4832.Full.Pdf

Total Page:16

File Type:pdf, Size:1020Kb

4832.Full.Pdf IFN-α-Induced Signal Transduction, Gene Expression, and Antitumor Activity of Immune Effector Cells Are Negatively Regulated by Suppressor of Cytokine This information is current as Signaling Proteins of September 24, 2021. Jason M. Zimmerer, Gregory B. Lesinski, Sri Vidya Kondadasula, Volodymyr I. Karpa, Amy Lehman, Abhik RayChaudhury, Brian Becknell and William E. Carson III J Immunol 2007; 178:4832-4845; ; Downloaded from doi: 10.4049/jimmunol.178.8.4832 http://www.jimmunol.org/content/178/8/4832 http://www.jimmunol.org/ References This article cites 65 articles, 29 of which you can access for free at: http://www.jimmunol.org/content/178/8/4832.full#ref-list-1 Why The JI? Submit online. • Rapid Reviews! 30 days* from submission to initial decision by guest on September 24, 2021 • No Triage! Every submission reviewed by practicing scientists • Fast Publication! 4 weeks from acceptance to publication *average Subscription Information about subscribing to The Journal of Immunology is online at: http://jimmunol.org/subscription Permissions Submit copyright permission requests at: http://www.aai.org/About/Publications/JI/copyright.html Email Alerts Receive free email-alerts when new articles cite this article. Sign up at: http://jimmunol.org/alerts The Journal of Immunology is published twice each month by The American Association of Immunologists, Inc., 1451 Rockville Pike, Suite 650, Rockville, MD 20852 Copyright © 2007 by The American Association of Immunologists All rights reserved. Print ISSN: 0022-1767 Online ISSN: 1550-6606. The Journal of Immunology IFN-␣-Induced Signal Transduction, Gene Expression, and Antitumor Activity of Immune Effector Cells Are Negatively Regulated by Suppressor of Cytokine Signaling Proteins1 Jason M. Zimmerer,*† Gregory B. Lesinski,† Sri Vidya Kondadasula,† Volodymyr I. Karpa,† Amy Lehman,‡ Abhik RayChaudhury,§ Brian Becknell,† and William E. Carson III2†¶ Proteins belonging to the suppressors of cytokine signaling (SOCS) family have been shown to regulate cytokine signal trans- duction in various cell types but their role in modulating the response of immune cells to IFN-␣ has not been fully explored. We hypothesized that SOCS proteins would inhibit the antitumor activity of IFN-␣-stimulated immune cells. Transcripts for SOCS1, SOCS2, SOCS3, and cytokine-inducible Src homology 2-containing protein were identified in total human PBMC (PBMCs, NK 3 5 cells, and T cells) within 1–2 h of stimulation with IFN-␣ (10 –10 U/ml). Immunoblot analysis confirmed the expression of these Downloaded from factors at the protein level. Transcripts for SOCS proteins were rapidly but variably induced in PBMCs from patients with metastatic melanoma following the i.v. administration of IFN-␣-2b (20 million units/m2). Overexpression of SOCS1 and SOCS3, but not SOCS2, in the Jurkat T cell line inhibited IFN-␣-induced phosphorylated STAT1 and the transcription of IFN-stimulated genes. Conversely, small inhibitory RNA-mediated down-regulation of SOCS1 and SOCS3 in Jurkat cells and normal T cells enhanced the transcriptional response to IFN-␣. Loss of SOCS1 or SOCS3 in murine immune effectors was associated with enhanced IFN-induced phosphorylated STAT1, transcription of IFN-stimulated genes, and antitumor activity. Of note, IFN-␣ http://www.jimmunol.org/ treatment eliminated melanoma tumors in 70% of SOCS1-deficient mice, whereas IFN-treated SOCS-competent mice all died. The .antitumor effects of IFN-␣ in tumor-bearing SOCS1-deficient mice were markedly inhibited following depletion of CD8؉ T cells These results indicate that the antitumor response of immune effector cells to exogenous IFN-␣ is regulated by SOCS proteins. The Journal of Immunology, 2007, 178: 4832–4845. ecombinant IFN-␣ is used to treat patients with meta- The receptor for IFN-␣ is widely expressed on both tumor cells static malignant melanoma and is associated with an and immune effector cells (8, 12). Binding of IFN-␣ to its receptor overall response rate of 10–15% (1–3). High-dose IFN-␣ activates Jak1 and tyrosine kinase 2, which in turn phosphorylate R by guest on September 24, 2021 is also used as an adjuvant in patients who have undergone resec- tyrosine residues within the cytoplasmic region of the receptor. tion of high-risk lesions (nodal disease or primary tumors of These phosphotyrosine residues provide docking sites for STAT1 Breslow thickness Ͼ4 mm) (1, 3–6). However, it has been difficult and STAT2, latent cytoplasmic transcription factors that are phos- to determine the optimal dose of IFN-␣ for melanoma patients or phorylated by the Jaks (13). The prototypical IFN-␣-signaling re- devise strategies to enhance the antitumor effects of IFN-␣ because action results in the formation of IFN-stimulated gene factor 3, a its cellular targets and mechanism of action are largely unknown. DNA-binding complex that consists of STAT1␣ (or STAT1␤), Although exogenous administration of IFN-␣ can act directly on STAT2, and IFN regulatory factor 9 (14). IFN-stimulated gene melanoma cells to inhibit proliferation and up-regulate the expression factor 3 subsequently translocates to the nucleus and binds to IFN- of MHC class I Ags, its stimulatory properties on effector cells of the stimulated response elements located in the promoter regions of immune system are thought to be critical for its antitumor activity IFN-responsive genes (15). These signaling events induce the ex- (7–10). Dunn et al. (11) have also shown that endogenously produced pression of a variety of immunoregulatory genes and largely de- IFN-␣ is required for the prevention of carcinogen-induced tumors termine the pattern of immune cell activation following exposure and that host immune effector cells are critical targets of IFN-␣ during to IFN-␣ (9, 16–19). We have previously demonstrated a high the development of protective antitumor responses. degree of variability in the formation of phosphorylated STAT1 (P-STAT1)3 in patient immune effector cells following IFN-␣-2b immunotherapy and have shown that Jak-STAT signal transduc- *Integrated Biomedical Sciences Graduate Program, †Human Cancer Genetics Pro- tion is down-regulated at higher dose levels of IFN-␣ (20). These gram, Department of Molecular Virology, Immunology, and Medical Genetics, ‡Cen- data suggested that negative regulatory pathways might influence ter for Biostatistics, §Department of Pathology, ¶Department of Surgery, The Ohio State University, Columbus, OH 43210 signal transduction and gene expression in human immune cells following exposure to IFN-␣. Received for publication August 31, 2006. Accepted for publication January 30, 2007. Investigators have identified a family of proteins termed sup- The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked advertisement in accordance pressors of cytokine signaling (SOCS) that negatively regulate with 18 U.S.C. Section 1734 solely to indicate this fact. 1 This work was supported by a seed grant from the Immunology Program of The 3 Abbreviations used in this paper: P-STAT1, phosphorylated STAT1; SOCS, sup- Ohio State University-Comprehensive Cancer Center and the Harry J. Lloyd Chari- pressor of cytokine signaling; SH2, Src homology 2; CIS, cytokine-inducible SH2- table Trust (to G.B.L.) and National Institutes of Health Grants P01 CA95426, K24 containing protein; ISG, IFN-stimulated gene; siRNA, small inhibitory RNA; hu, CA93670 (to W.E.C.), and P30 CA16058. human; EGFP, enhanced GFP; DC, dendritic cell; GH, growth hormone; MU, million 2 Address correspondence and reprint requests to Dr. William E. Carson