Studies on Lophiostomataceous Fungi from Xinjiang, China1
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Development and Evaluation of Rrna Targeted in Situ Probes and Phylogenetic Relationships of Freshwater Fungi
Development and evaluation of rRNA targeted in situ probes and phylogenetic relationships of freshwater fungi vorgelegt von Diplom-Biologin Christiane Baschien aus Berlin Von der Fakultät III - Prozesswissenschaften der Technischen Universität Berlin zur Erlangung des akademischen Grades Doktorin der Naturwissenschaften - Dr. rer. nat. - genehmigte Dissertation Promotionsausschuss: Vorsitzender: Prof. Dr. sc. techn. Lutz-Günter Fleischer Berichter: Prof. Dr. rer. nat. Ulrich Szewzyk Berichter: Prof. Dr. rer. nat. Felix Bärlocher Berichter: Dr. habil. Werner Manz Tag der wissenschaftlichen Aussprache: 19.05.2003 Berlin 2003 D83 Table of contents INTRODUCTION ..................................................................................................................................... 1 MATERIAL AND METHODS .................................................................................................................. 8 1. Used organisms ............................................................................................................................. 8 2. Media, culture conditions, maintenance of cultures and harvest procedure.................................. 9 2.1. Culture media........................................................................................................................... 9 2.2. Culture conditions .................................................................................................................. 10 2.3. Maintenance of cultures.........................................................................................................10 -
Molecular Systematics of the Marine Dothideomycetes
available online at www.studiesinmycology.org StudieS in Mycology 64: 155–173. 2009. doi:10.3114/sim.2009.64.09 Molecular systematics of the marine Dothideomycetes S. Suetrong1, 2, C.L. Schoch3, J.W. Spatafora4, J. Kohlmeyer5, B. Volkmann-Kohlmeyer5, J. Sakayaroj2, S. Phongpaichit1, K. Tanaka6, K. Hirayama6 and E.B.G. Jones2* 1Department of Microbiology, Faculty of Science, Prince of Songkla University, Hat Yai, Songkhla, 90112, Thailand; 2Bioresources Technology Unit, National Center for Genetic Engineering and Biotechnology (BIOTEC), 113 Thailand Science Park, Paholyothin Road, Khlong 1, Khlong Luang, Pathum Thani, 12120, Thailand; 3National Center for Biothechnology Information, National Library of Medicine, National Institutes of Health, 45 Center Drive, MSC 6510, Bethesda, Maryland 20892-6510, U.S.A.; 4Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, 97331, U.S.A.; 5Institute of Marine Sciences, University of North Carolina at Chapel Hill, Morehead City, North Carolina 28557, U.S.A.; 6Faculty of Agriculture & Life Sciences, Hirosaki University, Bunkyo-cho 3, Hirosaki, Aomori 036-8561, Japan *Correspondence: E.B. Gareth Jones, [email protected] Abstract: Phylogenetic analyses of four nuclear genes, namely the large and small subunits of the nuclear ribosomal RNA, transcription elongation factor 1-alpha and the second largest RNA polymerase II subunit, established that the ecological group of marine bitunicate ascomycetes has representatives in the orders Capnodiales, Hysteriales, Jahnulales, Mytilinidiales, Patellariales and Pleosporales. Most of the fungi sequenced were intertidal mangrove taxa and belong to members of 12 families in the Pleosporales: Aigialaceae, Didymellaceae, Leptosphaeriaceae, Lenthitheciaceae, Lophiostomataceae, Massarinaceae, Montagnulaceae, Morosphaeriaceae, Phaeosphaeriaceae, Pleosporaceae, Testudinaceae and Trematosphaeriaceae. Two new families are described: Aigialaceae and Morosphaeriaceae, and three new genera proposed: Halomassarina, Morosphaeria and Rimora. -
