COVID-19 Routes of Transmission – What We Know So
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Cultural Macroevolution and the Transmission of Traits
UC Davis UC Davis Previously Published Works Title Cultural macroevolution and the transmission of traits Permalink https://escholarship.org/uc/item/92n9t9q0 Journal Evolutionary Anthropology, 15(2) ISSN 1060-1538 Authors Borgerhoff Mulder, Monique Nunn, C L Towner, M. C. Publication Date 2006-03-01 Peer reviewed eScholarship.org Powered by the California Digital Library University of California Borgerhoff Mulder, Nunn and Towner 2005 1/4/2007 Page 1 of 38 CULTURAL MACROEVOLUTION AND THE TRANSMISSION OF TRAITS Monique Borgerhoff Mulder University of California Department of Anthropology Davis, CA 95616 USA email: [email protected] Charles L. Nunn University of California Department of Integrative Biology Berkeley, CA 94720-3140 USA Max Planck Institute for Evolutionary Anthropology Leipzig, Germany email: [email protected] Mary C. Towner University of California Department of Anthropology Davis, CA 95616 USA email: [email protected] Monique Borgerhoff Mulder is at the Department of Anthropology (UC Davis) and also a member of the Center for Population Biology and the Graduate Group in Ecology. Charles Nunn is a scientist at the Max Planck Institute for Evolutionary Anthropology and in the Department of Integrative Biology at UC Berkeley. Mary Towner is a post doctoral fellow in the Department of Anthropology at UC Davis Word Count: 7668 (including 4 boxes) 7 figures 100 refs Revised for Evolutionary Anthropology p. 1 Borgerhoff Mulder, Nunn and Towner 2005 1/4/2007 Page 2 of 38 Cultural traits are distributed across human societies in a patterned way. Study of the mechanisms whereby cultural traits persist and change over time is key to understanding human cultural diversity. -
Commentary Disease Transmission Dynamics and the Evolution
Proc. Natl. Acad. Sci. USA Vol. 96, pp. 800–801, February 1999 Commentary Disease transmission dynamics and the evolution of antibiotic resistance in hospitals and communal settings Simon A. Levin*† and Viggo Andreasen‡ *Department of Ecology and Evolutionary Biology, Eno Hall, Princeton University, Princeton NJ 08544; and ‡Department of Mathematics, Roskilde University, DK-4000 Roskilde, Denmark Despite the tremendous benefits of antibiotics for dealing with sally, exercising little influence on their host under normal a wide range of pathogens, there is by now little doubt that conditions. Antibiotics are typically introduced to treat the their indiscriminate use has led to the emergence of novel true pathogens, and for them the problem of resistance resistant strains and a frightening new set of threats to public introduces questions concerning the length and intensity of health. Hospitals and other community settings provide an treatment, multidrug strategies, and patient compliance. (See, especially fertile ground for the spread of those types; in for example, refs. 2–4). Commensals provide a different sort particular, the recent emergence and proliferation of bacteria of problem, however. Under normal conditions, they live in resistant to both methicillin and vancomycin has engendered such places as the skin or upper respiratory tract, causing little serious concern, threatening the effectiveness of the last or no harm. On occasion, however, they become translocated available options for treatment of potentially fatal Staphylo- to sites that are normally sterile, such as the blood or lungs, coccus strains. where they may have serious harmful effects (6). Many viru- It seems clear that a considered and comprehensive strategy lence factors, for example in Staphylococcus aureus, are carried for antibiotic use is essential, permitting the intelligent de- on plasmids, and can be exchanged among different strains. -
Valacyclovir Reduced Genital Herpes Transmission in Couples Discordant for Herpes Simplex Virus Type 2 Infection Corey L, Wald A, Patel R, Et Al
