31, 5' CYCLOPHOSPHATE* Esterase.8 in Skeletal
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Role and Significance of Sucrose-6-Phosphate Phosphatase in Regulating Sucrose Biosynthesis and Carbon Partitioning in Photosynthetic and Non-Photosynthetic Tissues
Role and significance of sucrose-6-phosphate phosphatase in regulating sucrose biosynthesis and carbon partitioning in photosynthetic and non-photosynthetic tissues Dissertation zur Erlangung des akademischen Grades Doktor der Naturwissenschaften -Dr. rer. nat.- vorgelegt der Mathematisch-Naturwissenschaftlich-Technischen Fakultät (mathematisch-naturwissenschaftlicher Bereich) der Martin-Luther-Universität Halle-Wittenberg von Herrn Shuai Chen geb. am 29. 08. 1975 in Shandong, Volksrepublik China 1. Gutachter: Prof. Dr. Uwe Sonnewald 2. Gutachter: Prof. Dr. Klaus Humbeck Halle (Saale), den 29. August 2005 urn:nbn:de:gbv:3-000008943 [http://nbn-resolving.de/urn/resolver.pl?urn=nbn%3Ade%3Agbv%3A3-000008943] Contents Contents 1 Introduction 1 1.1 Sink and source concept 1 1.2 Carbon partitioning between starch- and sucrose-synthesis in source leaves 2 1.3 Sucrose synthesis in source leaves 4 1.4 Phloem loading and long-distance transport of sucrose 6 1.5 Sucrose unloading and metabolism in sink organs 7 1.6 Sink regulation of photosynthesis and sugar signalling 10 1.7 Reversed genetics approaches for the identification of metabolic control steps 13 1.8 Chemical-inducible expression of transgenes to study plant metabolism 15 1.9 Scientific aims of this work 17 2 Materials and methods 18 2.1 Chemicals, enzymes and other consumables 18 2.2 Plant materials and growth conditions 18 2.2.1 Nicotiana tabacum 18 2.2.2 Solanum tuberosum 18 2.3 DNA cloning procedures 19 2.4 Oligonucleotides and DNA Sequencing 19 2.5 E. coli strains and plasmids 19 -
Magnesium Plays a Salient Role in the Cells
341 Journal of Clinical and Biomedical Sciences Journal homepage: www.jcbsonline.ac.in Review Article Magnesium Plays a Salient Role in the Cells R Deepti1*, G Nalini2 Department of Biochemistry, Sri Muthukumaran Medical college Hospital and Research Institute, Chennai, Tamilnadu, India. Department of Biochemistry, Sri Ramachandra Medical college and Research Institute, Chennai, Tamilnadu, India. Received: 17th October-2014 Accepted: 11th December-2014 Published: 31st –December 2014. Abstract Magnesium is an important macromineral. Major amount of magnesium is present in the bones. Magnesium ab- sorption takes place at the small intestine and magnesium levels are maintained by the kidneys. Magnesium is a fundamen- tal mineral in the mammalian cells. Magnesium acts as a co-factor for many enzymes, especially enzymes involved in carbo- hydrate and lipid metabolism. Magnesium is necessary for muscle contraction by acting as a calcium antagonist, cellular proliferation, apoptosis, immune response, etc. Now a days hypomagnesemia is very commonly seen condition associated with predominant diseases like diabetes, hypertension, cardiovascular diseases, obesity, etc. Several authors have reported that low serum magnesium levels, insulin resistance and hyperlipidemia are interrelated. Hypomagnesemia may play an causative role in the development of diabetes, oxidative stress, thrombosis, atherosclerosis, etc. Hence magnesium impor- tances should be highlighted in the research field. Keywords: hypomagnesemia, hyperlipidemia and atherosclerosis. Introduction Magnesium Homeostasis Magnesium is the fourth most abundant cation and Recommended daily allowance (RDA) for magne- the second most abundant intracellular cation next to potas- sium is 400 mg for men and 300 mg for female. Major sium in the human body.(1,2) sources for magnesium are cereals, beans, leafy vegetables and fish. -
The Action of the Phosphatases of Human Brain on Lipid Phosphate Esters by K
