Delaware Marine Biotoxin Plan 2014
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Molecular Data and the Evolutionary History of Dinoflagellates by Juan Fernando Saldarriaga Echavarria Diplom, Ruprecht-Karls-Un
Molecular data and the evolutionary history of dinoflagellates by Juan Fernando Saldarriaga Echavarria Diplom, Ruprecht-Karls-Universitat Heidelberg, 1993 A THESIS SUBMITTED IN PARTIAL FULFILMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY in THE FACULTY OF GRADUATE STUDIES Department of Botany We accept this thesis as conforming to the required standard THE UNIVERSITY OF BRITISH COLUMBIA November 2003 © Juan Fernando Saldarriaga Echavarria, 2003 ABSTRACT New sequences of ribosomal and protein genes were combined with available morphological and paleontological data to produce a phylogenetic framework for dinoflagellates. The evolutionary history of some of the major morphological features of the group was then investigated in the light of that framework. Phylogenetic trees of dinoflagellates based on the small subunit ribosomal RNA gene (SSU) are generally poorly resolved but include many well- supported clades, and while combined analyses of SSU and LSU (large subunit ribosomal RNA) improve the support for several nodes, they are still generally unsatisfactory. Protein-gene based trees lack the degree of species representation necessary for meaningful in-group phylogenetic analyses, but do provide important insights to the phylogenetic position of dinoflagellates as a whole and on the identity of their close relatives. Molecular data agree with paleontology in suggesting an early evolutionary radiation of the group, but whereas paleontological data include only taxa with fossilizable cysts, the new data examined here establish that this radiation event included all dinokaryotic lineages, including athecate forms. Plastids were lost and replaced many times in dinoflagellates, a situation entirely unique for this group. Histones could well have been lost earlier in the lineage than previously assumed. -
Transcriptome Analysis Reveals Nuclear-Encoded Proteins for The
Wisecaver and Hackett BMC Genomics 2010, 11:366 http://www.biomedcentral.com/1471-2164/11/366 RESEARCH ARTICLE Open Access TranscriptomeResearch article analysis reveals nuclear-encoded proteins for the maintenance of temporary plastids in the dinoflagellate Dinophysis acuminata Jennifer H Wisecaver and Jeremiah D Hackett* Abstract Background: Dinophysis is exceptional among dinoflagellates, possessing plastids derived from cryptophyte algae. Although Dinophysis can be maintained in pure culture for several months, the genus is mixotrophic and needs to feed either to acquire plastids (a process known as kleptoplastidy) or obtain growth factors necessary for plastid maintenance. Dinophysis does not feed directly on cryptophyte algae, but rather on a ciliate (Myrionecta rubra) that has consumed the cryptophytes and retained their plastids. Despite the apparent absence of cryptophyte nuclear genes required for plastid function, Dinophysis can retain cryptophyte plastids for months without feeding. Results: To determine if this dinoflagellate has nuclear-encoded genes for plastid function, we sequenced cDNA from Dinophysis acuminata, its ciliate prey M. rubra, and the cryptophyte source of the plastid Geminigera cryophila. We identified five proteins complete with plastid-targeting peptides encoded in the nuclear genome of D. acuminata that function in photosystem stabilization and metabolite transport. Phylogenetic analyses show that the genes are derived from multiple algal sources indicating some were acquired through horizontal gene transfer. Conclusions: These findings suggest that D. acuminata has some functional control of its plastid, and may be able to extend the useful life of the plastid by replacing damaged transporters and protecting components of the photosystem from stress. However, the dearth of plastid-related genes compared to other fully phototrophic algae suggests that D. -