Two Pleosporalean Root-Colonizing Fungi, Fuscosphaeria Hungarica Gen
Mycological Progress (2021) 20:39–50 https://doi.org/10.1007/s11557-020-01655-8 ORIGINAL ARTICLE Two pleosporalean root-colonizing fungi, Fuscosphaeria hungarica gen. et sp. nov. and Delitschia chaetomioides, from a semiarid grassland in Hungary Alexandra Pintye1 & Dániel G. Knapp2 Received: 15 May 2020 /Revised: 14 November 2020 /Accepted: 29 November 2020 # The Author(s) 2020 Abstract In this study, we investigated two unidentified lineages of root-colonizing fungi belonging to the order Pleosporales (Dothideomycetes), which were isolated from Festuca vaginata (Poaceae), a dominant grass species in the semiarid sandy grass- lands of Hungary. For molecular phylogenetic studies, seven loci (internal transcribed spacer, partial large subunit and small subunit region of nrRNA, partial transcription elongation factor 1-α, RNA polymerase II largest subunit, RNA polymerase II second largest subunit, and ß-tubulin genes) were amplified and sequenced. Based on morphology and multilocus phylogenetic analyses, we found that one lineage belonged to Delitschia chaetomioides P. Karst. (Delitschiaceae), and the isolates of the other lineage represented a novel monotypic genus in the family Trematosphaeriaceae (suborder Massarineae). For this lineage, we proposed a new genus, Fuscosphaeria, represented by a single species, F. hungarica. In both lineages, only immature and degenerated sporocarps could be induced. These were sterile, black, globose, or depressed globose structures with numerous mycelioid appendages submerged in culture media or on the -
Amplicon-Based Sequencing of Soil Fungi from Wood Preservative Test Sites
ORIGINAL RESEARCH published: 18 October 2017 doi: 10.3389/fmicb.2017.01997 Amplicon-Based Sequencing of Soil Fungi from Wood Preservative Test Sites Grant T. Kirker 1*, Amy B. Bishell 1, Michelle A. Jusino 2, Jonathan M. Palmer 2, William J. Hickey 3 and Daniel L. Lindner 2 1 FPL, United States Department of Agriculture-Forest Service (USDA-FS), Durability and Wood Protection, Madison, WI, United States, 2 NRS, United States Department of Agriculture-Forest Service (USDA-FS), Center for Forest Mycology Research, Madison, WI, United States, 3 Department of Soil Science, University of Wisconsin-Madison, Madison, WI, United States Soil samples were collected from field sites in two AWPA (American Wood Protection Association) wood decay hazard zones in North America. Two field plots at each site were exposed to differing preservative chemistries via in-ground installations of treated wood stakes for approximately 50 years. The purpose of this study is to characterize soil fungal species and to determine if long term exposure to various wood preservatives impacts soil fungal community composition. Soil fungal communities were compared using amplicon-based DNA sequencing of the internal transcribed spacer 1 (ITS1) region of the rDNA array. Data show that soil fungal community composition differs significantly Edited by: Florence Abram, between the two sites and that long-term exposure to different preservative chemistries National University of Ireland Galway, is correlated with different species composition of soil fungi. However, chemical analyses Ireland using ICP-OES found levels of select residual preservative actives (copper, chromium and Reviewed by: Seung Gu Shin, arsenic) to be similar to naturally occurring levels in unexposed areas. -