III, Depart- units. ment of Surgery, The Ohio State University, N924 Doan Hall, 410 West 10th Avenue, Columbus, OH 43210. E-mail address: [email protected] Copyright © 2007 by The American Association of Immunologists, Inc. 0022-1767/07/$2.00 www.jimmunol.org The Journal of Immunology 4833 Downloaded from http://www.jimmunol.org/ by guest on September 24, 2021 FIGURE 1. SOCS transcripts are rapidly induced in PBMCs following IFN-␣ stimulation. PBMCs from normal donors were treated with IFN-␣ (103–105 U/ml) or PBS and SOCS mRNA levels were measured by real-time PCR at four time points (0.5, 1, 2, 4 h) using primers specific for (A) SOCS1, (B) SOCS2,(C) SOCS3,or(D) CIS. Data were expressed as the mean fold increase relative to baseline levels (PBS treatment). All real-time PCR data were normalized to the level of ␤-actin mRNA (housekeeping gene). E, Phosphorylation of STAT1 at Tyr701 was measured in parallel by flow cytometry. Mean-specific fluorescence (Fsp) is illustrated on the y-axis. Appropriate isotype control Abs were used to determine background staining. All flow cytometric data were derived from at least 10,000 events gated on the lymphocyte populations determined by light scatter properties (forward scattervs .Statistically significant results vs PBS treatment ,ء .(side scatter). Error bars denote the 95% confidence interval of triplicate experiments (three donors PBMCs were isolated from normal donors, stimulated with IFN-␣ (104 U/ml), and harvested at various times (1, 3, 5, 7, 24 h). Following immunopre- cipitation, SOCS protein levels were measured by immunoprecipitation and subsequent immunoblot analysis using Abs directed against (F) SOCS1, SOCS2, SOCS3, or CIS. Lysates from a SOCS-overexpressing human melanoma cell line (HT144) were used as positive controls. Due to the immuno- precipitation protocol, levels of ␤-actin were measured separately to control for loading. Densitometric
Recommended publications
  • A Computational Approach for Defining a Signature of Β-Cell Golgi Stress in Diabetes Mellitus
    Page 1 of 781 Diabetes A Computational Approach for Defining a Signature of β-Cell Golgi Stress in Diabetes Mellitus Robert N. Bone1,6,7, Olufunmilola Oyebamiji2, Sayali Talware2, Sharmila Selvaraj2, Preethi Krishnan3,6, Farooq Syed1,6,7, Huanmei Wu2, Carmella Evans-Molina 1,3,4,5,6,7,8* Departments of 1Pediatrics, 3Medicine, 4Anatomy, Cell Biology & Physiology, 5Biochemistry & Molecular Biology, the 6Center for Diabetes & Metabolic Diseases, and the 7Herman B. Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202; 2Department of BioHealth Informatics, Indiana University-Purdue University Indianapolis, Indianapolis, IN, 46202; 8Roudebush VA Medical Center, Indianapolis, IN 46202. *Corresponding Author(s): Carmella Evans-Molina, MD, PhD ([email protected]) Indiana University School of Medicine, 635 Barnhill Drive, MS 2031A, Indianapolis, IN 46202, Telephone: (317) 274-4145, Fax (317) 274-4107 Running Title: Golgi Stress Response in Diabetes Word Count: 4358 Number of Figures: 6 Keywords: Golgi apparatus stress, Islets, β cell, Type 1 diabetes, Type 2 diabetes 1 Diabetes Publish Ahead of Print, published online August 20, 2020 Diabetes Page 2 of 781 ABSTRACT The Golgi apparatus (GA) is an important site of insulin processing and granule maturation, but whether GA organelle dysfunction and GA stress are present in the diabetic β-cell has not been tested. We utilized an informatics-based approach to develop a transcriptional signature of β-cell GA stress using existing RNA sequencing and microarray datasets generated using human islets from donors with diabetes and islets where type 1(T1D) and type 2 diabetes (T2D) had been modeled ex vivo. To narrow our results to GA-specific genes, we applied a filter set of 1,030 genes accepted as GA associated.
