Modeling Shifts in Habitat Due to Sea Level Rise
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Article Evolutionary Dynamics of the OR Gene Repertoire in Teleost Fishes
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Article Evolutionary dynamics of the OR gene repertoire in teleost fishes: evidence of an association with changes in olfactory epithelium shape Maxime Policarpo1, Katherine E Bemis2, James C Tyler3, Cushla J Metcalfe4, Patrick Laurenti5, Jean-Christophe Sandoz1, Sylvie Rétaux6 and Didier Casane*,1,7 1 Université Paris-Saclay, CNRS, IRD, UMR Évolution, Génomes, Comportement et Écologie, 91198, Gif-sur-Yvette, France. 2 NOAA National Systematics Laboratory, National Museum of Natural History, Smithsonian Institution, Washington, D.C. 20560, U.S.A. 3Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington, D.C., 20560, U.S.A. 4 Independent Researcher, PO Box 21, Nambour QLD 4560, Australia. 5 Université de Paris, Laboratoire Interdisciplinaire des Energies de Demain, Paris, France 6 Université Paris-Saclay, CNRS, Institut des Neurosciences Paris-Saclay, 91190, Gif-sur- Yvette, France. 7 Université de Paris, UFR Sciences du Vivant, F-75013 Paris, France. * Corresponding author: e-mail: [email protected]. !1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Teleost fishes perceive their environment through a range of sensory modalities, among which olfaction often plays an important role. -
Female Choice Undermines the Emergence of Strong Sexual Isolation Between Locally Adapted Populations of Atlantic Mollies (Poecilia Mexicana)
G C A T T A C G G C A T genes Article Female Choice Undermines the Emergence of Strong Sexual Isolation between Locally Adapted Populations of Atlantic Mollies (Poecilia mexicana) Claudia Zimmer 1,2,*, Rüdiger Riesch 3 ID , Jonas Jourdan 4 ID , David Bierbach 5, Lenin Arias-Rodriguez 6 and Martin Plath 1,7 1 College of Animal Science & Technology, Northwest A&F University, Yangling 712100, China; [email protected] 2 Department of Ecology and Evolution, Goethe University of Frankfurt, Max-von-Laue-Straße 13, D-60438 Frankfurt am Main, Germany 3 Centre for Ecology, Evolution and Behaviour, School of Biological Sciences, Royal Holloway University of London, Egham, Surrey TW20 0EX, UK; [email protected] 4 Department of River Ecology and Conservation, Senckenberg Research Institute and Natural History Museum Frankfurt, D-63571 Gelnhausen, Germany; [email protected] 5 Department of Biology and Ecology of Fishes, Leibniz-Institute of Freshwater Ecology and Inland Fisheries, Müggelseedamm 310, D-12587 Berlin, Germany; [email protected] 6 División Académica de Ciencias Biológicas, Universidad Juárez Autónoma de Tabasco (UJAT), 86150 Villahermosa, Tabasco, Mexico; [email protected] 7 Shaanxi Key Laboratory of Molecular Biology for Agriculture, Northwest A&F University, Yangling 712100, China * Correspondence: [email protected] Received: 24 January 2018; Accepted: 25 April 2018; Published: 2 May 2018 Abstract: Divergent selection between ecologically dissimilar habitats promotes local adaptation, which can lead to reproductive isolation (RI). Populations in the Poecilia mexicana species complex have independently adapted to toxic hydrogen sulfide and show varying degrees of RI. Here, we examined the variation in the mate choice component of prezygotic RI. -
Andrea RAZ-GUZMÁN1*, Leticia HUIDOBRO2, and Virginia PADILLA3
