Connective-Tissue Growth Factor Modulates WNT Signalling And
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Neurexin Ilia: Extensive Alternative Splicing Generates Membrane-Bound and Soluble Forms Yuri A
Proc. Natl. Acad. Sci. USA Vol. 90, pp. 6410-6414, July 1993 Biochemistry Neurexin IlIa: Extensive alternative splicing generates membrane-bound and soluble forms YURi A. USHKARYOV AND THOMAS C. SUDHOF* Howard Hughes Medical Institute and Department of Molecular Genetics, University of Texas Southwestern Medical School, Dallas, TX 75235 Communicated by Michael S. Brown, March 26, 1993 ABSTRACT The structure ofneurexin lIa was elucidated and 13-neurexins have identical C termini including the from overlapping cDNA clones. Neurexin lIa is highly ho- 0-linked sugar region, transmembrane region, and cytoplas- mologous to neurexins la and Ha and shares with them a mic domain (2). distinctive domain structure that resembles a cell surface Structures of the neurexins are suggestive of cell surface receptor. cDNA cloning and PCR experiments revealed alter- receptors. Indeed, the neurexins were originally found be- native splicing at four positions in the mRNA for neurexin HIa. cause of the identity of the sequence of neurexin Ia and Alternative splicing was previously observed at the same po- sequences from the high molecular weight subunit of the sitions in either neurexin Ia or neurexin Ila or both, suggesting receptor for a presynaptic neurotoxin, a-latrotoxin (7). Im- that the three neurexins are subject to extensive alternative munocytochemistry ofrat brain frozen sections revealed that splicing. This results in hundreds of different neurexins with neurexin I is highly enriched in synapses in agreement with variations in small sequences at similar positions in the pro- the localization of a-latrotoxin (2). These findings suggest teins. The most extensive alternative splicing of neurexin Ma that at least neurexins Ia and I13 are synaptic proteins that, was detected at its C-terminal site, which exhibits a minimum based on their structure and homologies, may represent a of 12 variants. -
A Computational Approach for Defining a Signature of Β-Cell Golgi Stress in Diabetes Mellitus
Page 1 of 781 Diabetes A Computational Approach for Defining a Signature of β-Cell Golgi Stress in Diabetes Mellitus Robert N. Bone1,6,7, Olufunmilola Oyebamiji2, Sayali Talware2, Sharmila Selvaraj2, Preethi Krishnan3,6, Farooq Syed1,6,7, Huanmei Wu2, Carmella Evans-Molina 1,3,4,5,6,7,8* Departments of 1Pediatrics, 3Medicine, 4Anatomy, Cell Biology & Physiology, 5Biochemistry & Molecular Biology, the 6Center for Diabetes & Metabolic Diseases, and the 7Herman B. Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202; 2Department of BioHealth Informatics, Indiana University-Purdue University Indianapolis, Indianapolis, IN, 46202; 8Roudebush VA Medical Center, Indianapolis, IN 46202. *Corresponding Author(s): Carmella Evans-Molina, MD, PhD ([email protected]) Indiana University School of Medicine, 635 Barnhill Drive, MS 2031A, Indianapolis, IN 46202, Telephone: (317) 274-4145, Fax (317) 274-4107 Running Title: Golgi Stress Response in Diabetes Word Count: 4358 Number of Figures: 6 Keywords: Golgi apparatus stress, Islets, β cell, Type 1 diabetes, Type 2 diabetes 1 Diabetes Publish Ahead of Print, published online August 20, 2020 Diabetes Page 2 of 781 ABSTRACT The Golgi apparatus (GA) is an important site of insulin processing and granule maturation, but whether GA organelle dysfunction and GA stress are present in the diabetic β-cell has not been tested. We utilized an informatics-based approach to develop a transcriptional signature of β-cell GA stress using existing RNA sequencing and microarray datasets generated using human islets from donors with diabetes and islets where type 1(T1D) and type 2 diabetes (T2D) had been modeled ex vivo. To narrow our results to GA-specific genes, we applied a filter set of 1,030 genes accepted as GA associated. -
Do Humans Possess the Capability to Regenerate?