    [Show full text]
  • Transcriptional Control of Tissue-Resident Memory T Cell Generation
    Transcriptional control of tissue-resident memory T cell generation Filip Cvetkovski Submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in the Graduate School of Arts and Sciences COLUMBIA UNIVERSITY 2019 © 2019 Filip Cvetkovski All rights reserved ABSTRACT Transcriptional control of tissue-resident memory T cell generation Filip Cvetkovski Tissue-resident memory T cells (TRM) are a non-circulating subset of memory that are maintained at sites of pathogen entry and mediate optimal protection against reinfection. Lung TRM can be generated in response to respiratory infection or vaccination, however, the molecular pathways involved in CD4+TRM establishment have not been defined. Here, we performed transcriptional profiling of influenza-specific lung CD4+TRM following influenza infection to identify pathways implicated in CD4+TRM generation and homeostasis. Lung CD4+TRM displayed a unique transcriptional profile distinct from spleen memory, including up-regulation of a gene network induced by the transcription factor IRF4, a known regulator of effector T cell differentiation. In addition, the gene expression profile of lung CD4+TRM was enriched in gene sets previously described in tissue-resident regulatory T cells. Up-regulation of immunomodulatory molecules such as CTLA-4, PD-1, and ICOS, suggested a potential regulatory role for CD4+TRM in tissues. Using loss-of-function genetic experiments in mice, we demonstrate that IRF4 is required for the generation of lung-localized pathogen-specific effector CD4+T cells during acute influenza infection. Influenza-specific IRF4−/− T cells failed to fully express CD44, and maintained high levels of CD62L compared to wild type, suggesting a defect in complete differentiation into lung-tropic effector T cells.
    [Show full text]
  • Suppression of Cytokine Signaling by SOCS3: Characterization of the Mode of Inhibition and the Basis of Its Specificity
    View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Immunity Article Suppression of Cytokine Signaling by SOCS3: Characterization of the Mode of Inhibition and the Basis of Its Specificity Jeffrey J. Babon,1,2,5,* Nadia J. Kershaw,1,3,5 James M. Murphy,1,2,5 Leila N. Varghese,1,2 Artem Laktyushin,1 Samuel N. Young,1 Isabelle S. Lucet,4 Raymond S. Norton,1,2,6 and Nicos A. Nicola1,2,* 1Walter and Eliza Hall Institute of Medical Research, 1G Royal Pde, Parkville, 3052, VIC, Australia 2The University of Melbourne, Royal Parade, Parkville, 3050, VIC, Australia 3Ludwig Institute for Cancer Research, Royal Pde, Parkville, 3050, VIC, Australia 4Monash University, Wellington Rd, Clayton, 3800, VIC, Australia 5These authors contributed equally to this work 6Present address: Monash Institute of Pharmaceutical Sciences, Monash University, Parkville 3052, Australia *Correspondence: [email protected] (J.J.B.), [email protected] (N.A.N.) DOI 10.1016/j.immuni.2011.12.015 SUMMARY Genetic deletion of each individual JAK leads to various immunological and hematopoietic defects; however, aberrant Janus kinases (JAKs) are key effectors in controlling activation of JAKs can be likewise pathological. Three myelopro- immune responses and maintaining hematopoiesis. liferative disorders (polycythemia vera, essential thrombocythe- SOCS3 (suppressor of cytokine signaling-3) is a mia, and primary myelofibrosis) are caused by a single point major regulator of JAK signaling and here we investi- mutation in JAK2 (JAK2V617F)(James et al., 2005; Levine et al., gate the molecular basis of its mechanism of action.