ACTA ICHTHYOLOGICA ET PISCATORIA (2018) 48 (4): 341–362 DOI: 10.3750/AIEP/02451 AN UPDATED CHECKLIST AND CHARACTERISATION OF THE ICHTHYOFAUNA (ELASMOBRANCHII AND ACTINOPTERYGII) OF THE LAGUNA DE TAMIAHUA, VERACRUZ, MEXICO Andrea RAZ-GUZMÁN1*, Leticia HUIDOBRO2, and Virginia PADILLA3 1 Posgrado en Ciencias del Mar y Limnología, Universidad Nacional Autónoma de México, Ciudad de México 2 Instituto Nacional de Pesca y Acuacultura, SAGARPA, Ciudad de México 3 Facultad de Ciencias, Universidad Nacional Autónoma de México, Ciudad de México Raz-Guzmán A., Huidobro L., Padilla V. 2018. An updated checklist and characterisation of the ichthyofauna (Elasmobranchii and Actinopterygii) of the Laguna de Tamiahua, Veracruz, Mexico. Acta Ichthyol. Piscat. 48 (4): 341–362. Background. Laguna de Tamiahua is ecologically and economically important as a nursery area that favours the recruitment of species that sustain traditional fisheries. It has been studied previously, though not throughout its whole area, and considering the variety of habitats that sustain these fisheries, as well as an increase in population growth that impacts the system. The objectives of this study were to present an updated list of fish species, data on special status, new records, commercial importance, dominance, density, ecotic position, and the spatial and temporal distribution of species in the lagoon, together with a comparison of Tamiahua with 14 other Gulf of Mexico lagoons. Materials and methods. Fish were collected in August and December 1996 with a Renfro beam net and an otter trawl from different habitats throughout the lagoon. The species were identified, classified in relation to special status, new records, commercial importance, density, dominance, ecotic position, and spatial distribution patterns. -
(Megalagrion Nesiotes) and Pacific Hawaiian Damselfly
32490 Federal Register / Vol. 74, No. 129 / Wednesday, July 8, 2009 / Proposed Rules rules governing permissible ex parte FOR FURTHER INFORMATION CONTACT: PART 73—RADIO BROADCAST contacts. Joyce L. Bernstein, SERVICES For information regarding proper [email protected], Media Bureau, filing procedures for comments, see 47 (202) 418–1600. 1. The authority citation for part 73 continues to read as follows: CFR 1.415 and 1.420. SUPPLEMENTARY INFORMATION: This is a Authority: 47 U.S.C. 154, 303, 334, 336. List of Subjects in 47 CFR Part 73 synopsis of the Commission’s Notice of Proposed Rule Making, MB Docket No. § 73.622(i) [Amended] Television, Television broadcasting. 09–11, adopted June 25, 2009, and 2. Section 73.622(i), the Post- For the reasons discussed in the released June 26, 2009. The full text of Transition Table of DTV Allotments preamble, the Federal Communications this document is available for public under Colorado, is amended by adding Commission proposes to amend 47 CFR inspection and copying during normal DTV channel 49 and removing DTV part 73 as follows: business hours in the FCC’s Reference channel 10 at Colorado Springs. Information Center at Portals II, CY– PART 73—RADIO BROADCAST A257, 445 12th Street, SW., Federal Communications Commission. SERVICES Washington, DC 20554. This document Clay C. Pendarvis, 1. The authority citation for part 73 will also be available via ECFS (http:// Associate Chief, Video Division, Media continues to read as follows: www.fcc.gov/cgb/ecfs/). (Documents Bureau. will be available electronically in ASCII, [FR Doc. E9–16128 Filed 7–7–09; 8:45 am] Authority: 47 U.S.C. -
PHYSIOLOGICAL and TRANSCRIPTOMIC ASPECTS of ADAPTATION to EXTREME ENVIRONMENTS by COURTNEY NICOLE PASSOW B.S., Texas A&M Un