The Science Journal of the Lander College of Arts and Sciences Volume 12 Number 2 Spring 2019 - 2019 Do Humans Possess the Capability to Regenerate? Chasha Wuensch Touro College Follow this and additional works at: https://touroscholar.touro.edu/sjlcas Part of the Biology Commons, and the Pharmacology, Toxicology and Environmental Health Commons Recommended Citation Wuensch, C. (2019). Do Humans Possess the Capability to Regenerate?. The Science Journal of the Lander College of Arts and Sciences, 12(2). Retrieved from https://touroscholar.touro.edu/sjlcas/vol12/ iss2/2 This Article is brought to you for free and open access by the Lander College of Arts and Sciences at Touro Scholar. It has been accepted for inclusion in The Science Journal of the Lander College of Arts and Sciences by an authorized editor of Touro Scholar. For more information, please contact [email protected]. Do Humans Possess the Capability to Regenerate? Chasha Wuensch A Chasha Wuensch graduated in May 2018 with a Bachelor of Science degree in Biology and will be attending pharmacy school. Abstract Urodele amphibians, including newts and salamanders, are amongst the most commonly studied research models for regenera- tion .The ability to regenerate, however, is not limited to amphibians, and the regenerative process has been observed in mammals as well .This paper discusses methods by which amphibians and mammals regenerate to lend insights into human regenerative mechanisms and regenerative potential .A focus is placed on the urodele and murine digit tip models, -
Repair, Regeneration, and Fibrosis Gregory C
91731_ch03 12/8/06 7:33 PM Page 71 3 Repair, Regeneration, and Fibrosis Gregory C. Sephel Stephen C. Woodward The Basic Processes of Healing Regeneration Migration of Cells Stem cells Extracellular Matrix Cell Proliferation Remodeling Conditions That Modify Repair Cell Proliferation Local Factors Repair Repair Patterns Repair and Regeneration Suboptimal Wound Repair Wound Healing bservations regarding the repair of wounds (i.e., wound architecture are unaltered. Thus, wounds that do not heal may re- healing) date to physicians in ancient Egypt and battle flect excess proteinase activity, decreased matrix accumulation, Osurgeons in classic Greece. The liver’s ability to regenerate or altered matrix assembly. Conversely, fibrosis and scarring forms the basis of the Greek myth involving Prometheus. The may result from reduced proteinase activity or increased matrix clotting of blood to prevent exsanguination was recognized as accumulation. Whereas the formation of new collagen during the first necessary event in wound healing. At the time of the repair is required for increased strength of the healing site, American Civil War, the development of “laudable pus” in chronic fibrosis is a major component of diseases that involve wounds was thought to be necessary, and its emergence was not chronic injury. appreciated as a symptom of infection but considered a positive sign in the healing process. Later studies of wound infection led The Basic Processes of Healing to the discovery that inflammatory cells are primary actors in the repair process. Although scurvy (see Chapter 8) was described in Many of the basic cellular and molecular mechanisms necessary the 16th century by the British navy, it was not until the 20th for wound healing are found in other processes involving dynamic century that vitamin C (ascorbic acid) was found to be necessary tissue changes, such as development and tumor growth. -
Wound Healing: a Paradigm for Regeneration
SYMPOSIUM ON REGENERATIVE MEDICINE Wound Healing: A Paradigm for Regeneration Victor W. Wong, MD; Geoffrey C. Gurtner, MD; and Michael T. Longaker, MD, MBA From the Hagey Laboratory for Pediatric Regenerative Medi- CME Activity cine, Department of Surgery, Stanford University, Stanford, Target Audience: The target audience for Mayo Clinic Proceedings is primar- relationships with any commercial interest related to the subject matter ily internal medicine physicians and other clinicians who wish to advance of the educational activity. Safeguards against commercial bias have been CA. their current knowledge of clinical medicine and who wish to stay abreast put in place. Faculty also will disclose any off-label and/or investigational of advances in medical research. use of pharmaceuticals or instruments discussed in their presentation. Statement of Need: General internists and primary care physicians must Disclosure of this information will be published in course materials so maintain an extensive knowledge base on a wide variety of topics covering that those participants in the activity may formulate their own judgments all body systems as well as common and uncommon disorders. Mayo Clinic regarding the presentation. Proceedings aims to leverage the expertise of its authors to help physicians In their editorial and administrative roles, William L. Lanier, Jr, MD, Terry L. understand best practices in diagnosis and management of conditions Jopke, Kimberly D. Sankey, and Nicki M. Smith, MPA, have control of the encountered in the clinical setting. content of this program but have no relevant financial relationship(s) with Accreditation: College of Medicine, Mayo Clinic is accredited by the Accred- industry. itation Council for Continuing Medical Education to provide continuing med- The authors report no competing interests. -