Dinoflagelados (Dinophyta) De Los Órdenes Prorocentrales Y Dinophysiales Del Sistema Arrecifal Veracruzano, México
Symbol.dfont in 8/10 pts abcdefghijklmopqrstuvwxyz ABCDEFGHIJKLMNOPQRSTUVWXYZ Symbol.dfont in 10/12 pts abcdefghijklmopqrstuvwxyz ABCDEFGHIJKLMNOPQRSTUVWXYZ Symbol.dfont in 12/14 pts abcdefghijklmopqrstuvwxyz ABCDEFGHIJKLMNOPQRSTUVWXYZ Dinoflagelados (Dinophyta) de los órdenes Prorocentrales y Dinophysiales del Sistema Arrecifal Veracruzano, México Dulce Parra-Toriz1,3, María de Lourdes Araceli Ramírez-Rodríguez1 & David Uriel Hernández-Becerril2 1. Facultad de Biología, Universidad Veracruzana, Circuito Gonzalo Beltrán s/n, Zona Universitaria, Xalapa, Veracruz, 91090 México; [email protected] 2. Instituto de Ciencias del Mar y Limnología, Universidad Nacional Autónoma de México (UNAM). Apartado Postal 70-305, México D.F. 04510 México; [email protected] 3. Posgrado en Ciencias del Mar. Instituto de Ciencias del Mar y Limnología, Universidad Nacional Autónoma de México (UNAM). Apartado Postal 70-305, México D.F. 04510 México; [email protected] Recibido 12-III-2010. Corregido 24-VIII-2010. Aceptado 23-IX-2010. Abstract: Dinoflagellates (Dinophyta) of orders Dinophysiales and Prorocentrales of the Veracruz Reef System, Mexico. Dinoflagellates are a major taxonomic group in marine phytoplankton communities in terms of diversity and biomass. Some species are also important because they form blooms and/or produce toxins that may cause diverse problems. The composition of planktonic dinoflagellates of the orders Prorocentrales and Dinophysiales, in the Veracruz Reef System, were obtained during the period of October 2006 to January 2007. For this, samples were taken from the surface at 10 stations with net of 30µm mesh, and were analyzed by light and scanning electron microscopy. Each species was described and illustrated, measured and their dis- tribution and ecological data is also given. A total of nine species were found and identified, belonging to four genera: Dinophysis was represented by three species; Prorocentrum by three, Phalacroma by two, and only one species of Ornithocercus was detected. -
Dinophysis - a Planktonic Dinoflagellate Genus Which Can Act Both As a Prey and a Predator of a Ciliate
MARINE ECOLOGY PROGRESS SERIES Vol. 69: 201-204.1991 Published January 10 Mar. Ecol. Prog. Ser. NOTE Dinophysis - a planktonic dinoflagellate genus which can act both as a prey and a predator of a ciliate Per Juel Hansen Marine Biological Laboratory. University of Copenhagen. Strandpromenaden 5, DK-3000 Helsinger, Denmark ABSTRACT: Heterotrophic members of the marine plankton (Nunclon, Denmark) at low light (50 pE m-2 S-') on a dinoflagellate genus Dinophysis are specialized predators, rotating wheel at 18 + 1 "C. The feeding behaviour of whose food includes the prostomatid ciliate Tiarina fusus. This heterotrophic (colourless) Dinophysis and the nature of ciliate differs from most planktonic ciliates in its ability to ingest prey of its own size including autotrophic Dinophysis food items were studied microscopically. For enumera- spp. However, when trying to catch a heterotrophic Dinophy- tion of plankton, Lugol-fixed water samples (at least sis sp., the ciliate is trapped instead by the dinoflagellate and 50 ml) were allowed to settle, and counted using an emptied via a feeding tube (peduncle),which originates from inverted microscope. For transmission electron micros- the flagellar pore of the dinoflagellate. The specific predation on a ciliate by a heterotrophic dinoflagellate represents a new copy, cells were fixed in a 0.1 M phosphate buffer (pH trophic link in the marine planktonic food web. 7.5) with l % Os04, 3 % glutaraldehyde and l mM sucrose. The fixed cells were stained in a saturated The existence of colourl.ess thecate dinoflagellates in solution of uranyl acetate in 70 % ethanol for 1 h, the marine pelagial has been recognized among taxo- dehydrated and imbedded in Epon. -