    [Show full text]
  • Supplementary Material DNA Methylation in Inflammatory Pathways Modifies the Association Between BMI and Adult-Onset Non- Atopic
    Supplementary Material DNA Methylation in Inflammatory Pathways Modifies the Association between BMI and Adult-Onset Non- Atopic Asthma Ayoung Jeong 1,2, Medea Imboden 1,2, Akram Ghantous 3, Alexei Novoloaca 3, Anne-Elie Carsin 4,5,6, Manolis Kogevinas 4,5,6, Christian Schindler 1,2, Gianfranco Lovison 7, Zdenko Herceg 3, Cyrille Cuenin 3, Roel Vermeulen 8, Deborah Jarvis 9, André F. S. Amaral 9, Florian Kronenberg 10, Paolo Vineis 11,12 and Nicole Probst-Hensch 1,2,* 1 Swiss Tropical and Public Health Institute, 4051 Basel, Switzerland; [email protected] (A.J.); [email protected] (M.I.); [email protected] (C.S.) 2 Department of Public Health, University of Basel, 4001 Basel, Switzerland 3 International Agency for Research on Cancer, 69372 Lyon, France; [email protected] (A.G.); [email protected] (A.N.); [email protected] (Z.H.); [email protected] (C.C.) 4 ISGlobal, Barcelona Institute for Global Health, 08003 Barcelona, Spain; [email protected] (A.-E.C.); [email protected] (M.K.) 5 Universitat Pompeu Fabra (UPF), 08002 Barcelona, Spain 6 CIBER Epidemiología y Salud Pública (CIBERESP), 08005 Barcelona, Spain 7 Department of Economics, Business and Statistics, University of Palermo, 90128 Palermo, Italy; [email protected] 8 Environmental Epidemiology Division, Utrecht University, Institute for Risk Assessment Sciences, 3584CM Utrecht, Netherlands; [email protected] 9 Population Health and Occupational Disease, National Heart and Lung Institute, Imperial College, SW3 6LR London, UK; [email protected] (D.J.); [email protected] (A.F.S.A.) 10 Division of Genetic Epidemiology, Medical University of Innsbruck, 6020 Innsbruck, Austria; [email protected] 11 MRC-PHE Centre for Environment and Health, School of Public Health, Imperial College London, W2 1PG London, UK; [email protected] 12 Italian Institute for Genomic Medicine (IIGM), 10126 Turin, Italy * Correspondence: [email protected]; Tel.: +41-61-284-8378 Int.
    [Show full text]
  • The Genomics of Oral Poliovirus Vaccine
    THE GENOMICS OF ORAL POLIOVIRUS VACCINE RESPONSE IN BANGLADESHI INFANTS by Genevieve L. Wojcik, MHS A dissertation submitted to the Johns Hopkins University in conformity with the requirements for the degree of Doctor of Philosophy Baltimore, Maryland, USA October 2013 © Genevieve L. Wojcik All Rights Reserved Abstract The success of Oral Poliovirus Vaccine (OPV) in eradicating poliovirus has set an example for the immense potential of oral vaccines in preventing enteric infections. It is widely considered the standard for oral vaccines aiming to elicit a mucosal immune response. Despite being validated in diverse populations worldwide, there still remain some individuals that fail to mount an adequate response to vaccination with OPV. It has been hypothesized that this may be due to host genetics, as the heritability is estimated to be high (60%) and there have been ethnic differences in response. To address this question we conducted a genome-wide association study (GWAS) in 357 Bangladeshi children comparing individuals that fail to mount an immune response to high responders of OPV. Four different approaches were conducted to elucidate genetic risk loci: (1) a traditional GWAS analysis, (2) a correlation of the GWAS results with signatures of positive selection, (3) an application of gene-level methods to the GWAS results, and (4) an application of pathway-level methods to the GWAS results. Because there is no consensus as to the best gene- and pathway-level methods, a simulation experiment was conducted to systematically evaluate their relative performance. The traditional GWAS assessed the association of 6.6 million single nucleotide polymorphisms (SNPs) across the human genome, adjusted for stunting (height-for-age Z-score (HAZ) < -2).
