner 1994 pallidus, pale, referring to pale coloration of all specimens observed at the time; chromis, a name
    [Show full text]
  • Patterns and Process During the Diversification of the Cichlid Fishes in Lake Malawi, Africa Michael R
    University of New Hampshire University of New Hampshire Scholars' Repository Doctoral Dissertations Student Scholarship Fall 2006 Patterns and process during the diversification of the cichlid fishes in Lake Malawi, Africa Michael R. Kidd University of New Hampshire, Durham Follow this and additional works at: https://scholars.unh.edu/dissertation Recommended Citation Kidd, Michael R., "Patterns and process during the diversification of the cichlid fishes in Lake Malawi, Africa" (2006). Doctoral Dissertations. 342. https://scholars.unh.edu/dissertation/342 This Dissertation is brought to you for free and open access by the Student Scholarship at University of New Hampshire Scholars' Repository. It has been accepted for inclusion in Doctoral Dissertations by an authorized administrator of University of New Hampshire Scholars' Repository. For more information, please contact [email protected]. PATTERNS AND PROCESS DURING THE DIVERSIFICATION OF THE CICHLID FISHES IN LAKE MALAWI, AFRICA BY MICHAEL R. KIDD BA, Williams College, 1991 DISSERTATION Submitted to the University of New Hampshire In Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy in Zoology September, 2006 Reproduced with permission of the copyright owner. Further reproduction prohibited without permission. UMI Number: 3231355 Copyright 2006 by Kidd, Michael R. All rights reserved. INFORMATION TO USERS The quality of this reproduction is dependent upon the quality of the copy submitted. Broken or indistinct print, colored or poor quality illustrations and photographs, print bleed-through, substandard margins, and improper alignment can adversely affect reproduction. In the unlikely event that the author did not send a complete manuscript and there are missing pages, these will be noted.
    [Show full text]
  • Biodiversity in Sub-Saharan Africa and Its Islands Conservation, Management and Sustainable Use
    Biodiversity in Sub-Saharan Africa and its Islands Conservation, Management and Sustainable Use Occasional Papers of the IUCN Species Survival Commission No. 6 IUCN - The World Conservation Union IUCN Species Survival Commission Role of the SSC The Species Survival Commission (SSC) is IUCN's primary source of the 4. To provide advice, information, and expertise to the Secretariat of the scientific and technical information required for the maintenance of biologi- Convention on International Trade in Endangered Species of Wild Fauna cal diversity through the conservation of endangered and vulnerable species and Flora (CITES) and other international agreements affecting conser- of fauna and flora, whilst recommending and promoting measures for their vation of species or biological diversity. conservation, and for the management of other species of conservation con- cern. Its objective is to mobilize action to prevent the extinction of species, 5. To carry out specific tasks on behalf of the Union, including: sub-species and discrete populations of fauna and flora, thereby not only maintaining biological diversity but improving the status of endangered and • coordination of a programme of activities for the conservation of bio- vulnerable species. logical diversity within the framework of the IUCN Conservation Programme. Objectives of the SSC • promotion of the maintenance of biological diversity by monitoring 1. To participate in the further development, promotion and implementation the status of species and populations of conservation concern. of the World Conservation Strategy; to advise on the development of IUCN's Conservation Programme; to support the implementation of the • development and review of conservation action plans and priorities Programme' and to assist in the development, screening, and monitoring for species and their populations.
    [Show full text]
  • Checklist of the Cichlid Fishes of Lake Malawi (Lake Nyasa)
    Checklist of the Cichlid Fishes of Lake Malawi (Lake Nyasa/Niassa) by M.K. Oliver, Ph.D. ––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––– Checklist of the Cichlid Fishes of Lake Malawi (Lake Nyasa/Niassa) by Michael K. Oliver, Ph.D. Peabody Museum of Natural History, Yale University Updated 24 June 2020 First posted June 1999 The cichlids of Lake Malawi constitute the largest vertebrate species flock and largest lacustrine fish fauna on earth. This list includes all cichlid species, and the few subspecies, that have been formally described and named. Many–several hundred–additional endemic cichlid species are known but still undescribed, and this fact must be considered in assessing the biodiversity of the lake. Recent estimates of the total size of the lake’s cichlid fauna, counting both described and known but undescribed species, range from 700–843 species (Turner et al., 2001; Snoeks, 2001; Konings, 2007) or even 1000 species (Konings 2016). Additional undescribed species are still frequently being discovered, particularly in previously unexplored isolated locations and in deep water. The entire Lake Malawi cichlid metaflock is composed of two, possibly separate, endemic assemblages, the “Hap” group and the Mbuna group. Neither has been convincingly shown to be monophyletic. Membership in one or the other, or nonendemic status, is indicated in the checklist below for each genus, as is the type species of each endemic genus. The classification and synonymies are primarily based on the Catalog of Fishes with a few deviations. All synonymized genera and species should now be listed under their senior synonym. Nearly all species are endemic to L. Malawi, in some cases extending also into the upper Shiré River including Lake Malombe and even into the middle Shiré.