Development of Molecular Probes for Dinophysis (Dinophyceae) Plastid: a Tool to Predict Blooming and Explore Plastid Origin
Development of Molecular Probes for Dinophysis (Dinophyceae) Plastid: A Tool to Predict Blooming and Explore Plastid Origin Yoshiaki Takahashi,1 Kiyotaka Takishita,2 Kazuhiko Koike,1 Tadashi Maruyama,2 Takeshi Nakayama,3 Atsushi Kobiyama,1 Takehiko Ogata1 1School of Fisheries Sciences, Kitasato University, Sanriku, Ofunato, Iwate, 022-01011, Japan 2Marine Biotechnology Institute, Heita Kamaishi, Iwate, 026-0001, Japan 3Institute of Biological Sciences, University of Tsukuba, Tennoh-dai, Tsukuba, Ibaraki, 305-8577, Japan Received: 9 July 2004 / Accepted: 19 August 2004 / Online publication: 24 March 2005 Abstract Introduction Dinophysis are species of dinoflagellates that cause Some phytoplankton species are known to produce diarrhetic shellfish poisoning. We have previously toxins that accumulate in plankton feeders. In par- reported that they probably acquire plastids from ticular, toxin accumulation in bivalves causes food cryptophytes in the environment, after which they poisoning in humans, and often leads to severe eco- bloom. Thus monitoring the intracellular plastid nomic damage to the shellfish industry. density in Dinophysis and the source cryptophytes Diarrhetic shellfish poisoning (DSP) is a gastro- occurring in the field should allow prediction of intestinal syndrome caused by phytoplankton tox- Dinophysis blooming. In this study the nucleotide ins, including okadaic acid, and several analogues of sequences of the plastid-encoded small subunit dinophysistoxin (Yasumoto et al., 1985). These tox- ribosomal RNA gene and rbcL (encoding the large ins are derived from several species of dinoflagellates subunit of RuBisCO) from Dinophysis spp. were belonging to the genus Dinophysis (Yasumoto et al, compared with those of cryptophytes, and genetic 1980; Lee et al., 1989). Despite extensive studies in probes specific for the Dinophysis plastid were de- the last 2 decades, little is known about the eco- signed. -
The Symbiotic Life of Symbiodinium in the Open Ocean Within a New Species of Calcifying Ciliate (Tiarina Sp.)
The ISME Journal (2016) 10, 1424–1436 © 2016 International Society for Microbial Ecology All rights reserved 1751-7362/16 www.nature.com/ismej ORIGINAL ARTICLE The symbiotic life of Symbiodinium in the open ocean within a new species of calcifying ciliate (Tiarina sp.) Solenn Mordret1,2,5, Sarah Romac1,2, Nicolas Henry1,2, Sébastien Colin1,2, Margaux Carmichael1,2, Cédric Berney1,2, Stéphane Audic1,2, Daniel J Richter1,2, Xavier Pochon3,4, Colomban de Vargas1,2 and Johan Decelle1,2,6 1EPEP—Evolution des Protistes et des Ecosystèmes Pélagiques—team, Sorbonne Universités, UPMC Univ Paris 06, UMR 7144, Station Biologique de Roscoff, Roscoff, France; 2CNRS, UMR 7144, Station Biologique de Roscoff, Roscoff, France; 3Coastal and Freshwater Group, Cawthron Institute, Nelson, New Zealand and 4Institute of Marine Science, University of Auckland, Auckland, New Zealand Symbiotic partnerships between heterotrophic hosts and intracellular microalgae are common in tropical and subtropical oligotrophic waters of benthic and pelagic marine habitats. The iconic example is the photosynthetic dinoflagellate genus Symbiodinium that establishes mutualistic symbioses with a wide diversity of benthic hosts, sustaining highly biodiverse reef ecosystems worldwide. Paradoxically, although various species of photosynthetic dinoflagellates are prevalent eukaryotic symbionts in pelagic waters, Symbiodinium has not yet been reported in symbiosis within oceanic plankton, despite its high propensity for the symbiotic lifestyle. Here we report a new pelagic photosymbiosis between a calcifying ciliate host and the microalga Symbiodinium in surface ocean waters. Confocal and scanning electron microscopy, together with an 18S rDNA-based phylogeny, showed that the host is a new ciliate species closely related to Tiarina fusus (Colepidae). -