Role of the Wnt/ B-Catenin Pathway in Liver Development and Zonation
University of Bath PHD Role of the Wnt/ -catenin Pathway in Liver Development and Zonation Shen Wen, Yeh Award date: 2012 Awarding institution: University of Bath Link to publication Alternative formats If you require this document in an alternative format, please contact: [email protected] General rights Copyright and moral rights for the publications made accessible in the public portal are retained by the authors and/or other copyright owners and it is a condition of accessing publications that users recognise and abide by the legal requirements associated with these rights. • Users may download and print one copy of any publication from the public portal for the purpose of private study or research. • You may not further distribute the material or use it for any profit-making activity or commercial gain • You may freely distribute the URL identifying the publication in the public portal ? Take down policy If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. Download date: 10. Oct. 2021 Role of the Wnt/ -catenin Pathway in Liver Development and Zonation YEH, SHENG-WEN A thesis submitted for the degree of Doctor of Philosophy University of Bath Department of Biology and Biochemistry September, 2012 COPYRIGHT Attention is drawn to the fact that copyright of this thesis rests with the author. A copy of this thesis has been supplied on condition that anyone who consults it is understood to recognise that its copyright rests with the author and that they must not copy it or use material from it except as permitted by law or with the consent of the author. -
Live Imaging and Computational Modelling of Tissue Growth and Tissue Regeneration in Drosophila
Live Imaging and Computational Modelling of Tissue Growth and Tissue Regeneration in Drosophila Jamie Rickman 19th January 2015 Abstract Wound healing in the epithelium of the Drosophila wing imaginal disc is a regenerative process which is known to proceed via the assembly of a contractile actin cable that circumscribes the wound drawing the leading edge cells together in a characterstic rosette formation. Here we computation- ally explore various other biological and mechanical processes that are involved in tissue repair in Drosophila; the formation of dynamic actin protrusions that pull each other forward to close the wound; the active extrusion of dead cells from the wound site; and the effect of a global tension force operating on the tissue. In silico simulation results, using the vertex model of epithelial tissue, and in vivo data are compared. It is found that patterning of line tensions in wounded cells and cells neighbouring the wound can drive rosette formation and wound closure. Results from simulating a global tension force indicate this could recapitulate the initial expansion phase of wound healing seen in experiment. Contents 1 Introduction 2 1.1 Tissue regeneration . 2 1.2 Regenerative healing in Drosophila wing imaginal discs . 2 1.3 The mechanical drivers of epithelial wound healing in Drosophila . 3 2 The Vertex Model 4 3 Current work and results 5 3.1 Wound closure in vivo ...................................... 5 3.1.1 Wound closure rate . 5 3.1.2 Rosette formation . 5 3.1.3 Inital expansion of wound following ablation . 6 3.2 Wound Closure in silico ..................................... 7 3.2.1 Implementation of the vertex model . -
Serotonin Signaling Regulates Insulin-Like Peptides for Growth, Reproduction, and Metabolism in the Disease Vector Aedes Aegypti