9B Taxonomy to Genus
Fungus and Lichen Genera in the NEMF Database Taxonomic hierarchy: phyllum > class (-etes) > order (-ales) > family (-ceae) > genus. Total number of genera in the database: 526 Anamorphic fungi (see p. 4), which are disseminated by propagules not formed from cells where meiosis has occurred, are presently not grouped by class, order, etc. Most propagules can be referred to as "conidia," but some are derived from unspecialized vegetative mycelium. A significant number are correlated with fungal states that produce spores derived from cells where meiosis has, or is assumed to have, occurred. These are, where known, members of the ascomycetes or basidiomycetes. However, in many cases, they are still undescribed, unrecognized or poorly known. (Explanation paraphrased from "Dictionary of the Fungi, 9th Edition.") Principal authority for this taxonomy is the Dictionary of the Fungi and its online database, www.indexfungorum.org. For lichens, see Lecanoromycetes on p. 3. Basidiomycota Aegerita Poria Macrolepiota Grandinia Poronidulus Melanophyllum Agaricomycetes Hyphoderma Postia Amanitaceae Cantharellales Meripilaceae Pycnoporellus Amanita Cantharellaceae Abortiporus Skeletocutis Bolbitiaceae Cantharellus Antrodia Trichaptum Agrocybe Craterellus Grifola Tyromyces Bolbitius Clavulinaceae Meripilus Sistotremataceae Conocybe Clavulina Physisporinus Trechispora Hebeloma Hydnaceae Meruliaceae Sparassidaceae Panaeolina Hydnum Climacodon Sparassis Clavariaceae Polyporales Gloeoporus Steccherinaceae Clavaria Albatrellaceae Hyphodermopsis Antrodiella -
<I>Tothia Fuscella</I>
ISSN (print) 0093-4666 © 2011. Mycotaxon, Ltd. ISSN (online) 2154-8889 MYCOTAXON http://dx.doi.org/10.5248/118.203 Volume 118, pp. 203–211 October–December 2011 Epitypification, morphology, and phylogeny of Tothia fuscella Haixia Wu1, Walter M. Jaklitsch2, Hermann Voglmayr2 & Kevin D. Hyde1, 3, 4* 1 International Fungal Research and Development Centre, Key Laboratory of Resource Insect Cultivation & Utilization, State Forestry Administration, The Research Institute of Resource Insects, Chinese Academy of Forestry, Kunming, 650224, PR China 2 Department of Systematic and Evolutionary Botany, Faculty Centre of Biodiversity, University of Vienna, Rennweg 14, A-1030 Wien, Austria 3 School of Science, Mae Fah Luang University, Tasud, Muang, Chiang Rai 57100, Thailand 4 Botany and Microbiology Department, College of Science, King Saud University, Riyadh, 11442, Saudi Arabia *Correspondence to: [email protected] Abstract — The holotype of Tothia fuscella has been re-examined and is re-described and illustrated. An identical fresh specimen from Austria is used to designate an epitype with herbarium material and a living culture. Sequence analyses show T. fuscella to be most closely related to Venturiaceae and not Microthyriaceae, to which it was previously referred. Key words — Dothideomycetes, molecular phylogeny, taxonomy Introduction We have been re-describing and illustrating the generic types of Dothideomycetes (Zhang et al. 2008, 2009, Wu et al. 2010, 2011, Li et al. 2011) and have tried where possible to obtain fresh specimens for epitypification and use molecular analyses to provide a natural classification. Our previous studies of genera in the Microthyriaceae, a poorly known family within the Dothideomycetes, have resulted in several advances (Wu et al. -
Pseudodidymellaceae Fam. Nov.: Phylogenetic Affiliations Of