(Alveolata) As Inferred from Hsp90 and Actin Phylogenies1
J. Phycol. 40, 341–350 (2004) r 2004 Phycological Society of America DOI: 10.1111/j.1529-8817.2004.03129.x EARLY EVOLUTIONARY HISTORY OF DINOFLAGELLATES AND APICOMPLEXANS (ALVEOLATA) AS INFERRED FROM HSP90 AND ACTIN PHYLOGENIES1 Brian S. Leander2 and Patrick J. Keeling Canadian Institute for Advanced Research, Program in Evolutionary Biology, Departments of Botany and Zoology, University of British Columbia, Vancouver, British Columbia, Canada Three extremely diverse groups of unicellular The Alveolata is one of the most biologically diverse eukaryotes comprise the Alveolata: ciliates, dino- supergroups of eukaryotic microorganisms, consisting flagellates, and apicomplexans. The vast phenotypic of ciliates, dinoflagellates, apicomplexans, and several distances between the three groups along with the minor lineages. Although molecular phylogenies un- enigmatic distribution of plastids and the economic equivocally support the monophyly of alveolates, and medical importance of several representative members of the group share only a few derived species (e.g. Plasmodium, Toxoplasma, Perkinsus, and morphological features, such as distinctive patterns of Pfiesteria) have stimulated a great deal of specula- cortical vesicles (syn. alveoli or amphiesmal vesicles) tion on the early evolutionary history of alveolates. subtending the plasma membrane and presumptive A robust phylogenetic framework for alveolate pinocytotic structures, called ‘‘micropores’’ (Cavalier- diversity will provide the context necessary for Smith 1993, Siddall et al. 1997, Patterson -
Metabolomic Profiles of Dinophysis Acuminata and Dinophysis Acuta
Metabolomic Profiles of Dinophysis acuminata and Dinophysis acuta Using Non- Targeted High-Resolution Mass Spectrometry Effect of Nutritional Status and Prey García-Portela, María; Reguera, Beatriz; Sibat, Manoella; Altenburger, Andreas; Rodríguez, Francisco; Hess, Philipp Published in: Marine Drugs DOI: 10.3390/md16050143 Publication date: 2018 Document version Publisher's PDF, also known as Version of record Document license: CC BY Citation for published version (APA): García-Portela, M., Reguera, B., Sibat, M., Altenburger, A., Rodríguez, F., & Hess, P. (2018). Metabolomic Profiles of Dinophysis acuminata and Dinophysis acuta Using Non-Targeted High-Resolution Mass Spectrometry: Effect of Nutritional Status and Prey. Marine Drugs, 16(5), [143]. https://doi.org/10.3390/md16050143 Download date: 24. Sep. 2021 marine drugs Article Metabolomic Profiles of Dinophysis acuminata and Dinophysis acuta Using Non-Targeted High-Resolution Mass Spectrometry: Effect of Nutritional Status and Prey María García-Portela 1,* ID , Beatriz Reguera 1 ID , Manoella Sibat 2 ID , Andreas Altenburger 3 ID , Francisco Rodríguez 1 and Philipp Hess 2 ID 1 IEO, Oceanographic Centre of Vigo, Subida a Radio Faro 50, Vigo 36390, Spain; [email protected] (B.R.); [email protected] (F.R.) 2 IFREMER, Phycotoxins Laboratory, rue de l’Ile d’Yeu, BP 21105, F-44311 Nantes, France; [email protected] (M.S.); [email protected] (P.H.) 3 Natural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5-7, 1350 Copenhagen, Denmark; [email protected] * Correspondence: [email protected]; Tel.: +34-986-462-273 Received: 14 February 2018; Accepted: 20 April 2018; Published: 26 April 2018 Abstract: Photosynthetic species of the genus Dinophysis are obligate mixotrophs with temporary plastids (kleptoplastids) that are acquired from the ciliate Mesodinium rubrum, which feeds on cryptophytes of the Teleaulax-Plagioselmis-Geminigera clade. -