146 THERAPEUTICS Evid Based Med: first published as 10.1136/ebm.9.5.146 on 30 September 2004. Downloaded from Valacyclovir reduced genital herpes transmission in couples discordant for herpes simplex virus type 2 infection Corey L, Wald A, Patel R, et al. Once-daily valacyclovir to reduce the risk of transmission of genital herpes. N Engl J Med 2004;350:11–20. Clinical impact ratings GP/FP/Primary care wwwwwwq Infectious diseases wwwwwqq ............................................................................................................................... In heterosexual couples who are serologically discordant for herpes simplex virus type 2 (HSV-2) infection, does once Q daily valacyclovir reduce the sexual transmission of genital herpes? METHODS MAIN RESULTS The table shows the results. Design: randomised placebo controlled trial. CONCLUSION In heterosexual couples discordant for herpes simplex virus type 2 infection, valacyclovir reduced transmission of infection. Allocation: concealed.* Commentary Blinding: blinded {participants, healthcare providers, data revious studies have shown that antiviral drugs can reduce the collectors, data analysts, and outcome assessors}À.* frequency of recurrence and subclinical shedding of viral particles.1 Follow up period: 8 months. P This important, large, well designed trial by Corey et al is the first to show an effect on the transmission of HSV-2 infection to an uninfected partner. In this study, the reduction in transmission was limited; 62 partners had Setting: 96 sites in the US, Canada, Europe, Latin America, and to take the drug daily for 8 months to prevent 1 infection, and 57 partners Australia. had to take the drug daily to prevent overall acquisition of HSV-2 infection. 2 independent predictors were found in addition to the drugs: Participants: 1498 couples >18 years who were women as the susceptible partners (hazard ratio [HR] 3.3) and duration immunocompetent, heterosexual, monogamous, in good health, of HSV-2 infection ,2 years (HR 2.9). -
Detection of ESKAPE Pathogens and Clostridioides Difficile in Simulated
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.04.433847; this version posted March 4, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 1 Detection of ESKAPE pathogens and Clostridioides difficile in 2 Simulated Skin Transmission Events with Metagenomic and 3 Metatranscriptomic Sequencing 4 5 Krista L. Ternusa#, Nicolette C. Keplingera, Anthony D. Kappella, Gene D. Godboldb, Veena 6 Palsikara, Carlos A. Acevedoa, Katharina L. Webera, Danielle S. LeSassiera, Kathleen Q. 7 Schultea, Nicole M. Westfalla, and F. Curtis Hewitta 8 9 aSignature Science, LLC, 8329 North Mopac Expressway, Austin, Texas, USA 10 bSignature Science, LLC, 1670 Discovery Drive, Charlottesville, VA, USA 11 12 #Address correspondence to Krista L. Ternus, [email protected] 13 14 1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.04.433847; this version posted March 4, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 15 1 Abstract 16 Background: Antimicrobial resistance is a significant global threat, posing major public health 17 risks and economic costs to healthcare systems. Bacterial cultures are typically used to diagnose 18 healthcare-acquired infections (HAI); however, culture-dependent methods provide limited 19 presence/absence information and are not applicable to all pathogens. -
Parents with Periodontitis Impact the Subgingival Colonization of Their Ofspring Mabelle Freitas Monteiro1, Khaled Altabtbaei2, Purnima S
www.nature.com/scientificreports OPEN Parents with periodontitis impact the subgingival colonization of their ofspring Mabelle Freitas Monteiro1, Khaled Altabtbaei2, Purnima S. Kumar3,4*, Márcio Zafalon Casati1, Karina Gonzales Silverio Ruiz1, Enilson Antonio Sallum1, Francisco Humberto Nociti‑Junior1 & Renato Corrêa Viana Casarin1,4 Early acquisition of a pathogenic microbiota and the presence of dysbiosis in childhood is associated with susceptibility to and the familial aggregation of periodontitis. This longitudinal interventional case–control study aimed to evaluate the impact of parental periodontal disease on the acquisition of oral pathogens in their ofspring. Subgingival plaque and clinical periodontal metrics were collected from 18 parents with a history of generalized aggressive periodontitis and their children (6–12 years of age), and 18 periodontally healthy parents and their parents at baseline and following professional oral prophylaxis. 16S rRNA amplicon sequencing revealed that parents were the primary source of the child’s microbiome, afecting their microbial acquisition and diversity. Children of periodontitis parents were preferentially colonized by Filifactor alocis, Porphyromonas gingivalis, Aggregatibacter actinomycetemcomitans, Streptococcus parasanguinis, Fusobacterium nucleatum and several species belonging to the genus Selenomonas even in the absence of periodontitis, and these species controlled inter‑bacterial interactions. These pathogens also emerged as robust discriminators of the microbial signatures of children of parents with periodontitis. Plaque control did not modulate this pathogenic pattern, attesting to the microbiome’s resistance to change once it has been established. This study highlights the critical role played by parental disease in microbial colonization patterns in their ofspring and the early acquisition of periodontitis‑related species and underscores the need for greater surveillance and preventive measures in families of periodontitis patients. -
