Biotic Interactions in Experimental Antarctic Soil Microcosms Vary with Abiotic Stress
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Ecological and Evolutionary Effects of Interspecific Competition in Tits
Wilson Bull., 101(2), 1989, pp. 198-216 ECOLOGICAL AND EVOLUTIONARY EFFECTS OF INTERSPECIFIC COMPETITION IN TITS ANDRE A. DHONDT' AmTRAcT.-In this review the evidence for the existence of interspecific competition between members of the genus Purus is organized according to the time scale involved. Competition on an ecological time scale is amenable to experimental manipulation, whereas the effects of competition on an evolutionary time scale are not, Therefore the existence of competition has to be inferred mainly from comparisons between populations. Numerical effects of interspecific competition in coexisting populations on population parameters have been shown in several studies of Great and Blue tits (Parus major and P. caerulm) during the breeding season and during winter, and they have been suggested for the Black-capped Chickadee (P. atricapillus)and the Tufted Titmouse (P. bicolor).It is argued that the doubly asymmetric two-way interspecific competition between Great and Blue tits would have a stabilizing effect promoting their coexistence. Functional effects on niche use have been experimentally shown by removal or cage experiments between Willow (P. montanus)and Marsh (P. pahstris) tits, between Willow and Crested tits (P. cristatus)and Coal Tits (P. ater) and Goldcrests (Regulus reguh), and between Coal and Willow tits. Non-manipulative studies suggestthe existence of interspecific competition leading to rapid niche shifts between Crested and Willow tits and between Great and Willow tits. Evolutionary responses that can be explained as adaptations to variations in the importance of interspecific competition are numerous. An experiment failed to show that Blue Tit populations, subjected to different levels of interspecific competition by Great Tits, underwent divergent micro-evolutionary changes for body size. -
Abiotic Stresses and Its Management in Agriculture Assistant Professor
Abiotic Stresses And Its Management In Agriculture D.Vijayalakshmi Assistant Professor, Department of Crop Physiology, TNAU, Coimbatore Introduction In today‘s climate change sceranios, crops are exposed more frequently to episodes of abiotic stresses such as drought, salinity, elevated temperature, submergence and nutrient deficiencies. These stresses limit crop production. In recent years, advances in physiology, molecular biology and genetics have greatly improved our understanding of crops response to these stresses and the basis of varietal differences in tolerance. This chapter will clearly define the different abiotic stresses and their impacts on agricultural productivity. Stress – Definitions (i) Physical terms Stress is defined as the force per unit area acting upon a material, inducing strain and leading to dimensional change. More generally, it is used to describe the impact of adverse forces, and this is how it is usually applied to biological systems. (ii) Biological terms In the widest biological sense, stress can be any factor that may produce an adverse effect in individual organisms, populations or communities. Stress is also defined as the overpowering pressure that affects the normal functions of individual life or the conditions in which plants are prevented from fully expressing their genetic potential for 361 growth, development and reproduction (Levitt, 1980; Ernst, 1993). (iii) Agricultural terms Stress is defined as a phenomenon that limits crop productivity or destroys biomass (Grime, 1979). Classification Of Stresses It has become traditional for ecologists, physiologists, and agronomists to divide stresses experienced by plants into two major categories: biotic and abiotic. Biotic stresses originate through interactions between organisms, while abiotic stresses are those that depend on the interaction between organisms and the physical environment. -
Constructing and Analyzing Biological Interaction Networks for Knowledge Discovery