available online at www.studiesinmycology.org STUDIES IN MYCOLOGY 87: 187–206 (2017). Pseudodidymellaceae fam. nov.: Phylogenetic affiliations of mycopappus-like genera in Dothideomycetes A. Hashimoto1,2, M. Matsumura1,3, K. Hirayama4, R. Fujimoto1, and K. Tanaka1,3* 1Faculty of Agriculture and Life Sciences, Hirosaki University, 3 Bunkyo-cho, Hirosaki, Aomori, 036-8561, Japan; 2Research Fellow of the Japan Society for the Promotion of Science, 5-3-1 Kojimachi, Chiyoda-ku, Tokyo, 102-0083, Japan; 3The United Graduate School of Agricultural Sciences, Iwate University, 18–8 Ueda 3 chome, Morioka, 020-8550, Japan; 4Apple Experiment Station, Aomori Prefectural Agriculture and Forestry Research Centre, 24 Fukutami, Botandaira, Kuroishi, Aomori, 036-0332, Japan *Correspondence: K. Tanaka, [email protected] Abstract: The familial placement of four genera, Mycodidymella, Petrakia, Pseudodidymella, and Xenostigmina, was taxonomically revised based on morphological observations and phylogenetic analyses of nuclear rDNA SSU, LSU, tef1, and rpb2 sequences. ITS sequences were also provided as barcode markers. A total of 130 sequences were newly obtained from 28 isolates which are phylogenetically related to Melanommataceae (Pleosporales, Dothideomycetes) and its relatives. Phylo- genetic analyses and morphological observation of sexual and asexual morphs led to the conclusion that Melanommataceae should be restricted to its type genus Melanomma, which is characterised by ascomata composed of a well-developed, carbonaceous peridium, and an aposphaeria-like coelomycetous asexual morph. Although Mycodidymella, Petrakia, Pseudodidymella, and Xenostigmina are phylogenetically related to Melanommataceae, these genera are characterised by epi- phyllous, lenticular ascomata with well-developed basal stroma in their sexual morphs, and mycopappus-like propagules in their asexual morphs, which are clearly different from those of Melanomma. -
Taxonomic Utility of Old Names in Current Fungal Classification and Nomenclature: Conflicts, Confusion & Clarifications
Mycosphere 7 (11): 1622–1648 (2016) www.mycosphere.org ISSN 2077 7019 Article – special issue Doi 10.5943/mycosphere/7/11/2 Copyright © Guizhou Academy of Agricultural Sciences Taxonomic utility of old names in current fungal classification and nomenclature: Conflicts, confusion & clarifications Dayarathne MC1,2, Boonmee S1,2, Braun U7, Crous PW8, Daranagama DA1, Dissanayake AJ1,6, Ekanayaka H1,2, Jayawardena R1,6, Jones EBG10, Maharachchikumbura SSN5, Perera RH1, Phillips AJL9, Stadler M11, Thambugala KM1,3, Wanasinghe DN1,2, Zhao Q1,2, Hyde KD1,2, Jeewon R12* 1Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand 2Key Laboratory for Plant Biodiversity and Biogeography of East Asia (KLPB), Kunming Institute of Botany, Chinese Academy of Science, Kunming 650201, Yunnan China3Guizhou Key Laboratory of Agricultural Biotechnology, Guizhou Academy of Agricultural Sciences, Guiyang 550006, Guizhou, China 4Engineering Research Center of Southwest Bio-Pharmaceutical Resources, Ministry of Education, Guizhou University, Guiyang 550025, Guizhou Province, China5Department of Crop Sciences, College of Agricultural and Marine Sciences, Sultan Qaboos University, P.O. Box 34, Al-Khod 123,Oman 6Institute of Plant and Environment Protection, Beijing Academy of Agriculture and Forestry Sciences, No 9 of ShuGuangHuaYuanZhangLu, Haidian District Beijing 100097, China 7Martin Luther University, Institute of Biology, Department of Geobotany, Herbarium, Neuwerk 21, 06099 Halle, Germany 8Westerdijk Fungal Biodiversity Institute, Uppsalalaan 8, 3584CT Utrecht, The Netherlands. 9University of Lisbon, Faculty of Sciences, Biosystems and Integrative Sciences Institute (BioISI), Campo Grande, 1749-016 Lisbon, Portugal. 10Department of Entomology and Plant Pathology, Faculty of Agriculture, Chiang Mai University, 50200, Thailand 11Helmholtz-Zentrum für Infektionsforschung GmbH, Dept. -