PHYSIOLOGICAL AND TRANSCRIPTOMIC ASPECTS OF ADAPTATION TO EXTREME ENVIRONMENTS by COURTNEY NICOLE PASSOW B.S., Texas A&M University, 2011 AN ABSTRACT OF A DISSERTATION submitted in partial fulfillment of the requirements for the degree DOCTOR OF PHILOSOPHY Division of Biology College of Arts and Sciences KANSAS STATE UNIVERSITY Manhattan, Kansas 2016 Abstract Extremophiles are organisms with the ability to survive in environments characterized by strong physicochemical stressors lethal to most other organisms, providing excellent models to further our understanding of life’s capacities and limitations to deal with far-from-average conditions. I studied how physiological processes varied among fish residing in starkly different environmental conditions to understand how organisms cope with extreme environments and disentangle the roles of short-term plastic responses and evolved population differences in shaping physiological responses. I used the Poecilia mexicana model, a series of extremophile fish populations that has colonized toxic hydrogen sulfide (H2S) rich springs and caves, to address three major objectives: (1) I investigated the energetic consequences of life in extreme environments and tested whether predicted reductions in organismal energy demands evolved repeatedly along replicated environmental gradients. (2) I characterized variation in gene expression among populations and organs to test for interactive effects between different stressors and identify potential physiological mechanisms underlying adaptation to H2S and cave environments. (3) I conducted common garden and H2S-exposure experiments to test how evolutionary change and plasticity interact to shape variation in gene expression observed in nature. To address these objectives, I measured variation in metabolic physiology and quantified variation in physiological processes through genome-wide gene expression analyses. -
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Chou et al. BMC Genomics 2018, 19(Suppl 2):103 DOI 10.1186/s12864-018-4463-x RESEARCH Open Access The aquatic animals’ transcriptome resource for comparative functional analysis Chih-Hung Chou1,2†, Hsi-Yuan Huang1,2†, Wei-Chih Huang1,2†, Sheng-Da Hsu1, Chung-Der Hsiao3, Chia-Yu Liu1, Yu-Hung Chen1, Yu-Chen Liu1,2, Wei-Yun Huang2, Meng-Lin Lee2, Yi-Chang Chen4 and Hsien-Da Huang1,2* From The Sixteenth Asia Pacific Bioinformatics Conference 2018 Yokohama, Japan. 15-17 January 2018 Abstract Background: Aquatic animals have great economic and ecological importance. Among them, non-model organisms have been studied regarding eco-toxicity, stress biology, and environmental adaptation. Due to recent advances in next-generation sequencing techniques, large amounts of RNA-seq data for aquatic animals are publicly available. However, currently there is no comprehensive resource exist for the analysis, unification, and integration of these datasets. This study utilizes computational approaches to build a new resource of transcriptomic maps for aquatic animals. This aquatic animal transcriptome map database dbATM provides de novo assembly of transcriptome, gene annotation and comparative analysis of more than twenty aquatic organisms without draft genome. Results: To improve the assembly quality, three computational tools (Trinity, Oases and SOAPdenovo-Trans) were employed to enhance individual transcriptome assembly, and CAP3 and CD-HIT-EST software were then used to merge these three assembled transcriptomes. In addition, functional annotation analysis provides valuable clues to gene characteristics, including full-length transcript coding regions, conserved domains, gene ontology and KEGG pathways. Furthermore, all aquatic animal genes are essential for comparative genomics tasks such as constructing homologous gene groups and blast databases and phylogenetic analysis. -
Nonindigenous Freshwater and Estuarine Species