J Neurol Neurosurg Psychiatry: first published as 10.1136/jnnp.19.1.12 on 1 February 1956. Downloaded from J. Neurol. Neurosurg. Psychiat., 1956, 19, 12 THE ACTION OF THE PHOSPHATASES OF HUMAN BRAIN ON LIPID PHOSPHATE ESTERS BY K. P. STRICKLAND*, R. H. S. THOMPSON, and G. R. WEBSTER From the Department of Chemical Pathology, Guy's Hospital Medical School, London, Much work, using both histochemical and therefore to study the action of the phosphatases in standard biochemical techniques, has been carried human brain on the " lipid phosphate esters out on the phosphatases of peripheral nerve. It is i.e., on the various monophosphate esters that occur known that this tissue contains both alkaline in the sphingomyelins, cephalins, and lecithins. In (Landow, Kabat, and Newman, 1942) and acid addition to ox- and 3-glycerophosphate we have phosphatases (Wolf, Kabat, and Newman, 1943), therefore used phosphoryl choline, phosphoryl and the changes in the levels of these enzymes in ethanolamine, phosphoryl serine, and inositol nerves undergoing Wallerian degeneration following monophosphate as substrates for the phospho- transection have been studied by several groups of monoesterases, and have measured their rates guest. Protected by copyright. of investigators (see Hollinger, Rossiter, and Upmalis, hydrolysis by brain preparations over the pH range 1952). 4*5 to 100. Phosphatase activity in brain was first demon- Plimmer and Burch (1937) had earlier reported strated by Kay (1928), and in 1934 Edlbacher, that phosphoryl choline and phosphoryl ethanol- Goldschmidt, and Schiiippi, using ox brain, showed amine are hydrolysed by the phosphatases of bone, that both acid and alkaline phosphatases are kidney, and intestine, but thepH at which the hydro- present in this tissue. -
Exploring Metagenomic Enzymes: a Novel Esterase Useful for Short-Chain Ester Synthesis
catalysts Article Exploring Metagenomic Enzymes: A Novel Esterase Useful for Short-Chain Ester Synthesis 1,2, 1,2, 1 Thaís Carvalho Maester y , Mariana Rangel Pereira z, Aliandra M. Gibertoni Malaman , Janaina Pires Borges 3,Pâmela Aparecida Maldaner Pereira 1 and Eliana G. M. Lemos 1,* 1 Department of Technology, São Paulo State University (UNESP), Jaboticabal, SP 14884-900, Brazil; [email protected] (T.C.M.); [email protected] (M.R.P.); [email protected] (A.M.G.M.); [email protected] (P.A.M.P.) 2 Institute of Biomedical Sciences (ICB III), University of São Paulo (USP), São Paulo, SP 05508-900, Brazil 3 Institute of Biosciences, Languages and Exact Sciences, Department of Chemistry and Environmental Sciences, São Paulo State University (UNESP), São José do Rio Preto, SP 15054-000, Brazil; [email protected] * Correspondence: [email protected]; Tel.: +55-16-3209-7409 Current address: Supera Innovation and Technology Park, Ecobiotech Company, Ribeirão Preto, y SP 14056-680, Brazil. Current address: Department of Biochemistry, University of Cambridge, Cambridge CB2 1TN, UK. z Received: 13 August 2020; Accepted: 24 August 2020; Published: 23 September 2020 Abstract: Enzyme-mediated esterification reactions can be a promising alternative to produce esters of commercial interest, replacing conventional chemical processes. The aim of this work was to verify the potential of an esterase for ester synthesis. For that, recombinant lipolytic enzyme EST5 was purified and presented higher activity at pH 7.5, 45 ◦C, with a Tm of 47 ◦C. Also, the enzyme remained at least 50% active at low temperatures and exhibited broad substrate specificity toward p-nitrophenol esters 1 1 with highest activity for p-nitrophenyl valerate with a Kcat/Km of 1533 s− mM− . -
Acetic Acid (Activator-3) Is a Potent Activator of AMPK