Constructing and Analyzing Biological Interaction Networks for Knowledge Discovery Dissertation Presented in Partial Fulfillment of the Requirements for the Degree Doctor of Philosophy in the Graduate School of The Ohio State University By Duygu Ucar Graduate Program in Computer Science and Engineering The Ohio State University 2009 Dissertation Committee: Srinivasan Parthasarathy, Advisor Yusu Wang Umit Catalyurek c Copyright by Duygu Ucar 2009 ABSTRACT Many biological datasets can be effectively modeled as interaction networks where nodes represent biological entities of interest such as proteins, genes, or complexes and edges mimic associations among them. The study of these biological network structures can provide insight into many biological questions including the functional characterization of genes and gene products, the characterization of DNA-protein bindings, and the under- standing of regulatory mechanisms. Therefore, the task of constructing biological interac- tion networks from raw data sets and exploiting information from these networks is critical, but is also fraught with challenges. First, the network structure is not always known in a priori; the structure should be inferred from raw and heterogeneous biological data sources. Second, biological networks are noisy (containing unreliable interactions) and incomplete (missing real interactions) which makes the task of extracting useful information difficult. Third, typically these networks have non-trivial topological properties (e.g., uneven degree distribution, small world) that limit the effectiveness of traditional knowledge discovery al- gorithms. Fourth, these networks are usually dynamic and investigation of their dynamics is essential to understand the underlying biological system. In this thesis, we address these issues by presenting a set of computational techniques that we developed to construct and analyze three specific types of biological interaction networks: protein-protein interaction networks, gene co-expression networks, and regulatory networks. -
Symbiotic Relationship in Which One Organism Benefits and the Other Is Unaffected
Ecology Quiz Review – ANSWERS! 1. Commensalism – symbiotic relationship in which one organism benefits and the other is unaffected. Mutualism – symbiotic relationship in which both organisms benefit. Parasitism – symbiotic relationship in which one organism benefits and the other is harmed or killed. Predation – a biological interaction where a predator feeds on a prey. 2A. Commensalism B. Mutualism C. Parasitism D. Predation 3. Autotrophic organisms produce their own food by way of photosynthesis. They are also at the base of a food chain or trophic pyramid. 4. Answer will vary – You will need two plants, two herbivores, and two carnivores 5. Decreases. Only 10% of the energy available at one level is passed to the next level. 6. If 10,000 units of energy are available to the grass at the bottom of the food chain, only 1000 units of energy will be available to the primary consumer, and only 100 units will be available to the secondary consumer. 7. Population is the number of a specific species living in an area. 8. B – All members of the Turdis migratorius species. 9. The number of secondary consumers would increase. 10. The energy decreases as you move up the pyramid which is indicated by the pyramid becoming smaller near the top. 11. Second highest-level consumer would increase. 12. Primary consumer would decrease due to higher numbers of secondary consumer. 13. The number of organisms would decrease due to the lack of food for primary consumers. Other consumers would decrease as the numbers of their food source declined. 14. Number of highest-level consumers would decrease due to lack of food. -
A Regional Study
POPULATION STRUCTURE AND INTERREGIONAL INTERACTION IN PRE- HISPANIC MESOAMERICA: A BIODISTANCE STUDY DISSERTATION Presented in Partial Fulfillment of the Requirements for the Degree Doctor of Philosophy in the Graduate School of the Ohio State University By B. Scott Aubry, B.A., M.A. ***** The Ohio State University 2009 Dissertation Committee: Approved by Professor Clark Spencer Larsen, Adviser Professor Paul Sciulli _________________________________ Adviser Professor Sam Stout Graduate Program in Anthropology Professor Robert DePhilip Copyright Bryan Scott Aubry 2009 ABSTRACT This study addresses long standing issues regarding the nature of interregional interaction between central Mexico and the Maya area through the analysis of dental variation. In total 25 sites were included in this study, from Teotihuacan and Tula, to Tikal and Chichen Itza. Many other sites were included in this study to obtain a more comprehensive picture of the biological relationships between these regions and to better estimate genetic heterozygosity for each sub-region. The scope of the present study results in a more comprehensive understanding of population interaction both within and between the sub-regions of Mesoamerica, and it allows for the assessment of differential interaction between sites on a regional scale. Both metric and non-metric data were recorded. Non-metric traits were scored according to the ASU system, and dental metrics include the mesiodistal and buccolingual dimensions at the CEJ following a modification of Hillson et al. (2005). Biodistance estimates were calculated for non-metric traits using Mean Measure of Divergence. R-matrix analysis, which provides an estimate of average genetic heterozygosity, was applied to the metric data. R-matrix analysis was performed for each of the sub-regions separately in order to detect specific sites that deviate from expected levels of genetic heterozygosity in each area. -