Serotonin signaling regulates insulin-like peptides for growth, reproduction, and metabolism in the disease vector Aedes aegypti Lin Linga,b and Alexander S. Raikhela,b,1 aDepartment of Entomology, University of California, Riverside, CA 92521; and bInstitute for Integrative Genome Biology, University of California, Riverside, CA 92521 Contributed by Alexander S. Raikhel, September 6, 2018 (sent for review May 15, 2018; reviewed by Christen Mirth, Michael R. Strand, and Marc Tatar) Disease-transmitting female mosquitoes require a vertebrate individuals have completed adequate growth to enter the next de- blood meal to produce their eggs. An obligatory hematophagous velopmental stage (5, 6). Although other DILPs promote growth, lifestyle, rapid reproduction, and existence of a large number of their specific expression patterns suggest that they might carry out transmittable diseases make mosquitoes the world’s deadliest an- distinct physiological functions (2). In Drosophila larvae, dilps1,-2, imals. Attaining optimal body size and nutritional status is critical -3,and-5 are expressed predominantly in neurosecretory cells for mosquitoes to become reproductively competent and effective (IPCs, insulin producing cells) of the brain; ablation of larval IPCs disease vectors. We report that blood feeding boosts serotonin reduces body size with delayed metamorphosis (7). These DILPs concentration and elevates the serotonin receptor Aa5HT2B regulate growth by means of the canonical insulin/insulin-like (Aedes aegypti 5-hydroxytryptamine receptor, type 2B) transcript growth factor (IGF) pathway. Single gene mutations in insulin/ level in the fat-body, an insect analog of the vertebrate liver and IGF components have been shown to cause a reduction in growth adipose tissue. -
Table SI. Characteristics of 9 Patients Chosen from 60 Patients with Hepatocellular Carcinoma
Table SI. Characteristics of 9 patients chosen from 60 patients with hepatocellular carcinoma. Characteristic No. of patients (%) Age, years <50 3 (33.3) ≥50 6 (66.7) Sex Female 4 (44.4) Male 5 (55.6) Albumin, g/l ≥35 8 (88.9) <35 1 (11.1) AFP, ng/ml ≤20 2 (22.2) >20 7 (77.8) Tumor diameter, cm ≤5 3 (33.3) >5 6 (66.7) Portal vein invasion Without 3 (33.3) With 6 (66.7) BCLC stage A 2 (22.2) B/C 7 (77.8) AFP, α-fetoprotein; BCLC, Barcelona Clinic Liver Cancer. Table SII. List of the gene symbol and relative expression of six significant clusters. Gene symbol SPOT Profile Day 0 Day 3 Day 7 Day 14 Day 21 ALCAM ID_10 16 0 -356.5 378.5 0.1 307.8 ANGPT2 ID_13 16 0 -45.7 197.2 96 60.2 CD80 ID_24 16 0 -177 362 -29 187 CTNNB1 ID_29 16 0 -58 294 83 49 BMP4 ID_37 16 0 -107 189 0 53 CCL28 ID_49 16 0 -307 856 491 347 CCR1 ID_50 16 0 -189 391 236 112 CCR4 ID_53 16 0 -101 361 89 240 CCR7 ID_56 16 0 -98 361 103 66 CLC ID_70 16 0 -147 274 0 188 CRIM1 ID_74 16 0 -642 229 -48 -112 CXCL14 ID_83 16 0 -434 1,154.00 778 376 CXCL16 ID_84 16 0 -128 800 477 180 DKK3 ID_97 16 0 -199 610 107 3 FGFBP1 ID_129 16 0 -224 484 -155 37 FGF20 ID_147 16 0 -113 264 -32 -4 WFIKKN1 ID_163 16 0 -195 544 262 41 GFRA1 ID_175 16 0 -536 443 29 280 GFRA4 ID_178 16 0 -211 208 -47 116 TNFSF18 ID_180 16 0 -14 246 89 68 GPC5 ID_187 16 0 -180 1,345.00 298 509 GH1 ID_194 16 0 -596 206 10 -9 CCHCR1 ID_198 16 0 -108 322 50 238 NRG1 ID_200 16 0 -81 378.5 170.5 187 ICAM1 ID_207 16 0 -136 98 -17 63 IFNB1 ID_213 16 0 -87 233 143 29 IGFBP3 ID_218 16 0 -1,311.00 609 -368 -178 IGFBP4 ID_219 16 0 -
Slit Proteins: Molecular Guidance Cues for Cells Ranging from Neurons to Leukocytes Kit Wong, Hwan Tae Park*, Jane Y Wu* and Yi Rao†
583 Slit proteins: molecular guidance cues for cells ranging from neurons to leukocytes Kit Wong, Hwan Tae Park*, Jane Y Wu* and Yi Rao† Recent studies of molecular guidance cues including the Slit midline glial cells was thought to be abnormal [2,3]. family of secreted proteins have provided new insights into the Projection of the commissural axons was also abnormal: mechanisms of cell migration. Initially discovered in the nervous instead of crossing the midline once before projecting system, Slit functions through its receptor, Roundabout, and an longitudinally, the commissural axons from two sides of the intracellular signal transduction pathway that includes the nerve cord are fused at the midline in slit mutants [2,3]. Abelson kinase, the Enabled protein, GTPase activating proteins Because the midline glial cells are known to be important and the Rho family of small GTPases. Interestingly, Slit also in axon guidance, the commissural axon phenotype in slit appears to use Roundabout to control leukocyte chemotaxis, mutants was initially thought to be secondary to the cell- which occurs in contexts different from neuronal migration, differentiation phenotype [3]. suggesting a fundamental conservation of mechanisms guiding the migration of distinct types of somatic cells. In early 1999, results from three groups demonstrated independently that Slit functioned as an extracellular cue Addresses to guide axon pathfinding [4–6], to promote axon branching Department of Anatomy and Neurobiology, and *Departments of [7], and to control neuronal migration [8]. The functional Pediatrics and Molecular Biology and Pharmacology, Box 8108, roles of Slit in axon guidance and neuronal migration were Washington University School of Medicine, 660 S Euclid Avenue St Louis, soon supported by other studies in Drosophila [9] and in Missouri 63110, USA *e-mail: [email protected] vertebrates [10–14]. -
Novel Roles for Slits and Netrins: Axon Guidance Cues As Anticancer Targets?