www.nature.com/scientificreports OPEN 2-[2-(4-(trifuoromethyl) phenylamino)thiazol-4-yl]acetic acid (Activator-3) is a potent Received: 29 June 2017 Accepted: 6 June 2018 activator of AMPK Published: xx xx xxxx Navneet Bung1, Sobhitha Surepalli2, Sriram Seshadri3, Sweta Patel3, Saranya Peddasomayajula2, Lalith Kumar Kummari 2,5,6, Sireesh T. Kumar4, Phanithi Prakash Babu4, Kishore V. L. Parsa2, Rajamohan Reddy Poondra2, Gopalakrishnan Bulusu1,2 & Parimal Misra2 AMPK is considered as a potential high value target for metabolic disorders. Here, we present the molecular modeling, in vitro and in vivo characterization of Activator-3, 2-[2-(4-(trifuoromethyl) phenylamino)thiazol-4-yl]acetic acid, an AMP mimetic and a potent pan-AMPK activator. Activator-3 and AMP likely share common activation mode for AMPK activation. Activator-3 enhanced AMPK phosphorylation by upstream kinase LKB1 and protected AMPK complex against dephosphorylation by PP2C. Molecular modeling analyses followed by in vitro mutant AMPK enzyme assays demonstrate that Activator-3 interacts with R70 and R152 of the CBS1 domain on AMPK γ subunit near AMP binding site. Activator-3 and C2, a recently described AMPK mimetic, bind diferently in the γ subunit of AMPK. Activator-3 unlike C2 does not show cooperativity of AMPK activity in the presence of physiological concentration of ATP (2 mM). Activator-3 displays good pharmacokinetic profle in rat blood plasma with minimal brain penetration property. Oral treatment of High Sucrose Diet (HSD) fed diabetic rats with 10 mg/kg dose of Activator-3 once in a day for 30 days signifcantly enhanced glucose utilization, improved lipid profles and reduced body weight, demonstrating that Activator-3 is a potent AMPK activator that can alleviate the negative metabolic impact of high sucrose diet in rat model. -
Inhibitors of Pyruvate Carboxylase Tonya N
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by epublications@Marquette Marquette University e-Publications@Marquette Biological Sciences Faculty Research and Biological Sciences, Department of Publications 1-1-2010 Inhibitors of Pyruvate Carboxylase Tonya N. Zeczycki University of Wisconsin - Madison Martin St. Maurice Marquette University, [email protected] Paul V. Attwood University of Western Australia Published version. The Open Enzyme Inhibition Journal, Vol. 3 (2010): 8-26. DOI. © 2010 Bentham Open. Used with permission. This is an open access article licensed under the terms of the Creative Commons Attribution Non- Commercial License (http://creativecommons.org/licenses/by-nc/3.0/) 8 The Open Enzyme Inhibition Journal, 2010, 3, 8-26 Open Access Inhibitors of Pyruvate Carboxylase Tonya N. Zeczycki1, Martin St. Maurice2 and Paul V. Attwood3,* 1Department of Biochemistry, University of Wisconsin, Madison, WI 53726, USA 2Department of Biological Sciences, Marquette University, P.O. Box 1881, Milwaukee, WI 53201-1881, USA 3School of Biomedical, Biomolecular and Chemical Sciences, University of Western Australia, Crawley, WA6009, Australia Abstract: This review aims to discuss the varied types of inhibitors of biotin-dependent carboxylases, with an emphasis on the inhibitors of pyruvate carboxylase. Some of these inhibitors are physiologically relevant, in that they provide ways of regulating the cellular activities of the enzymes e.g. aspartate and prohibitin inhibition of pyruvate carboxylase. Most of the inhibitors that will be discussed have been used to probe various aspects of the structure and function of these enzymes. They target particular parts of the structure e.g. avidin – biotin, FTP – ATP binding site, oxamate – pyruvate binding site, phosphonoacetate – binding site of the putative carboxyphosphate intermediate. -
Download Author Version (PDF)