Washington State Annual Communicable Disease Report 2008
Washington State COMMUNICABLE DISEASE REPORT 2008 "The Department of Health works to protect and improve the health of people in Washington State." WASHINGTON STATE DEPARTMENT OF HEALTH Epidemiology, Health Statistics and Public Health Laboratories Communicable Disease Epidemiology Section 1610 NE 150th Street Shoreline, WA 98155 206-418-5500 or 1-877-539-4344 COMMUNICABLE DISEASE REPORT 2008 CONTRIBUTORS COMMUNICABLE DISEASE EPIDEMIOLOGY Rebecca Baer, MPH Katelin Bugler, MPH Mary Chadden Erin Chester, MPH Natasha Close, MPH Marisa D’Angeli, MD, MPH Chas DeBolt, RN, MPH Marcia Goldoft, MD, MPH Kathy Lofy, MD Kathryn MacDonald, PhD Nicola Marsden-Haug, MPH Judith May, RN, MPH Tracy Sandifer, MPH Phyllis Shoemaker, BA Deborah Todd, RN, MPH Sherryl Terletter Doreen Terao Wayne Turnberg, PhD, MSPH COMMUNITY AND FAMILY HEALTH Maria Courogen, MPH Kim Field, RN, MSN Salem Gugsa, MPH Tom Jaenicke, MPH, MBA, MES Shana Johnny, RN, MN Julieann Simon, MSPH i Mary Selecky Secretary of Health Maxine Hayes, MD, MPH Health Officer Dennis Dennis, PhD, RN Assistant Secretary Epidemiology, Health Statistics and Public Health Laboratories Judith May, RN, MPH Office Director for Communicable Disease Tony Marfin, MD, MPH, MA State Epidemiologist for Communicable Disease Romesh Gautom, PhD Director, Public Health Laboratories Juliet VanEenwyk, PhD, MS State Epidemiologist for Non-Infectious Disease This report represents Washington State communicable disease surveillance: the ongoing collection, analysis and dissemination of morbidity and mortality data to prevent -
Choosing the Appropriate Surface Disinfectant
antibiotics Review Back to Basics: Choosing the Appropriate Surface Disinfectant Angelica Artasensi , Sarah Mazzotta and Laura Fumagalli * Dipartimento di Scienze Farmaceutiche, Università degli Studi di Milano, Via L. Mangiagalli 25, 20133 Milano, Italy; [email protected] (A.A.); [email protected] (S.M.) * Correspondence: [email protected]; Tel.: +39-0250319303 Abstract: From viruses to bacteria, our lives are filled with exposure to germs. In built environments, exposure to infectious microorganisms and their byproducts is clearly linked to human health. In the last year, public health emergency surrounding the COVID-19 pandemic stressed the importance of having good biosafety measures and practices. To prevent infection from spreading and to maintain the barrier, disinfection and hygiene habits are crucial, especially when the microorganism can persist and survive on surfaces. Contaminated surfaces are called fomites and on them, microorganisms can survive even for months. As a consequence, fomites serve as a second reservoir and transfer pathogens between hosts. The knowledge of microorganisms, type of surface, and antimicrobial agent is fundamental to develop the best approach to sanitize fomites and to obtain good disinfection levels. Hence, this review has the purpose to briefly describe the organisms, the kind of risk associated with them, and the main classes of antimicrobials for surfaces, to help choose the right approach to prevent exposure to pathogens. Keywords: antimicrobial; disinfectant; surface disinfection; fomite; surface contamination; microor- ganisms Citation: Artasensi, A.; Mazzotta, S.; Fumagalli, L. Back to Basics: Choosing the Appropriate Surface 1. Introduction Disinfectant. Antibiotics 2021, 10, 613. In built environment, especially considering an indoor lifestyle, touching objects https://doi.org/10.3390/ or surfaces which surround us is integral to everyday life. -
Potential for Transmission of Antimicrobial Resistance In