    [Show full text]
  • Man Supplement
    Supplementary Materials for Whole Genome Sequences Of Malawi Cichlids Reveal Multiple Radiations Interconnected By Gene Flow Milan Malinsky, Hannes Svardal, Alexandra M. Tyers, Eric A. Miska, Martin J. Genner, George F. Turner, and Richard Durbin correspondence to: [email protected], [email protected] This PDF file includes: Materials and Methods Supplementary Text Figs. S1 to S32 Tables S1 to S8 Materials and Methods DNA extraction and sequencing: DNA was extracted from fin clips using the PureLink® Genomic DNA extraction kit (Life Technologies). Genomic libraries for paired-end sequencing on the Illumina HiSeq 2000 machine were prepared according to the Illumina TruSeq HT protocol to obtain paired-end reads with mean insert size of 300-500bp. As detailed in Supplementary Table 1, we used either Illumina HiSeq v3 chemistry (generating 100bp paired-end reads) or Illumina HiSeq v4 reagents (125bp paired-end reads). Low coverage (~6x) samples with v4 reagents were multiplexed 12 per lane. High coverage (~15x) v4 samples were multiplexed four per lane. For high coverage (~15x) v3 samples, a multiplexed library with 8 samples was sequenced over three lanes. The nine trio samples were multiplexed across eight lanes using the v3 chemistry, delivering approximately 40x coverage per individual. Raw data have been deposited at the NCBI Sequence Read Archive under BioProject PRJEB1254; sample accessions are listed in Table S4. Alignment: Reads were aligned to the Metriaclima zebra reference assembly version 1.111 (Table S5) using the bwa-mem v.0.7.10 algorithm82 with default options. For the trio parent samples that were used in the main analysis, we aligned data from only three of the eight lanes, aiming to have the same genome coverage for the trios as for the remaining (15x) samples.
    [Show full text]
  • Oca Social Meeting Programs
    Buckeye Bulletin Staff Andrew Schock Editor [email protected] Eric Sorensen Exchange Editor [email protected] The Ohio Cichlid Association’s Buckeye Bulletin is produced On the Cover monthly by the Ohio Cichlid Association. All articles and The subject of this month’s cover photo is the best of show winner photographs contained within this at the 2018 Extravaganza! This image was captured by Mo Devlin. publication are being used with consent of the authors. You can find more Mo’s fantastic photos on his AquaMojo Facebook Page. If you have an article, photograph, or ad to submit for publication, please send it to Do you want your picture on the cover of the [email protected]. When Buckeye Bulletin? Please email photos to submitting articles for publication in this bulletin, please remember to [email protected]. include any photographs or art for the article. The Ohio Cichlid Association is not responsible for In This Issue of the Buckeye Bulletin any fact checking or spelling correction in submitted material. Articles will be edited for space and *STUART GRANT UPDATE FROM AD KONINGS* content. *NORTH ROYALTON FISH CLUB* All information in this bulletin is for the sole use of The Ohio Cichlid *EXTRAVAGANZA SHOW RESULTS* Association and the personal use of its members. Articles, *ONE CYPHOTILAPIA FRONTOSA BY PIERRE BRICHARD* photographs, illustrations, and any other printed material may not be used in any way without the written consent of The Ohio Cichlid • PRESIDENT’S MESSAGE • Association. • CICHLID BAP RESULTS • For membership info please contact Hilary Lacerda: • CATFISH BAP RESULTS • [email protected] or visit the OCA forum.
    [Show full text]