    [Show full text]
  • SOCS4 Expressed by Recombinant HSV Protects Against Cytokine Storm in a Mouse Model
    ONCOLOGY REPORTS 41: 1509-1520, 2019 SOCS4 expressed by recombinant HSV protects against cytokine storm in a mouse model SHUQI REN1, XIAOQING CHEN2, RONGQUAN HUANG3, GRACE GUOYING ZHOU2,4 and ZHUQING YUAN1 1Department of Microbiology and Immunology, Guangzhou Medical University, Guangzhou, Guangdong 510182; 2Immvira Co., Ltd., Shenzhen International Institute for Biomedical Research, Shenzhen, Guangdong 518116; 3Department of Pathology; 4School of Basic Medical Sciences, Guangzhou Medical University, Guangzhou, Guangdong 510182, P.R. China Received June 20, 2018; Accepted November 30, 2018 DOI: 10.3892/or.2018.6935 Abstract. Oncolytic viruses are genetically engineered viruses be a useful regulator to inhibit cytokine overproduction, and designed for the treatment of solid tumors, and are often coupled that HSV-SOCS4 may provide a possible solution to control with the antitumor immunity of the host. The challenge of cytokine storm and its consequences following induction by using oncolytic herpes simplex virus (oHSV) as an efficacious oncolytic virus treatment. oncolytic agent is the potential host tissue damage caused by the production of a range of cytokines following intratumoral Introduction oHSV injection. An HSV-suppressor of cytokine signaling 4 (SOCS4) recombinant virus was created to investigate whether Oncolytic viruses (OVs) are genetically engineered viruses it inhibits cytokine storm. Recombinant HSV-SOCS4 and that selectively replicate in and kill cancer cells, and represent HSV-1(F) were used to infect mice, and levels of several a novel type of antitumor therapy (1-4). This approach has representative cytokines, including monocyte chemoattractant numerous advantages as a cancer therapeutic agent due to its protein-1, interleukin (IL)-1β, tumor necrosis factor-α, IL-6 mechanism-based selectivity, potential for mediating tumor and interferon γ, in serum and bronchoalveolar lavage fluid cell death and possibility of expressing additional therapeutic (BALF) of infected mice were determined, and immune cells transgenes at the tumor site (5,6).
    [Show full text]
  • Expression of SOCS1 and SOCS3 Genes Is Differentially Regulated in Breast Cancer Cells in Response to Proinflammatory Cytokine and Growth Factor Signals
    Oncogene (2007) 26, 1941–1948 & 2007 Nature Publishing Group All rights reserved 0950-9232/07 $30.00 www.nature.com/onc ORIGINAL ARTICLE Expression of SOCS1 and SOCS3 genes is differentially regulated in breast cancer cells in response to proinflammatory cytokine and growth factor signals MK Evans1, C-R Yu2, A Lohani1, RM Mahdi2, X Liu2, AR Trzeciak1 and CE Egwuagu2 1Laboratory of Cellular and Molecular Biology, National Institute on Aging, National Institutes of Health, Baltimore, MD, USA and 2Laboratory of Immunology, National Eye Institute, National Institutes of Health, Bethesda, MD, USA DNA-hypermethylation of SOCS genes in breast, ova- Keywords: breast-cancer cells; SOCS; breast cancer; STAT; rian, squamous cell and hepatocellular carcinoma has led BRCA1; DNA hypermethylation; interferon to speculation that silencing of SOCS1 and SOCS3 genes might promote oncogenic transformation of epithelial tissues. To examine whether transcriptional silencing of SOCS genes is a common feature of human carcinoma, we have investigated regulation of SOCS genes expression by Introduction IFNc, IGF-1 and ionizing radiation, in a normal human mammary epithelial cell line (AG11134), two breast- Development of the mammary gland is regulated by cancer cell lines (MCF-7, HCC1937) and three prostate factors that coordinate proliferation, differentiation, cancer cell lines. Compared to normal breast cells, we maturation and apoptosis of mammary epithelial cells. observe a high level constitutive expression of SOCS2, Exquisite control of the initiation, strength and duration SOCS3, SOCS5, SOCS6, SOCS7, CIS and/or SOCS1 of signals from the diverse array of cytokines and genes in the human cancer cells. In MCF-7 and HCC1937 growth factors in mammalian breast is essential to the breast-cancer cells, transcription of SOCS1 is dramati- timely initiation of the menstrual cycle, lactation or cally up-regulated by IFNc and/or ionizing-radiation breast lobule involution (Medina, 2005).