Nature Reviews Cancer | AOP, published online 17 February 2011; doi:10.1038/nrc3005 REVIEWS Novel roles for Slits and netrins: axon guidance cues as anticancer targets? Patrick Mehlen*, Céline Delloye-Bourgeois* and Alain Chédotal‡§|| Abstract | Over the past few years, several genes, proteins and signalling pathways that are required for embryogenesis have been shown to regulate tumour development and progression by playing a major part in overriding antitumour safeguard mechanisms. These include axon guidance cues, such as Netrins and Slits. Netrin 1 and members of the Slit family are secreted extracellular matrix proteins that bind to deleted in colorectal cancer (DCC) and UNC5 receptors, and roundabout receptors (Robos), respectively. Their expression is deregulated in a large proportion of human cancers, suggesting that they could be tumour suppressor genes or oncogenes. Moreover, recent data suggest that these ligand–receptor pairs could be promising targets for personalized anticancer therapies. Floor plate Netrin 1 — named from the sanscrit netr, ‘the one who roles of netrin 1 and its receptors have been extensively A group of cells that occupy guides’ — was purified by Tessier-Lavigne and col- described, but little is known about the function of these the ventral midline of the leagues as a soluble factor secreted by floor plate cells able other netrins. Netrin 4, which shares little homology developing vertebrate nervous to elicit the growth of commissural axons1,2. This discovery with netrin 1 (netrin 4, unlike other netrins, which dis- system, extending from the spinal cord to the launched a scientific race to identify novel secreted or play homology to the short arm of laminin-γ chains, is diencephalon. -
DIPPER, a Spatiotemporal Proteomics Atlas of Human Intervertebral Discs
TOOLS AND RESOURCES DIPPER, a spatiotemporal proteomics atlas of human intervertebral discs for exploring ageing and degeneration dynamics Vivian Tam1,2†, Peikai Chen1†‡, Anita Yee1, Nestor Solis3, Theo Klein3§, Mateusz Kudelko1, Rakesh Sharma4, Wilson CW Chan1,2,5, Christopher M Overall3, Lisbet Haglund6, Pak C Sham7, Kathryn Song Eng Cheah1, Danny Chan1,2* 1School of Biomedical Sciences, , The University of Hong Kong, Hong Kong; 2The University of Hong Kong Shenzhen of Research Institute and Innovation (HKU-SIRI), Shenzhen, China; 3Centre for Blood Research, Faculty of Dentistry, University of British Columbia, Vancouver, Canada; 4Proteomics and Metabolomics Core Facility, The University of Hong Kong, Hong Kong; 5Department of Orthopaedics Surgery and Traumatology, HKU-Shenzhen Hospital, Shenzhen, China; 6Department of Surgery, McGill University, Montreal, Canada; 7Centre for PanorOmic Sciences (CPOS), The University of Hong Kong, Hong Kong Abstract The spatiotemporal proteome of the intervertebral disc (IVD) underpins its integrity *For correspondence: and function. We present DIPPER, a deep and comprehensive IVD proteomic resource comprising [email protected] 94 genome-wide profiles from 17 individuals. To begin with, protein modules defining key †These authors contributed directional trends spanning the lateral and anteroposterior axes were derived from high-resolution equally to this work spatial proteomes of intact young cadaveric lumbar IVDs. They revealed novel region-specific Present address: ‡Department profiles of regulatory activities