Dynamic pigmentary and structural coloration within cephalopod chromatophore organs Thomas L. Williams1*, Stephen L. Senft2*, Jingjie Yeo3,4,5*, Francisco J. Martín-Martínez4, Alan M. Kuzirian2, Camille A. Martin1, Christopher W. DiBona1, Chun-Teh Chen4, Sean R. Dinneen,1 Hieu T. Nguyen,6 Conor M. Gomes1, Joshua J. C. Rosenthal2, Matthew D. MacManes6, Feixia Chu6, Markus J. Buehler4, Roger T. Hanlon2#, Leila F. Deravi1# 1 Department of Chemistry and Chemical Biology, Northeastern University, Boston, MA 02115, United States. 2 The Marine Biological Laboratory, Woods Hole, MA 02543, United States. 3 Department of Biomedical Engineering, Tufts University, Medford, MA 02155, United States. 4 Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, United States. 5 Institute of High Performance Computing, A*STAR, Singapore 138632, Singapore. 6 Department of Molecular, Cellular, and Biomedical Sciences, University of New Hampshire, Durham, NH 03824, United States. These authors contributed equally: Thomas L. Williams, Stephen L. Senft, Jingjie Yeo Correspondence and requests for materials should be addressed to L.F.D. (email:
[email protected]) or to R.T.H. (email:
[email protected]) 1 Figure S1. QSpec analysis showing both scale and significance of differences in protein expression, as measured by spectral count MS/MS data. The three chromatophores are compared pairwise (Brown vs. Red, Brown vs. Yellow, and Red vs. Yellow) to show how protein abundance differs between brown, red, and yellow chromatophores. For each protein detected in more than one chromatophore, significance is expressed as the negative log of the false discovery rate (- log10(FDR)), where a value greater than 1.301 signifies an FDR of less than 5%, while the magnitude of the differential expression between the two types of chromatophore is shown as the log base two of the fold change (log2((Fold Change)), where a value of 1 or -1 means that the protein is twice as abundant in the indicated chromatophore color as compared to the other.