The Florida Red Tide Dinoflagellate Karenia Brevis
G Model HARALG-488; No of Pages 11 Harmful Algae xxx (2009) xxx–xxx Contents lists available at ScienceDirect Harmful Algae journal homepage: www.elsevier.com/locate/hal Review The Florida red tide dinoflagellate Karenia brevis: New insights into cellular and molecular processes underlying bloom dynamics Frances M. Van Dolah a,*, Kristy B. Lidie a, Emily A. Monroe a, Debashish Bhattacharya b, Lisa Campbell c, Gregory J. Doucette a, Daniel Kamykowski d a Marine Biotoxins Program, NOAA Center for Coastal Environmental Health and Biomolecular Resarch, Charleston, SC, United States b Department of Biological Sciences and Roy J. Carver Center for Comparative Genomics, University of Iowa, Iowa City, IA, United States c Department of Oceanography, Texas A&M University, College Station, TX, United States d Department of Marine, Earth and Atmospheric Sciences, North Carolina State University, Raleigh, NC, United States ARTICLE INFO ABSTRACT Article history: The dinoflagellate Karenia brevis is responsible for nearly annual red tides in the Gulf of Mexico that Available online xxx cause extensive marine mortalities and human illness due to the production of brevetoxins. Although the mechanisms regulating its bloom dynamics and toxicity have received considerable attention, Keywords: investigation into these processes at the cellular and molecular level has only begun in earnest during Bacterial–algal interactions the past decade. This review provides an overview of the recent advances in our understanding of the Cell cycle cellular and molecular biology on K. brevis. Several molecular resources developed for K. brevis, including Dinoflagellate cDNA and genomic DNA libraries, DNA microarrays, metagenomic libraries, and probes for population Florida red tide genetics, have revolutionized our ability to investigate fundamental questions about K. -
Potentially Toxic Dinoflagellates in Mediterranean Waters (Sicily) and Related Hydrobiological Conditions
AQUATIC MICROBIAL ECOLOGY I Vol. 9: 63-68, 1995 Published April 28 Aquat microb Ecol I I Potentially toxic dinoflagellates in Mediterranean waters (Sicily) and related hydrobiological conditions 'Istituto Sperimentale Talassografico, CNR - Sp. San Raineri, 1-98122 Messina, Italy 'CEOM - Centro Oceanologico Mediterraneo, Palermo, Italy ABSTRACT: The seasonal occurrence of 3 potentially toxic dinoflagellates in different coastal environ- ments of Sicily (Mediterranean Sea) and the associated hydrobiological conditions are reported. Dino- physis sacculus and Alexandrium sp. occurred, in 1993, in shallow inland waters (a brackish lagoon of the Tyrrhenian Sea), characterized by thermo-haline homogeneity. The densities of Dinophysis were maximal in Apnl, when the waters were depleted in nutrients, the N:P ratio was 10:1 and the algal pop- ulation, including synechoccoid cyanobacteria, bloomed. Afterwards, the cell concentrations decreased and in summer there was a total replacement of Dinophysis with Alexandrium. In late summer 1993, Gymnodinium catenatum was also recorded in offshore waters of the Malta Channel, during coastal upwelling associated with thermal stratification of the waters and the cells dispersed shorewards. DSP toxicity of blue mussels was detected in April, at a low level only, in the area affected by D. sacculus. No data is, however, available to date on PSP production by Alexandrium and G. catenatum, which are new records for these areas. KEY WORDS: Dinoflagellates . Hydrobiological factors . Mediterranean Sea . Shellfish contamination INTRODUCTION tised, as well as in other areas of the Tyrrhenian coast- line, where artificial reefs and pilot plants for shellfish In recent years, various species of both naked and farming are located (Giacobbe et al. -
Chapter 6.2-Assessment of Harmful Algae Bloom