Phytomicrobiome Studies for Combating the Abiotic Stress
Review Volume 11, Issue 3, 2021, 10493 - 10509 https://doi.org/10.33263/BRIAC113.1049310509 Phytomicrobiome Studies for Combating the Abiotic Stress 1 2,* 3 4 Shefali , Mahipal Singh Sankhla , Rajeev Kumar , Swaroop S. Sonone 1 Department of Zoology, DPG Degree College, Gurugram, Haryana; [email protected] (S); 2 Department of Forensic Science, School of Basic and Applied Sciences, Galgotias University, Greater Noida; [email protected] (M.S.S.); 3 Department of Forensic Science, School of Basic and Applied Sciences, Galgotias University, Greater Noida; [email protected] (R.K.); 4 Student of M.Sc. Forensic Science, Government Institute of Forensic Science, Aurangabad, Maharashtra; [email protected] (S.S.S.); * Correspondence: [email protected]; Received: 27.09.2020; Revised: 25.10.2020; Accepted: 27.10.2020; Published: 31.10.2020 Abstract: Agricultural productivity is limited by the various factors of which stresses are the principal ones. The reactive oxygen species (ROS) production in different cell sections is done by protracted stress conditions. ROS outbreaks biomolecules and interrupts the unvarying mechanism of the cell that ultimately prods to cell death. Microbes, the highest normal inhabitants of diverse environments, have advanced complex physiological and metabolic mechanisms to manage with possibly toxic oxygen species produced by ecological stresses. The intricate mechanisms are involved in the plant microbiome. Increasing environmental variations during the incessant stress, growing an essential mark, and revealing plant-microbe association concerning protection against environmental challenges. Keywords: Abiotic stress; agricultural productivity; defense mechanism; Phytomicrobiome. © 2020 by the authors. This article is an open-access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). -
Biotic and Abiotic Stresses
Biotic and Abiotic Stresses Plants relentlessly encounter a wide range of environmental stresses which limits the agricultural productivity. The environmental stresses conferred to plants can be categorized as 1) Abiotic stress 2) Biotic stress Abiotic stresses include salinity, drought, flood, extremes in temperature, heavy metals, radiation etc. It is a foremost factor that causes the loss of major crop plants worldwide. This situation is going to be more rigorous due to increasing desertification of world’s terrestrial area, increasing salinization of soil and water, shortage of water resources and environmental pollution. Biotic stress includes attack by various pathogens such as fungi, bacteria, oomycetes, nematodes and herbivores. Diseases caused by these pathogens accounts for major yield loss worldwide. Being sessile plants have no choice to escape from these environmental cues. Expertise in tolerating these stresses is crucial for completing the lifecycle successfully. Therefore, to combat these threats plants have developed various mechanisms for getting adapted to such conditions for survival. They sense the external stress environment, get stimulated and then generate appropriate cellular responses. These cellular responses work by relaying the stimuli from sensors, located on the cell surface or cytoplasm to the transcriptional machinery which is situated in the nucleus, with the help of various signal transduction pathways. This leads to differential transcriptional changes making the plant tolerant against the stress. The signaling pathways play an indispensable role and acts as a connecting link between sensing the stress environment and generating an appropriate physiological and biochemi cal response (Zhu 2002). Recent studies using genomics and proteomics approach . Stresses Plants are constantly exposed to a variety of potential microbial pathogens such as fungi, bacteria, oomycetes, nematodes and herbivores. -
Plant Responses to Abiotic Stress in Their Natural Habitats