MedChemComm Accepted Manuscript This is an Accepted Manuscript, which has been through the Royal Society of Chemistry peer review process and has been accepted for publication. Accepted Manuscripts are published online shortly after acceptance, before technical editing, formatting and proof reading. Using this free service, authors can make their results available to the community, in citable form, before we publish the edited article. We will replace this Accepted Manuscript with the edited and formatted Advance Article as soon as it is available. You can find more information about Accepted Manuscripts in the Information for Authors. Please note that technical editing may introduce minor changes to the text and/or graphics, which may alter content. The journal’s standard Terms & Conditions and the Ethical guidelines still apply. In no event shall the Royal Society of Chemistry be held responsible for any errors or omissions in this Accepted Manuscript or any consequences arising from the use of any information it contains. www.rsc.org/medchemcomm Page 1 of 6 Journal Name Medicinal Chemistry Communications Dynamic Article Links ► Cite this: DOI: 10.1039/c0xx00000x www.rsc.org/xxxxxx ARTICLE TYPE Optimizing Glucokinase Activator Binding Kinetics to Lower in vivo Hypoglycemia Risk Manuscript Kris A. Borzilleri ‡ Jeffrey A. Pfefferkorn ╢, Angel Guzman-Perez ¥, Shenping Liu ‡, Xiayang Qiu ‡, Boris A. Chrunyk ‡, Xi Song ‡ Meihua Tu ╢, Kevin J. Filipski ╢, Robert Aiello ±, David R. Derksen ‡, Francis J. ‡ † ± ┴ ┼ ± 5 Bourbonais , James Landro , Patricia Bourassa , Theresa D’Aquila , Levenia Baker , Nicole Barrucci , John Litchfield ‡, Karen Atkinson ‡ Timothy P. Rolph ╢ and Jane M. Withka ‡* Received (in XXX, XXX) Xth XXXXXXXXX 200X, Accepted Xth XXXXXXXXX 200X DOI: 10.1039/b000000x Accepted Activation of glucokinase represents a promising strategy for the treatment of type 2 diabetes; however, 10 drug candidates have failed in clinical trials due to narrow therapeutic index between glucose-lowering efficacy and hypoglycemia. -
Association of Variation in the Sugarcane Transcriptome with Sugar Content Prathima P
Thirugnanasambandam et al. BMC Genomics (2017) 18:909 DOI 10.1186/s12864-017-4302-5 RESEARCH ARTICLE Open Access Association of variation in the sugarcane transcriptome with sugar content Prathima P. Thirugnanasambandam1,2†, Nam V. Hoang1,3†, Agnelo Furtado1, Frederick C. Botha4 and Robert J. Henry1,5* Abstract Background: Sugarcane is a major crop of the tropics cultivated mainly for its high sucrose content. The crop is genetically less explored due to its complex polyploid genome. Sucrose synthesis and accumulation are complex processes influenced by physiological, biochemical and genetic factors, and the growth environment. The recent focus on the crop for fibre and biofuel has led to a renewed interest on understanding the molecular basis of sucrose and biomass traits. This transcriptome study aimed to identify genes that are associated with and differentially regulated during sucrose synthesis and accumulation in the mature stage of sugarcane. Patterns of gene expression in high and low sugar genotypes as well as mature and immature culm tissues were studied using RNA-Seq of culm transcriptomes. Results: In this study, 28 RNA-Seq libraries from 14 genotypes of sugarcane differing in their sucrose content were used for studying the transcriptional basis of sucrose accumulation. Differential gene expression studies were performed using SoGI (Saccharum officinarum Gene Index, 3.0), SAS (sugarcane assembled sequences) of sugarcane EST database (SUCEST) and SUGIT, a sugarcane Iso-Seq transcriptome database. In total, about 34,476 genes were found to be differentially expressed between high and low sugar genotypes with the SoGI database, 20,487 genes with the SAS database and 18,543 genes with the SUGIT database at FDR < 0.01, using the Baggerley’s test. -
Inhibitors of Pyruvate Carboxylase Tonya N