    [Show full text]
  • Structural Insights Into Substrate Recognition by the SOCS2 E3 Ubiquitin Ligase
    bioRxiv preprint doi: https://doi.org/10.1101/470187; this version posted March 15, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 1 Title 2 Structural insights into substrate recognition by the SOCS2 E3 ubiquitin ligase 3 4 Authors 5 Wei-Wei Kung*, Sarath Ramachandran*, Nikolai Makukhin*, Elvira Bruno, Alessio Ciulli 6 *These authors contributed equally to this work 7 8 Address 9 Division of Biological Chemistry and Drug Discovery, School of Life Sciences, University of 10 Dundee, James Black Centre, Dow Street, Dundee, DD1 5EH, United Kingdom 11 12 Abstract 13 The suppressor of cytokine signaling 2 (SOCS2) acts as substrate recognition subunit of a 14 Cullin5 E3 ubiquitin ligase complex. SOCS2 binds to phosphotyrosine-modified epitopes 15 as degrons for ubiquitination and proteasomal degradation, yet the molecular basis of 16 substrate recognition has remained elusive. We solved co-crystal structures of SOCS2- 17 ElonginB-ElonginC in complex with phosphorylated peptides from substrates growth 18 hormone receptor (GHR-pY595) and erythropoietin receptor (EpoR-pY426) at 1.98 Å and 19 2.69 Å, respectively. Both peptides bind in an extended conformation recapitulating the 20 canonical SH2 domain-pY pose, yet capture different conformations of the EF loop via 21 specific hydrophobic interactions. The flexible BG loop, for the first time fully defined in the 22 electron density, does not contact the substrate degrons directly. Cancer-associated SNPs 23 located around the pY pocket weaken substrate-binding affinity in biophysical assays.
    [Show full text]
  • Bioinformatics Analysis for the Identification of Differentially Expressed Genes and Related Signaling Pathways in H
    Bioinformatics analysis for the identification of differentially expressed genes and related signaling pathways in H. pylori-CagA transfected gastric cancer cells Dingyu Chen*, Chao Li, Yan Zhao, Jianjiang Zhou, Qinrong Wang and Yuan Xie* Key Laboratory of Endemic and Ethnic Diseases , Ministry of Education, Guizhou Medical University, Guiyang, China * These authors contributed equally to this work. ABSTRACT Aim. Helicobacter pylori cytotoxin-associated protein A (CagA) is an important vir- ulence factor known to induce gastric cancer development. However, the cause and the underlying molecular events of CagA induction remain unclear. Here, we applied integrated bioinformatics to identify the key genes involved in the process of CagA- induced gastric epithelial cell inflammation and can ceration to comprehend the potential molecular mechanisms involved. Materials and Methods. AGS cells were transected with pcDNA3.1 and pcDNA3.1::CagA for 24 h. The transfected cells were subjected to transcriptome sequencing to obtain the expressed genes. Differentially expressed genes (DEG) with adjusted P value < 0.05, | logFC |> 2 were screened, and the R package was applied for gene ontology (GO) enrichment and the Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis. The differential gene protein–protein interaction (PPI) network was constructed using the STRING Cytoscape application, which conducted visual analysis to create the key function networks and identify the key genes. Next, the Submitted 20 August 2020 Kaplan–Meier plotter survival analysis tool was employed to analyze the survival of the Accepted 11 March 2021 key genes derived from the PPI network. Further analysis of the key gene expressions Published 15 April 2021 in gastric cancer and normal tissues were performed based on The Cancer Genome Corresponding author Atlas (TCGA) database and RT-qPCR verification.
    [Show full text]
  • The Role of SOCS Proteins in the Development of Virus
    Xie et al. Virol J (2021) 18:74 https://doi.org/10.1186/s12985-021-01544-w REVIEW Open Access The role of SOCS proteins in the development of virus- induced hepatocellular carcinoma Jinyan Xie1,2†, Mingshu Wang1,2,3†, Anchun Cheng1,2,3* , Renyong Jia1,2,3, Dekang Zhu2,3, Mafeng Liu1,2,3, Shun Chen1,2,3, XinXin Zhao1,2,3, Qiao Yang1,2,3, Ying Wu1,2,3, Shaqiu Zhang1,2,3, Qihui Luo2, Yin Wang2, Zhiwen Xu2, Zhengli Chen2, Ling Zhu2, Yunya Liu1,2,3, Yanling Yu1,2,3, Ling Zhang1,2,3 and Xiaoyue Chen1,2,3 Abstract Background: Liver cancer has become one of the most common cancers and has a high mortality rate. Hepatocel- lular carcinoma is one of the most common liver cancers, and its occurrence and development process are associated with chronic hepatitis B virus (HBV) and hepatitis C virus (HCV) infections. Main body The serious consequences of chronic hepatitis virus infections are related to the viral invasion strategy. Furthermore, the viral escape mechanism has evolved during long-term struggles with the host. Studies have increasingly shown that suppressor of cytokine signaling (SOCS) proteins participate in the viral escape process. SOCS proteins play an important role in regulating cytokine signaling, particularly the Janus kinase-signal transducer and activator of tran- scription (JAK-STAT) signaling pathway. Cytokines stimulate the expression of SOCS proteins, in turn, SOCS proteins inhibit cytokine signaling by blocking the JAK-STAT signaling pathway, thereby achieving homeostasis. By utiliz- ing SOCS proteins, chronic hepatitis virus infection may destroy the host’s antiviral responses to achieve persistent infection.