View metadata, citation and similar papers at core.ac.uk brought to you by CORE Bulletin UASVM, Horticulture 65(1)/2008 pISSN 1843-5254; eISSN 1843-5394 PLANT RESPONSES TO ABIOTIC STRESS IN THEIR NATURAL HABITATS BOSCAIU M. 1, C. LULL 2, A. LIDON2, I. BAUTISTA 2, P. DONAT 3, O. MAYORAL 3, O. VICENTE 4 1 Instituto Agroforestal Mediterráneo, 2 Departamento de Química, 3 Departamento de Ecosistemas Agroforestales, 4 Instituto de Biología Molecular y Celular de Plantas, Universidad Politécnica de Valencia, Camino de Vera s/n. 46022 Valencia, Spain, [email protected] Keywords: abiotic stress, stress tolerance mechanisms, halophytes, gypsophytes, xerophytes, ion homeostasis, osmolytes, antioxidant systems Abstract: The study of plant responses to abiotic stress is one of the most active research topics in plant biology, due to its unquestionable academic interest, but also because of its practical implications in agriculture, since abiotic stress (mainly draught and high soil salinity) is the major cause for the reduction in crop yields worldwide. Studies in model systems, such as Arabidopsis thaliana , have allowed to define general, basic molecular mechanisms of stress responses (regulation of osmotic balance and ion homeostasis, synthesis of protective metabolites and proteins, activation of antioxidant systems, etc.). However, these responses, in most cases, do not lead to stress tolerance; in fact, Arabidopsis , like most wild plants, and all important crops are rather sensitive, while some specialised plants (halophytes, gypsophytes, xerophytes…) are resistant to drastic abiotic stress conditions in their natural habitats. Therefore, the response mechanisms in plants naturally adapted to stress must be more efficient that those which operate in non-tolerant plants, although both may share the same molecular basis. -
Abiotic Stress Responses in Photosynthetic Organisms
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Dissertations & Theses in Natural Resources Natural Resources, School of 12-2011 Abiotic Stress Responses in Photosynthetic Organisms Joseph Msanne University of Nebrsaka-Lincoln, [email protected] Follow this and additional works at: https://digitalcommons.unl.edu/natresdiss Part of the Biology Commons, Natural Resources and Conservation Commons, and the Plant Biology Commons Msanne, Joseph, "Abiotic Stress Responses in Photosynthetic Organisms" (2011). Dissertations & Theses in Natural Resources. 37. https://digitalcommons.unl.edu/natresdiss/37 This Article is brought to you for free and open access by the Natural Resources, School of at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Dissertations & Theses in Natural Resources by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. ABIOTIC STRESS RESPONSES IN PHOTOSYNTHETIC ORGANISMS By Joseph Msanne A DISSERTATION Presented to the Faculty of The Graduate College at the University of Nebraska In Partial Fulfillment of Requirements For the Degree of Doctor of Philosophy Major: Natural Resource Sciences Under the Supervision of Professor Tala N. Awada Lincoln, Nebraska December, 2011 ABIOTIC STRESS RESPONSES IN PHOTOSYNTHETIC ORGANISMS Joseph Msanne, Ph.D. University of Nebraska, 2011 Advisor: Tala N. Awada Cellular and molecular aspects of abiotic stress responses in Arabidopsis thaliana subjected to cold, drought, and high salinity and in two photosynthetic green alga, Chlamydomonas reinhardtii and Coccomyxa sp. C-169, subjected to nitrogen deprivation were investigated. Cold, drought, and high salinity can negatively affect plant growth and crop production. The first research aimed at determining the physiological functions of the stress-responsive Arabidopsis thaliana RD29A and RD29B genes. -
Biomolecule and Bioentity Interaction Databases in Systems Biology: a Comprehensive Review
biomolecules Review Biomolecule and Bioentity Interaction Databases in Systems Biology: A Comprehensive Review Fotis A. Baltoumas 1,* , Sofia Zafeiropoulou 1, Evangelos Karatzas 1 , Mikaela Koutrouli 1,2, Foteini Thanati 1, Kleanthi Voutsadaki 1 , Maria Gkonta 1, Joana Hotova 1, Ioannis Kasionis 1, Pantelis Hatzis 1,3 and Georgios A. Pavlopoulos 1,3,* 1 Institute for Fundamental Biomedical Research, Biomedical Sciences Research Center “Alexander Fleming”, 16672 Vari, Greece; zafeiropoulou@fleming.gr (S.Z.); karatzas@fleming.gr (E.K.); [email protected] (M.K.); [email protected] (F.T.); voutsadaki@fleming.gr (K.V.); [email protected] (M.G.); hotova@fleming.gr (J.H.); [email protected] (I.K.); hatzis@fleming.gr (P.H.) 2 Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, 2200 Copenhagen, Denmark 3 Center for New Biotechnologies and Precision Medicine, School of Medicine, National and Kapodistrian