Report of the Scientific Committee of the Food Safety Authority of Ireland 2015 Potential for Transmission of Antimicrobial Resistance in the Food Chain Report of the Scientific Committee of the Food Safety Authority of Ireland Potential for Transmission of Antimicrobial Resistance in the Food Chain Published by: Food Safety Authority of Ireland Abbey Court, Lower Abbey St Dublin 1 DO1 W2H4 Tel: +353 1 8171300 Fax: +353 1 8171301 [email protected] www.fsai.ie © FSAI 2015 Applications for reproduction should be made to the FSAI Information Unit ISBN 978-1-910348-01-7 Report of the Scientific Committee of the Food Safety Authority of Ireland Potential for Transmission of Antimicrobial Resistance in the Food Chain CONTENTS FOREWORD 4 ACKNOWLEDGEMENTS 5 ABBREVIATIONS 6 EXECUTIVE SUMMARY 7 CHAPTER 1. INTRODUCTION 10 1.1 The Scale of the Antimicrobial Resistance Problem ...................10 1.2 Human and Animals – The ‘One Health’ Concept.....................11 1.3 The Background to the Antimicrobial Resistance Problem . .11 1.4 Genetic Diversity, Genetic Determinants and Change in Bacteria . 14 1.5 Selection for Antimicrobial Resistance...............................15 1.6 Surveillance of Antimicrobial Resistance in Ireland and Europe . .15 1.7 Prudent Use of Antimicrobials – Definition . 15 1.8 Surveillance of Antimicrobial Use in Ireland and Europe ...............16 1.9 Antimicrobials and the Food Chain . .16 1.10 Antimicrobial-resistant Bacteria and the Food Chain ..................16 1.11 Summary . .17 1.12 Chapter Bibliography..............................................17 CHAPTER 2. TERMS OF REFERENCE 20 2.1 Chapter Bibliography..............................................20 1 of 58 Report of the Scientific Potential for Transmission of Committee of the Food Safety Authority of Ireland Antimicrobial Resistance in the Food Chain CHAPTER 3. -
Mechanistic Transmission Modeling of COVID-19 on the Diamond Princess Cruise Ship Demonstrates the Importance of Aerosol Transmission
Mechanistic transmission modeling of COVID-19 on the Diamond Princess cruise ship demonstrates the importance of aerosol transmission Parham Azimia,1, Zahra Keshavarza, Jose Guillermo Cedeno Laurenta, Brent Stephensb, and Joseph G. Allena,1 aEnvironmental Health Department, Harvard T.H. Chan School of Public Health, Boston, MA 02115; and bDepartment of Civil, Architectural, and Environmental Engineering, Illinois Institute of Technology, Chicago, IL 60616 Edited by Andrea Rinaldo, École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland, and approved January 7, 2021 (received for review July 22, 2020) Several lines of existing evidence support the possibility of spreads (3). CDC has also acknowledged that airborne trans- airborne transmission of coronavirus disease 2019 (COVID-19). mission by smaller droplets traveling more than 1.8 m away from However, quantitative information on the relative importance of infected individual(s) can sometimes occur (4). transmission pathways of severe acute respiratory syndrome coro- Since the beginning of the pandemic, numerous researchers navirus 2 (SARS-CoV-2) remains limited. To evaluate the relative (5–15) and professional societies [e.g., American Society of Heat- importance of multiple transmission routes for SARS-CoV-2, we ing, Refrigerating and Air-Conditioning Engineers (16)] have raised developed a modeling framework and leveraged detailed informa- concerns that transmission of SARS-CoV-2 can occur from both tion available from the Diamond Princess cruise ship outbreak that symptomatic and asymptomatic (or presymptomatic) individuals to occurred in early 2020. We modeled 21,600 scenarios to generate a others beyond close-range contact through a combination of larger matrix of solutions across a full range of assumptions for eight respiratory droplets that are carried further than 1 to 2 m via air- unknown or uncertain epidemic and mechanistic transmission fac- flow patterns and smaller inhalable aerosols that can remain sus- R2 > tors. -
Zoonotic Diseases Fact Sheet
ZOONOTIC DISEASES FACT SHEET s e ion ecie s n t n p is ms n e e s tio s g s m to a a o u t Rang s p t tme to e th n s n m c a s a ra y a re ho Di P Ge Ho T S Incub F T P Brucella (B. Infected animals Skin or mucous membrane High and protracted (extended) fever. 1-15 weeks Most commonly Antibiotic melitensis, B. (swine, cattle, goats, contact with infected Infection affects bone, heart, reported U.S. combination: abortus, B. suis, B. sheep, dogs) animals, their blood, tissue, gallbladder, kidney, spleen, and laboratory-associated streptomycina, Brucellosis* Bacteria canis ) and other body fluids causes highly disseminated lesions bacterial infection in tetracycline, and and abscess man sulfonamides Salmonella (S. Domestic (dogs, cats, Direct contact as well as Mild gastroenteritiis (diarrhea) to high 6 hours to 3 Fatality rate of 5-10% Antibiotic cholera-suis, S. monkeys, rodents, indirect consumption fever, severe headache, and spleen days combination: enteriditis, S. labor-atory rodents, (eggs, food vehicles using enlargement. May lead to focal chloramphenicol, typhymurium, S. rep-tiles [especially eggs, etc.). Human to infection in any organ or tissue of the neomycin, ampicillin Salmonellosis Bacteria typhi) turtles], chickens and human transmission also body) fish) and herd animals possible (cattle, chickens, pigs) All Shigella species Captive non-human Oral-fecal route Ranges from asymptomatic carrier to Varies by Highly infective. Low Intravenous fluids primates severe bacillary dysentery with high species. 16 number of organisms and electrolytes, fevers, weakness, severe abdominal hours to 7 capable of causing Antibiotics: ampicillin, cramps, prostration, edema of the days. -