NONINDIGENOUS FRESHWATER AND ESTUARINE SPECIES INTRODUCTIONS AND THEIR POTENTIAL TO AFFECT SPORTFISHING IN THE LOWER STREAM AND ESTUARINE REGIONS OF THE SOUTH AND WEST SHORES OF OAHU, HAWAII February 2000 Hawaii Biological Survey Bishop Museum Cover From upper left corner: Waikiki in 1886 (A. Mitchell photograph, CPBM 56,428, Bishop Museum Archives) at the mouth of Piinaio Stream where the current Ala Wai Canal or present day Manoa/Palolo Stream empties into the ocean. Upper right photograph: taken at lower Manoa/Palolo stream mouth estuary in the year 2000, from the Date Street Bridge. Lower left photograph: Waikahalulu Falls at Nuuanu Stream in the year 2000 at the mouth of Nuuanu Stream; sampling for Nuuanu Stream began immediately downstream of Waikahalulu Falls. Lower right photograph: taken between 1900-1910 (A. Gartley photograph, CA 1,721, Bishop Museum Archives) at Waikahalulu Falls, Nuuanu Stream, notice lack of vegetation and desert look in this photograph. NONINDIGENOUS FRESHWATER AND ESTUARINE SPECIES INTRODUCTIONS AND THEIR POTENTIAL TO AFFECT SPORTFISHING IN THE LOWER STREAM AND ESTUARINE REGIONS OF THE SOUTH AND WEST SHORES OF OAHU, HAWAII Final Report prepared for the Hawaii Department of Land and Natural Resources, Division of Aquatic Resources R.A. Englund K. Arakaki D.J. Preston S.L. Coles L.G. Eldredge Hawaii Biological Survey Bishop Museum Bishop Museum Technical Report No. 17 Honolulu, Hawaii February 2000 Published by BISHOP MUSEUM The State Museum of Natural and Cultural History 1525 Bernice Street Honolulu, Hawai’i 96817-2704, USA Copyright 2000 Bishop Museum All Rights Reserved Printed in the United States of America ISSN 1085-455X Contribution No. -
Dataset on Freshwater Fishes of Hidalgo State( Mexico)
A peer-reviewed open-access journal ZooKeys 403: 67–109Hidalgo (2014) fishes: Dataset on freshwater fishes of Hidalgo state( Mexico)... 97 doi: 10.3897/zookeys.403.7149 DATA PAPER www.zookeys.org Launched to accelerate biodiversity research Hidalgo Fishes: Dataset on freshwater fishes of Hidalgo state (Mexico) in the MZNA fish collection of the University of Navarra (Spain) David Galicia1, Griselda Pulido-Flores2, Rafael Miranda1, Scott Monks2, Ana Amezcua-Martínez1, María Imas-Lecumberri1, Angel Chaves-Illana1, Arturo H. Ariño1 1 University of Navarra, Irunlarrea 1, 31008, Pamplona, Spain 2 University of the Hidalgo State, Centro de Investigaciones Biológicas, Ciudad del Conocimiento, 42184, Pachuca, Mexico Corresponding author: David Galicia ([email protected]) Academic editor: V. Chavan | Received 27 January 2014 | Accepted 31 March 2014 | Published 17 April 2014 Citation: Galicia D, Pulido-Flores G, Miranda R, Monks S,Amezcua-Martínez A, Imas-Lecumberri M, Chaves-Illana A, Ariño AH (2014) Hidalgo Fishes: Dataset on freshwater fishes of Hidalgo state (Mexico) in the MZNA fish collection of the University of Navarra (Spain). ZooKeys 403: 97–109. doi: 10.3897/zookeys.403.7149 GBIF key: http://gbrds.gbif. org/browse/agent?uuid=28c1c18b-64d8-4691-acdb-73e5653292f8 Resource Citation: University of Navarra (2014) Hidalgo Fishes: Dataset on freshwater fishes of Hidalgo state (Mexico) in the MZNA fish collection of the University of Navarra (Spain). 7403 data records. Contributed by Galicia D, Miranda R, Monks S, Pulido-Flores G, Ariño AH, Amezcua A, Imas M, Chaves A, Escala MC, Alemán-García B, Escorcia- Ignacio R, Vilches A, Bautista-Hernández CE, Leunda PM, Gaspar S and A López-Morales. -
Poecilia Latipinna (Lesueur, 1821) (Cyprinodontiformes: Poeciliidae) in Africa (Lake Manzala, Egypt)