University of Athens, 11527 Athens, Greece * Correspondence: baltoumas@fleming.gr (F.A.B.); pavlopoulos@fleming.gr (G.A.P.); Tel.: +30-210-965-6310 (G.A.P.) Abstract: Technological advances in high-throughput techniques have resulted in tremendous growth Citation: Baltoumas, F.A.; of complex biological datasets providing evidence regarding various biomolecular interactions. Zafeiropoulou, S.; Karatzas, E.; To cope with this data flood, computational approaches, web services, and databases have been Koutrouli, M.; Thanati, F.; Voutsadaki, implemented to deal with issues such as data integration, visualization, exploration, organization, K.; Gkonta, M.; Hotova, J.; Kasionis, scalability, and complexity. Nevertheless, as the number of such sets increases, it is becoming more I.; Hatzis, P.; et al. Biomolecule and and more difficult for an end user to know what the scope and focus of each repository is and how Bioentity Interaction Databases in redundant the information between them is. -
Growth, Death, and Resource Competition in Sessile Organisms
Growth, death, and resource competition in sessile organisms Edward D. Leea,1 , Christopher P. Kempesa, and Geoffrey B. Westa aSanta Fe Institute, Santa Fe, NM 87501 Edited by Nils Chr. Stenseth, University of Oslo, Oslo, Norway, and approved February 24, 2021 (received for review October 8, 2020) Population-level scaling in ecological systems arises from individ- and size (25–27) and build on allometric dependence of growth, ual growth and death with competitive constraints. We build on a mortality, and resource acquisition (28–36). In an alternative set minimal dynamical model of metabolic growth where the tension of approaches, mechanism-free maximum entropy principles can between individual growth and mortality determines population capture demographic patterns by fixing a few population “state size distribution. We then separately include resource competition variables” to predict measured properties (37). Across these based on shared capture area. By varying rates of growth, death, examples, forests are particularly well-studied empirically across and competitive attrition, we connect regular and random spatial diverse species, sizes, and environments (38, 39) and grounded patterns across sessile organisms from forests to ants, termites, on predicted theoretical regularities in space and demogra- and fairy circles. Then, we consider transient temporal dynamics phy such as in the context of metabolic scaling (40–43) and in the context of asymmetric competition, such as canopy shad- mechanical or hydraulic limits (44–47). ing or large colony dominance, whose effects primarily weaken Here, we build on previous work on forest growth and struc- the smaller of two competitors. When such competition couples ture to consider sessile organisms more broadly in the context of slow timescales of growth to fast competitive death, it generates both spatial structure and demographic dynamics. -
Abiotic Stress and Plant-Microbe Interactions in Norway Spruce
Abiotic stress and plant-microbe interactions in Norway spruce Julia Christa Haas Umeå Plant Science Centre Department of Plant Physiology Umeå University Umeå, Sweden 2018 This work is protected by the Swedish Copyright Legislation (Act 1960:729) © Julia Christa Haas ISBN: 978-91-7601-970-2 Cover photo: Julia Haas, Robert Haas Electronic version available at: http://umu.diva-portal.org/ Printed by: KBC Service Centre, Umeå University Umeå, Sweden 2018 “Before I came here I was confused about this subject. Having listened to your lecture I am still confused. But on a higher level.” Enrico Fermi Table of Contents Abstract ........................................................................................... ii Enkel sammanfattning på svenska ................................................... iv List of publications .......................................................................... vi Acknowledgements ........................................................................ vii Introduction ..................................................................................... 1 Abiotic stress in plants ................................................................................................... 3 Mechanisms of cold tolerance ........................................................................................ 3 Drought stress response .................................................................................................. 7 Plant microbe interactions ...........................................................................................