Towards a Phylogenetic Clarification of Lophiostoma / Massarina and Morphologically Similar Genera in the Pleosporales
Fungal Diversity Towards a phylogenetic clarification of Lophiostoma / Massarina and morphologically similar genera in the Pleosporales Zhang, Y.1, Wang, H.K.2, Fournier, J.3, Crous, P.W.4, Jeewon, R.1, Pointing, S.B.1 and Hyde, K.D.5,6* 1Division of Microbiology, School of Biological Sciences, The University of Hong Kong, Pokfulam Road, Hong Kong SAR, P.R. China 2Biotechnology Institute, Zhejiang University, 310029, P.R. China 3Las Muros, Rimont, Ariège, F 09420, France 4Centraalbureau voor Schimmelcultures, Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD, Utrecht, The Netherlands 5School of Science, Mae Fah Luang University, Tasud, Muang, Chiang Rai 57100, Thailand 6International Fungal Research & Development Centre, The Research Institute of Resource Insects, Chinese Academy of Forestry, Kunming, Yunnan, P.R. China 650034 Zhang, Y., Wang, H.K., Fournier, J., Crous, P.W., Jeewon, R., Pointing, S.B. and Hyde, K.D. (2009). Towards a phylogenetic clarification of Lophiostoma / Massarina and morphologically similar genera in the Pleosporales. Fungal Diversity 38: 225-251. Lophiostoma, Lophiotrema and Massarina are similar genera that are difficult to distinguish morphologically. In order to obtain a better understanding of these genera, lectotype material of the generic types, Lophiostoma macrostomum, Lophiotrema nucula and Massarina eburnea were examined and are re-described. The phylogeny of these genera is investigated based on the analysis of 26 Lophiostoma- and Massarina-like taxa and three genes – 18S, 28S rDNA and RPB2. These taxa formed five well-supported sub-clades in Pleosporales. This study confirms that both Lophiostoma and Massarina are polyphyletic. Massarina-like taxa can presently be differentiated into two groups – the Lentithecium group and the Massarina group. -
A Higher-Level Phylogenetic Classification of the Fungi
mycological research 111 (2007) 509–547 available at www.sciencedirect.com journal homepage: www.elsevier.com/locate/mycres A higher-level phylogenetic classification of the Fungi David S. HIBBETTa,*, Manfred BINDERa, Joseph F. BISCHOFFb, Meredith BLACKWELLc, Paul F. CANNONd, Ove E. ERIKSSONe, Sabine HUHNDORFf, Timothy JAMESg, Paul M. KIRKd, Robert LU¨ CKINGf, H. THORSTEN LUMBSCHf, Franc¸ois LUTZONIg, P. Brandon MATHENYa, David J. MCLAUGHLINh, Martha J. POWELLi, Scott REDHEAD j, Conrad L. SCHOCHk, Joseph W. SPATAFORAk, Joost A. STALPERSl, Rytas VILGALYSg, M. Catherine AIMEm, Andre´ APTROOTn, Robert BAUERo, Dominik BEGEROWp, Gerald L. BENNYq, Lisa A. CASTLEBURYm, Pedro W. CROUSl, Yu-Cheng DAIr, Walter GAMSl, David M. GEISERs, Gareth W. GRIFFITHt,Ce´cile GUEIDANg, David L. HAWKSWORTHu, Geir HESTMARKv, Kentaro HOSAKAw, Richard A. HUMBERx, Kevin D. HYDEy, Joseph E. IRONSIDEt, Urmas KO˜ LJALGz, Cletus P. KURTZMANaa, Karl-Henrik LARSSONab, Robert LICHTWARDTac, Joyce LONGCOREad, Jolanta MIA˛ DLIKOWSKAg, Andrew MILLERae, Jean-Marc MONCALVOaf, Sharon MOZLEY-STANDRIDGEag, Franz OBERWINKLERo, Erast PARMASTOah, Vale´rie REEBg, Jack D. ROGERSai, Claude ROUXaj, Leif RYVARDENak, Jose´ Paulo SAMPAIOal, Arthur SCHU¨ ßLERam, Junta SUGIYAMAan, R. Greg THORNao, Leif TIBELLap, Wendy A. UNTEREINERaq, Christopher WALKERar, Zheng WANGa, Alex WEIRas, Michael WEISSo, Merlin M. WHITEat, Katarina WINKAe, Yi-Jian YAOau, Ning ZHANGav aBiology Department, Clark University, Worcester, MA 01610, USA bNational Library of Medicine, National Center for Biotechnology Information, -