BioInvasions Records (2020) Volume 9, Issue 3: 580–587 CORRECTED PROOF Rapid Communication First record of non-native sailfin molly Poecilia latipinna (Lesueur, 1821) (Cyprinodontiformes: Poeciliidae) in Africa (Lake Manzala, Egypt) Mohamed A. Abu El-Regal1,2,* and Lafi S. Al-Solami1 1Marine Biology Department, Faculty of marine Science, King Abdulaziz University, Jeddah, Kingdom of Saudi Arabia 2Marine Science Department, Faculty of Science, Port Said University, Egypt *Corresponding author E-mail: [email protected] Citation: Abu El-Regal MA, Al-Solami LS (2020) First record of non-native sailfin Abstract molly Poecilia latipinna (Lesueur, 1821) (Cyprinodontiformes: Poeciliidae) in The sailfin molly, Poecilia latipinna (Lesueur, 1821), is a popular aquarium fish, native Africa (Lake Manzala, Egypt). to the eastern coastline of North America. It has been introduced to many countries BioInvasions Records 9(3): 580–587, worldwide as biological control agent and through releases from aquarium hobbyists. https://doi.org/10.3391/bir.2020.9.3.14 The aim of this paper is to report the presence of sailfin molly in a brackish lake in Received: 10 March 2020 northern Egypt (Lake Manzala). Twenty-five individuals (8 males and 17 females) Accepted: 30 April 2020 of sailfin molly were incidentally collected while fishing for tilapia fish in the lake. Published: 24 June 2020 All individuals were identified as P. latipinna based on morphological features and this is possibly the first documented record of sailfin molly in Africa. Thematic editor: Michal Janáč Copyright: © Abu El-Regal and Al-Solami Key words: alien fish, introduction, aquarium trade, northern lake, Mediterranean Sea This is an open access article distributed under terms of the Creative Commons Attribution License (Attribution 4.0 International - CC BY 4.0). -
State of Hawai'i Aquatic Invasive Species (AIS) Management Plan
FINAL VERSION State of Hawai‘i Aquatic Invasive Species (AIS) Management Plan September 2003 SSttaattee ooff HHaawwaaii‘‘ii Aquatic Invasive Species Management Plan Final Version - September 2003 The Department of Land and Natural Resources, Division of Aquatic Resources Prepared through: Andrea D. Shluker, The Nature Conservancy of Hawai‘i This plan was prepared in conjunction with numerous representatives from Federal, State, industry, and non- governmental organizations. This includes the following Steering Committee members (listed in alphabetical order): Scott Atkinson, The Nature Conservancy, Robbie Kane, Hawai‘i Tourism Authority, Earl Campbell, US Fish and Wildlife Service, Domingo Cravalho, Hawai‘i Department of Agriculture, Lu Eldredge, Bishop Museum, Ron Englund, Bishop Museum, Scott Godwin, Bishop Museum, Dale Hazelhurst, Matson Shipping, Cindy Hunter, University of Hawai‘i, Jo-Anne Kushima, Department of Land and Natural Resources, Division of Aquatic Resources, Kenneth Matsui, Pets Pacifica/Petland, Kim Moffie, Hawai‘i Audubon Society/Pacific Fisheries Coalition, Paul Murakawa, Department of Land and Natural Resources, Division of Aquatic Resources, Celia Smith, University of Hawai‘i, Mike Yamamoto, Department of Land and Natural Resources, Division of Aquatic Resources, Leonard Young, Hawai‘i Department of Agriculture, Aquaculture Development Program, Ron Weidenbach, Hawai‘i Aquaculture Association. For further information about the State of Hawai‘i Aquatic Invasive Species Management Plan, please contact William S. Devick, Administrator, Department of Land and Natural Resources, Division of Aquatic Resources, 808-587-0100, [email protected]. Mailing address: Division of Aquatic Resources, 1151 Punchbowl Street, Room 330, Honolulu, HI 96813 This publication of the State of Hawai‘i Division of Aquatic Resources, Department of Land and Natural Resources, The Nature Conservancy of Hawai‘i, and relevant partners was made possible through a generous grant from the Hawai‘i Community Foundation. -
