Package ‘Biostrings’ September 28, 2021 Title Efficient manipulation of biological strings Description Memory efficient string containers, string matching algorithms, and other utilities, for fast manipulation of large biological sequences or sets of sequences. biocViews SequenceMatching, Alignment, Sequencing, Genetics, DataImport, DataRepresentation, Infrastructure URL https://bioconductor.org/packages/Biostrings BugReports https://github.com/Bioconductor/Biostrings/issues Version 2.60.2 License Artistic-2.0 Encoding UTF-8 Author H. Pagès, P. Aboyoun, R. Gentleman, and S. DebRoy Maintainer H. Pagès <
[email protected]> Depends R (>= 4.0.0), methods, BiocGenerics (>= 0.37.0), S4Vectors (>= 0.27.12), IRanges (>= 2.23.9), XVector (>= 0.29.2), GenomeInfoDb Imports methods, utils, grDevices, graphics, stats, crayon, LinkingTo S4Vectors, IRanges, XVector Enhances Rmpi Suggests BSgenome (>= 1.13.14), BSgenome.Celegans.UCSC.ce2 (>= 1.3.11), BSgenome.Dmelanogaster.UCSC.dm3 (>= 1.3.11), BSgenome.Hsapiens.UCSC.hg18, drosophila2probe, hgu95av2probe, hgu133aprobe, GenomicFeatures (>= 1.3.14), hgu95av2cdf, affy (>= 1.41.3), affydata (>= 1.11.5), RUnit LazyLoad yes Collate 00datacache.R utils.R IUPAC_CODE_MAP.R AMINO_ACID_CODE.R GENETIC_CODE.R XStringCodec-class.R seqtype.R coloring.R XString-class.R XStringSet-class.R XStringSet-comparison.R XStringViews-class.R MaskedXString-class.R XStringSetList-class.R xscat.R XStringSet-io.R letter.R 1 2 R topics documented: getSeq.R seqinfo.R letterFrequency.R dinucleotideFrequencyTest.R chartr.R reverseComplement.R