Maryland’s Coastal Bays: Ecosystem Health Assessment Chapter 6.2 Chapter 6.2 Assessment of harmful algae bloom species in the Maryland Coastal Bays Catherine Wazniak Maryland Department of Natural Resources, Tidewater Ecosystem Assessment, Annapolis, MD 21401 Abstract Thirteen potentially harmful algae taxa have been identified in the Maryland Coastal Bays: Aureococcus anophagefferens (brown tide), Pfiesteria piscicida and P. shumwayae, Chloromorum/ Chattonella spp., Heterosigma akashiwo, Fibrocapsa japonica, Prorocentrum minimum, Dinophysis spp., Amphidinium spp., Pseudo-nitzchia spp., Karlodinium micrum and two macroalgae genera (Gracilaria, Chaetomorpha). Presence of potentially toxic species is richest in the polluted tributaries of St. Martin River and Newport Bay. Approximately 5% of the phytoplankton species identified for Maryland’s Coastal Bays represent potentially harmful algal bloom (HAB) species. The HABs are recognized for their potentially toxic properties and, in some cases, their ability to produce large blooms negatively affecting light and dissolved oxygen resources. Brown tide (Aureococcus anophagefferens) has been the most widespread and prolific HAB species in the area in recent years, producing growth impacts to juvenile clams in test studies and potential impacts to sea grass distribution and growth (see Chapter 7.1). Macroalgal fluctuations may be evidence of a system balancing on the edge of a eutrophic (nutrient- enriched) state (see chapter 4). No evidence of toxic activity has been detected among the Coastal Bays phytoplankton. However, species such as Pseudo-nitzschia seriata, Prorocentrum minimum, Pfiesteria piscicida, Dinophysis acuminata and Karlodinium micrum have produced positive toxic bioassays or generated detectable toxins in Chesapeake Bay. Pfiesteria piscicida was retrospectively considered as the likely causative organism in a large historical fish kill on the Indian River, Delaware. -
Co-Occurrence of Dinophysis Tripos and Pectenotoxins in Argentinean
Harmful Algae 42 (2015) 25–33 Contents lists available at ScienceDirect Harmful Algae jo urnal homepage: www.elsevier.com/locate/hal Co-occurrence of Dinophysis tripos and pectenotoxins in Argentinean shelf waters a,b a,b a,b b,c,d Elena Fabro , Gasto´ n O. Almandoz , Martha E. Ferrario , Mo´ nica S. Hoffmeyer , e d f, Rosa E. Pettigrosso , Roma´n Uibrig , Bernd Krock * a Divisio´n Ficologı´a, Facultad de Ciencias Naturales y Museo, Universidad Nacional de La Plata, Paseo del Bosque s/n, B1900FWA La Plata, Argentina b Consejo Nacional de Investigaciones Cientı´ficas y Te´cnicas (CONICET), Av. Rivadavia 1917, 1033 Buenos Aires, Argentina c Facultad Regional de Bahı´a Blanca, Universidad Tecnolo´gica Nacional, 11 de Abril 461, B8000LMI Bahı´a Blanca, Argentina d Instituto Argentino de Oceanografı´a (CCTBB CONICET), Camino La Carrindanga km 7.5, B8000FWB Bahı´a Blanca, Argentina e Departamento de Biologı´a, Bioquı´mica y Farmacia, Universidad Nacional del Sur, San Juan 670, 8000 Bahı´a Blanca, Argentina f Alfred Wegener Institut-Helmholtz Zentrum fu¨r Polar- und Meeresforschung, Chemische O¨kologie, Am Handelshafen 12, 27570 Bremerhaven, Germany A R T I C L E I N F O A B S T R A C T Article history: The species Dinophysis tripos is a widely distributed marine dinoflagellate associated with diarrheic Received 21 August 2014 shellfish poisoning (DSP) events, which has been recently identified as a pectenotoxin (PTX) producer. In Received in revised form 18 December 2014 two sampling expeditions carried out during austral autumns 2012 and 2013 along the Argentine Sea Accepted 18 December 2014 (38–568 S), lipophilic phycotoxins were measured by tandem mass spectrometry coupled to liquid Available online chromatography (LC–MS/MS) in size-fractionated plankton samples together with microscopic analyses of potentially toxic phytoplankton.