Marquette University e-Publications@Marquette Biological Sciences Faculty Research and Biological Sciences, Department of Publications 1-1-2010 Inhibitors of Pyruvate Carboxylase Tonya N. Zeczycki University of Wisconsin - Madison Martin St. Maurice Marquette University, [email protected] Paul V. Attwood University of Western Australia Published version. The Open Enzyme Inhibition Journal, Vol. 3 (2010): 8-26. DOI. © 2010 Bentham Open. Used with permission. This is an open access article licensed under the terms of the Creative Commons Attribution Non- Commercial License (http://creativecommons.org/licenses/by-nc/3.0/) 8 The Open Enzyme Inhibition Journal, 2010, 3, 8-26 Open Access Inhibitors of Pyruvate Carboxylase Tonya N. Zeczycki1, Martin St. Maurice2 and Paul V. Attwood3,* 1Department of Biochemistry, University of Wisconsin, Madison, WI 53726, USA 2Department of Biological Sciences, Marquette University, P.O. Box 1881, Milwaukee, WI 53201-1881, USA 3School of Biomedical, Biomolecular and Chemical Sciences, University of Western Australia, Crawley, WA6009, Australia Abstract: This review aims to discuss the varied types of inhibitors of biotin-dependent carboxylases, with an emphasis on the inhibitors of pyruvate carboxylase. Some of these inhibitors are physiologically relevant, in that they provide ways of regulating the cellular activities of the enzymes e.g. aspartate and prohibitin inhibition of pyruvate carboxylase. Most of the inhibitors that will be discussed have been used to probe various aspects of the structure and function of these enzymes. They target particular parts of the structure e.g. avidin – biotin, FTP – ATP binding site, oxamate – pyruvate binding site, phosphonoacetate – binding site of the putative carboxyphosphate intermediate. Keywords: Pyruvate carboxylase, biotin-dependent enzyme, avidin, biotin, nucleotide inhibitors, acetyl coenzyme A, allosteric inhibitors, chlorothricin. -
Changes in Phosphatidylinositol Metabolism in Response to Hyperosmotic Stress in Daucus Carota 1. Cells Grown in Suspension Culture'
Plant Physiol. (1993) 103: 637-647 Changes in Phosphatidylinositol Metabolism in Response to Hyperosmotic Stress in Daucus carota 1. Cells Grown in Suspension Culture' Myeon H. Cho, Stephen B. Shears, and Wendy F. BOSS* Department of Botany, North Carolina State University, Raleigh, North Carolina 27695-761 2 (M.H.C., W.F.B.); and Laboratory of Cellular and Molecular Pharmacology, National lnstitute of Environmental Health Sciences, Research Triangle Park, North Carolina 27709 (S.B.S) in the Samanea saman pulvini is there evidence for stimulus- Carrot (Daucus carota L.) cells plasmolyzed within 30 s after mediated turnover of polyphosphorylated inositol phospho- adding sorbitol to increase the osmotic strength of the medium lipids and inositol phosphates within the rapid time scale from 0.2 to 0.4 or 0.6 osmolal. However, there was no significant seen in animal cells (Morse et al., 1987). Although results change in the polyphosphorylated inositol phospholipids or inositol from in vitro studies and from IP3 microinjection in vivo have phosphates or in inositol phospholipid metabolism within 30 s of shown that Ir3 can release Ca2+from internal stores such as imposing the hyperosmotic stress. Maximum changes in phospha- vacuoles and tonoplast vesicles (Drcibak and Ferguson, 1985; tidylinositol 4-monophosphate (PIP) metabolism were detected at 5 min, at which time the cells appeared to adjust to the change in Schumaker and Sze, 1987; Ranjeva et al., 1988; Gilroy et al., osmoticum. There was a 30% decrease in [3H]inositol-labeledPIP. 1990), the complete pathway from a stimulus to Ca2+release The specific activity of enzymes involved in the metabolism of the has yet to be demonstrated in higher plants. -
GTP Activator and Dntp Substrates of HIV-1 Restriction Factor SAMHD1