    [Show full text]
  • Identification of Common Gene Networks Responsive To
    Cancer Gene Therapy (2014) 21, 542–548 © 2014 Nature America, Inc. All rights reserved 0929-1903/14 www.nature.com/cgt ORIGINAL ARTICLE Identification of common gene networks responsive to radiotherapy in human cancer cells D-L Hou1, L Chen2, B Liu1, L-N Song1 and T Fang1 Identification of the genes that are differentially expressed between radiosensitive and radioresistant cancers by global gene analysis may help to elucidate the mechanisms underlying tumor radioresistance and improve the efficacy of radiotherapy. An integrated analysis was conducted using publicly available GEO datasets to detect differentially expressed genes (DEGs) between cancer cells exhibiting radioresistance and cancer cells exhibiting radiosensitivity. Gene Ontology (GO) enrichment analyses, Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis and protein–protein interaction (PPI) networks analysis were also performed. Five GEO datasets including 16 samples of radiosensitive cancers and radioresistant cancers were obtained. A total of 688 DEGs across these studies were identified, of which 374 were upregulated and 314 were downregulated in radioresistant cancer cell. The most significantly enriched GO terms were regulation of transcription, DNA-dependent (GO: 0006355, P = 7.00E-09) for biological processes, while those for molecular functions was protein binding (GO: 0005515, P = 1.01E-28), and those for cellular component was cytoplasm (GO: 0005737, P = 2.81E-26). The most significantly enriched pathway in our KEGG analysis was Pathways in cancer (P = 4.20E-07). PPI network analysis showed that IFIH1 (Degree = 33) was selected as the most significant hub protein. This integrated analysis may help to predict responses to radiotherapy and may also provide insights into the development of individualized therapies and novel therapeutic targets.
    [Show full text]
  • Role of the SOCS in Monocytes/Macrophages- Related
    Pharmacological Reports Copyright © 2012 2012, 64, 10381054 by Institute of Pharmacology ISSN 1734-1140 Polish Academy of Sciences Review RoleoftheSOCSinmonocytes/macrophages- relatedpathologies.Arewegettingcloserto anewpharmacologicaltarget? Krzysztof£abuzek1,DariuszSuchy1,Bo¿enaGabryel2,OlgaPierzcha³a1, Bogus³awOkopieñ1 1Department of Internal Medicine and Clinical Pharmacology, 2Department of Pharmacology, Medical University of Silesia, Medyków 18, PL 40-752 Katowice, Poland Correspondence: Krzysztof £abuzek: e-mail: [email protected] Abstract: The suppressors of cytokine signalling (SOCS) are proteins that restrict the functions of cytokines. Since their discovery, the state of knowledge regarding the SOCS is being regularly updated. One of the aspects of their importance concerns the immune system and its elements. Macrophages are one of the key cell types expressing SOCS and subsequently influence multiple biological processes. Presently, the scientific understanding of potential therapeutic value of SOCS is increasing. Considering this, we review and summa- rize the most recent findings regarding the role of SOCS in the macrophages in various aspects, including viral and bacterial infec- tions, modulation of anti-inflammatory properties of drugs and other substances, cancer, arthritis, inflammatory bowel disease, the neural system, hormone signalling and others. The multiplicity of the connections between macrophages, SOCS and biological reac- tionsmaysuggestthatinvestigationsintothisrelationshipwillcontinuetobeofgreatimportance.
    [Show full text]