Threats to Native Aquatic Insect Biodiversity in Hawai'i and the Pacific
THREATS TO NATIVE AQUATIC INSECT BIODIVERSITY IN HAWAI'I AND THE PACIFIC, AND CHALLENGES IN THEIR CONSERVATION A DISSERTATION SUBMITTED TO THE GRADUATE DIVISION OF THE UNIVERSITY OF HAWAI 'I IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY IN ENTOMOLOGY AUGUST 2005 By Ronald A. Englund Dissertation Committee: Mark Wright, Chairperson Dan Rubinoff Neal Evenhuis Dan Polhemus Andrew Taylor TABLE OF CONTENTS ACKNOWLEDGEMENTS , ii ABSTRACT iii LIST OF TABLES vi LIST OF FIGURES viii CHAPTER 1. THE IMPACTS OF INTRODUCED POECILIID FISH AND ODONATA ON THE ENDEMIC MEGALAGRION (ODONATA) DAMSELFLIES OF 0'AHU ISLAND, HAWAI'I 1 CHAPTER 2: EVALUATING THE EFFECTS OF INTRODUCED RAINBOW TROUT (Oncorhynchus mykiss) ON NATIVE STREAM INSECTS ON KAUA'I ISLAND, HAWAI'I 40 CHAPTER 3. LONG-TERM MONITORING OF ONE OF THE MOST RESTRICTED INSECT POPULATIONS IN THE UNITED STATES, Megalagrion xanthomelas Selys-Longchamps, 1876, AT TRIPLERARMY MEDICAL CENTER, O'AHU, HAWAI'I... 76 CHAPTER 4. THE LOSS OF NATIVE BIODIVERSITY AND CONTINUING NONINDIGENOUS SPECIES INTRODUCTIONS IN FRESHWATER, ESTUARINE, AND WETLAND COMMUNITIES OF PEARL HARBOR, O'AHU, HAWAIIAN ISLANDS 91 CHAPTER 5. FLOW RESTORATION AND PERSISTENCE OF INTRODUCED SPECIES IN WAlKELE STREAM, 0'AHU 125 CHAPTER 6: INVASIVE SPECIES THREATS TO NATIVE AQUATIC INSECT AND ARTHROPOD BIODIVERSITY IN HAWAI'I, THE PACIFIC AND OTHER RELEVANT AREAS WITH DISCUSSION OF CONSERVATION MEASURES 143 ACKNOWLEDGEMENTS I would like to thank the many people that have made this dissertation possible. I especially would like to extend my thanks and warmest gratitude to my advisor Mark Wright, whose sense of humor and keen intellect made this process as enjoyable as it can be. -
Ichthyological Differentiation and Homogenization in the Pánuco
diversity Article Ichthyological Differentiation and Homogenization in the Pánuco Basin, Mexico Norma Martínez-Lendech 1 , Ana P. Martínez-Falcón 2, Juan Jacobo Schmitter-Soto 3 , Humberto Mejía-Mojica 4, Valentino Sorani-Dalbón 1, Gabriel I. Cruz-Ruíz 5 and Norman Mercado-Silva 1,* 1 Centro de Investigación en Biodiversidad y Conservación, Universidad Autónoma del Estado de Morelos, Cuernavaca Morelos 62209, Mexico; [email protected] (N.M.-L.); [email protected] (V.S.-D.) 2 Centro de Investigaciones Biológicas, Universidad Autónoma del Estado de Hidalgo, Pachuca Hidalgo 42001, Mexico; [email protected] 3 Departamento de Sistemática y Ecología Acuática, El Colegio de la Frontera Sur, Chetumal Quintana Roo 77010, Mexico; [email protected] 4 Centro de Investigaciones Biológicas, Universidad Autónoma del Estado de Morelos, Cuernavaca Morelos 62209, Mexico; [email protected] 5 Centro Interdisciplinario de Investigación para el Desarrollo Integral Regional, Unidad Oaxaca, Instituto Politécnico Nacional, Santa Cruz Xococotlán Oaxaca 71230, Mexico; [email protected] * Correspondence: [email protected] Received: 10 April 2020; Accepted: 5 May 2020; Published: 11 May 2020 Abstract: Species introductions and extirpations are key aspects of aquatic ecosystem change that need to be examined at large geographic and temporal scales. The Pánuco Basin (Eastern Mexico) has high ichthyological diversity and ecological heterogeneity. However, freshwater fish (FWF) introductions and extirpations since the mid-1900s have modified species range and distribution. We examine changes in FWF species composition in and among four sub-basins of the Pánuco by comparing fish collection records pre-1980 to 2018. Currently, the FWF of the Pánuco includes 95 species.