Mask Use in the Context of COVID-19 Interim Guidance 1 December 2020
Mask use in the context of COVID-19 Interim guidance 1 December 2020 This document, which is an update of the guidance published patients wear the following types of mask/respirator in on 5 June 2020, includes new scientific evidence relevant to addition to other personal protective equipment that are the use of masks for reducing the spread of SARS-CoV-2, the part of standard, droplet and contact precautions: virus that causes COVID-19, and practical considerations. It medical mask in the absence of aerosol contains updated evidence and guidance on the following: generating procedures (AGPs) • mask management; respirator, N95 or FFP2 or FFP3 standards, or • SARS-CoV-2 transmission; equivalent in care settings for COVID-19 • masking in health facilities in areas with community, patients where AGPs are performed; these may cluster and sporadic transmission; be used by health workers when providing care • mask use by the public in areas with community and to COVID-19 patients in other settings if they cluster transmission; are widely available and if costs is not an issue. • alternatives to non-medical masks for the public; • In areas of known or suspected community or cluster • exhalation valves on respirators and non-medical masks; SARS-CoV-2 transmission WHO advises the following: • mask use during vigorous intensity physical activity; universal masking for all persons (staff, patients, visitors, service providers and others) within the • essential parameters to be considered when health facility (including primary, secondary manufacturing non-medical masks (Annex). and tertiary care levels; outpatient care; and Key points long-term care facilities) wearing of masks by inpatients when physical • The World Health Organization (WHO) advises the use distancing of at least 1 metre cannot be of masks as part of a comprehensive package of maintained or when patients are outside of their prevention and control measures to limit the spread of care areas. -
Defining the Sizes of Airborne Particles That Mediate Influenza Transmission in Ferrets
Defining the sizes of airborne particles that mediate influenza transmission in ferrets Jie Zhoua,1, Jianjian Weib,1, Ka-Tim Choya, Sin Fun Siaa, Dewi K. Rowlandsc, Dan Yua, Chung-Yi Wud, William G. Lindsleye, Benjamin J. Cowlinga, James McDevittf, Malik Peirisa,2, Yuguo Lib, and Hui-Ling Yena,2 aSchool of Public Health, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong SAR, China; bDepartment of Mechanical Engineering, The University of Hong Kong, Hong Kong SAR, China; cLaboratory Animal Services Centre, The Chinese University of Hong Kong, Hong Kong SAR, China; dGenomics Research Center, Academia Sinica, Taiwan, Republic of China; eAllergy and Clinical Immunology Branch, Health Effects Laboratory Division, National Institute for Occupational Safety and Health, Morgantown, WV 26505; and fDepartment of Environmental Health, Harvard School of Public Health, Boston, MA 02115 Contributed by Malik Peiris, January 16, 2018 (sent for review October 2, 2017; reviewed by Kanta Subbarao and Terrence M. Tumpey) Epidemics and pandemics of influenza are characterized by rapid ferrets via respiratory droplets, ferrets are often used to assess the global spread mediated by non-mutually exclusive transmission pandemic risk of zoonotic influenza viruses (11). However, the modes. The relative significance between contact, droplet, and conventional experimental settings cannot clarify the relative airborne transmission is yet to be defined, a knowledge gap for transmission efficiency of airborne particles of different sizes implementing evidence-based infection control measures. We that mediate droplet and airborne transmission. To address this devised a transmission chamber that separates virus-laden particles knowledge gap, we developed a transmission chamber capable by size and determined the particle sizes mediating transmission of separating influenza virus-laden particles into specific size of influenza among ferrets through the air.