GTP activator and dNTP substrates of HIV-1 restriction PNAS PLUS factor SAMHD1 generate a long-lived activated state Erik C. Hansen, Kyle J. Seamon, Shannen L. Cravens, and James T. Stivers1 Department of Pharmacology and Molecular Sciences, The Johns Hopkins University School of Medicine, Baltimore, MD 21205-2185 Edited by Myron F. Goodman, University of Southern California, Los Angeles, CA, and accepted by the Editorial Board March 26, 2014 (received for review January 27, 2014) The HIV-1 restriction factor sterile α-motif/histidine-aspartate phatases (14). Presumably, degradation to the level of nucleoside domain-containing protein 1 (SAMHD1) is a tetrameric protein that rather than deoxynucleoside diphosphate (dNDP) or deoxy- catalyzes the hydrolysis of all dNTPs to the deoxynucleoside and nucleoside monophosphate (dNMP) is to make the process tripolyphosphate, which effectively depletes the dNTP substrates energetically or kinetically costly to reverse, with the additional of HIV reverse transcriptase. Here, we establish that SAMHD1 is possibility that the neutral nucleoside will be irreversibly trans- activated by GTP binding to guanine-specific activator sites (A1) as ported out of the cell (9). The unusual triphosphohydrolase activity well as coactivation by substrate dNTP binding to a distinct set of of SAMHD1 in quiescent immune cells has received significant nonspecific activator sites (A2). Combined activation by GTP and attention, because HIV-1 and HSV-1 are severely restricted in their dNTPs results in a long-lived tetrameric form of SAMHD1 that ability to infect quiescent cells that have severely depressed dNTP persists for hours, even after activating nucleotides are withdrawn pools, which has been directly linked to SAMHD1 enzymatic ac- from the solution. -
Some Ultrastructural and Enzymatic Effects of Water Stress in Cotton (Gossypium Hirsutum L.) Leaves (Acid Phosphatase/Acid Lipase/Alkaline Lipase)
Proc. Nat. Acad. Sci. USA Vol. 71, No. 8, pp. 3243-3247, August 1974 Some Ultrastructural and Enzymatic Effects of Water Stress in Cotton (Gossypium hirsutum L.) Leaves (acid phosphatase/acid lipase/alkaline lipase) JORGE VIEIRA DA SILVA*, AUBREY W. NAYLOR, AND PAUL J. KRAMER Department of Botany, Duke University, Durham, North Carolina 27706 Contributed by Paul J. Kramer, May 30, 1974 ABSTRACT Water stress induced by floating discs cut boxylation of glycine occurs after lipase treatment of mito- from cotton leaves (Gossypium hirsutum L. cultivar chondria Stoneville) on a polyethylene glycol solution (water poten- (23). tial, -10 bars) was associated with marked alteration of Results, thus far obtained by indirect means, support the ultrastructural organization of both chloroplasts and hypothesis that water stress in drought sensitive species leads mitochondria. Ultrastructural organization of chloro- to hydrolytic activity that degrades not only storage products plasts was sometimes almost completely destroyed; per- but the structural framework of organelles such as ribosomes, oxisomes seemed not to be affected; and chloroplast ribosomes disappeared. Also accompanying water stress chloroplasts, and mitochondria. Ultrastructural and micro- was a sharp increase in activity of acid phosphatase chemical evidence is reported here that such deterioration [orthoplhosphoric-monoester phosplhohydrolase (acid opti- occurs in cotton (Gossypium hirsutum L. cv. Stoneville) during mum), EC 3.1.3.2], and acid and alkaline lipase [glycerol water stress. ester hydrolase EC 3.1.1.3] within chloroplasts. Only acid lipase activity was detected inside mitochondria of stressed MATERIALS AND METHODS discs. These alterations in cell organization and enzy- mology may account for at least part of the previously Cotton plants (Gossypium hirsutum L.