Morphology and Phylogeny of Mycopepon
Mycosphere 9(4): 779–789 (2018) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/9/4/6 Copyright © Guizhou Academy of Agricultural Sciences Morphology and phylogeny of Mycopepon Liu LL1,2, Long QD1,3, Kang JC4, Zhang X1,3, Hyde KD5, Shen XC1,3* and Li QR1,3* 1 State Key Laboratory of Functions and Applications of Medicinal Plants, Guizhou Medical University, Guiyang 550004, People’s Republic of China 2 Immune Cells and Antibody Engineering Research Center of Guizhou Province/ Key Laboratory of Biology and Medical Engineering, Guizhou Medical University, Guiyang 550004, People’s Republic of China 3 The Key Lab of Optimal Utilization of Natural Medicine Resources, School of Pharmaceutical Sciences, Guizhou Medical University, University Town, Guian New District, Guizhou 550025, People’s Republic of China 4 The Engineering and Research Center for Southwest Bio-Pharmaceutical Resources of National Education Ministry of China, 3Guizhou University Guiyang 550025, People’s Republic of China 5 Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand Liu LL, Long QD, Kang JC, Zhang X, Hyde KD, Shen XC, Li QR 2018 – Morphology, and phylogeny of Mycopepon. Mycosphere 9(4), 779–789, Doi 10.5943/mycosphere/9/4/6 Abstract Two species similar to Mycopepon were found on bamboo in Guizhou Province, China. These species are introduced as the new species Mycopepon bambusae M. fusoidisporus, based on their morphological characteristics and phylogenetic analyses of LSU and SSU sequences data in this paper. Descriptions and illustrations for both species are provided. Mycopepon smithii var. mexicanum is raised to specific rank as M. -
An Evaluation of the Monophyly of Massarina Based on Ribosomal DNA Sequences
~\.l~rolo,~~,94(5), 2002, pp 803-813 O 2002 b\ The M\cological Socieh of Ame~ica,La~rence, KS 660448895 An evaluation of the monophyly of Massarina based on ribosomal DNA sequences Edward C. Y. Liew cies were included in Massam'na, the first being Mas- Centre for Research in Fungal Diversity, Department of sam'na eburnea (Tul. & C. Tul.) Sacc., but a type was Ecology & Biodiversity, The CTniversityof Hong Kong, not indicated, nor was the genus placed in a family. Pokfulam Road, Hong Kong SAR, PR China Massam'na eburnea was later selected as lectotype of Andre Aptroot this genus by Clements and Shear (1957) and was Centraalbureau voor Schimmelcultures, P 0. Box redescribed and illustrated by Hyde (1995a). 85167, NL-3508 AD Utrecht, The Netherlnnds A new family, the Massarinaceae Munk, was intro- Kevin D. Hydel duced by Munk (1956) to accommodate Massam'na. This family was accepted by various authors (Eriksson Centle for Research zn Fungal Dzverszty, Department of Ecolqg & Bzodzversztj, The Unzverszty of Hong Kong 1981, 1982, Eriksson and Hawksworth 1985). Bose Pokfulam Road, Hong Kong SAR, PR Chzna (1961), in his review of Massam'na, noted that doubts had previously been expressed several times about whether the introduction of a new family was justified Abstract: The monophyletic status of the genus (Holm et a1 1957, Scheinpflug 1958).He subsequent- Massam'na was evaluated on the basis of phylogenetic ly placed Massam'na in the existing Pleosporaceae, analysis of the partial small subunit gene (SSU), in- due to the lack of distinctive characters distinguish- ternal transcribed spacers (ITS 1 & 2), and 5.8s gene ing the two families.