The Emerging Role of Suppressors of Cytokine Signaling (SOCS) in the Development and Progression of Leukemia
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A Computational Approach for Defining a Signature of Β-Cell Golgi Stress in Diabetes Mellitus
Page 1 of 781 Diabetes A Computational Approach for Defining a Signature of β-Cell Golgi Stress in Diabetes Mellitus Robert N. Bone1,6,7, Olufunmilola Oyebamiji2, Sayali Talware2, Sharmila Selvaraj2, Preethi Krishnan3,6, Farooq Syed1,6,7, Huanmei Wu2, Carmella Evans-Molina 1,3,4,5,6,7,8* Departments of 1Pediatrics, 3Medicine, 4Anatomy, Cell Biology & Physiology, 5Biochemistry & Molecular Biology, the 6Center for Diabetes & Metabolic Diseases, and the 7Herman B. Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202; 2Department of BioHealth Informatics, Indiana University-Purdue University Indianapolis, Indianapolis, IN, 46202; 8Roudebush VA Medical Center, Indianapolis, IN 46202. *Corresponding Author(s): Carmella Evans-Molina, MD, PhD ([email protected]) Indiana University School of Medicine, 635 Barnhill Drive, MS 2031A, Indianapolis, IN 46202, Telephone: (317) 274-4145, Fax (317) 274-4107 Running Title: Golgi Stress Response in Diabetes Word Count: 4358 Number of Figures: 6 Keywords: Golgi apparatus stress, Islets, β cell, Type 1 diabetes, Type 2 diabetes 1 Diabetes Publish Ahead of Print, published online August 20, 2020 Diabetes Page 2 of 781 ABSTRACT The Golgi apparatus (GA) is an important site of insulin processing and granule maturation, but whether GA organelle dysfunction and GA stress are present in the diabetic β-cell has not been tested. We utilized an informatics-based approach to develop a transcriptional signature of β-cell GA stress using existing RNA sequencing and microarray datasets generated using human islets from donors with diabetes and islets where type 1(T1D) and type 2 diabetes (T2D) had been modeled ex vivo. To narrow our results to GA-specific genes, we applied a filter set of 1,030 genes accepted as GA associated. -
Transcriptional Control of Tissue-Resident Memory T Cell Generation
Transcriptional control of tissue-resident memory T cell generation Filip Cvetkovski Submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in the Graduate School of Arts and Sciences COLUMBIA UNIVERSITY 2019 © 2019 Filip Cvetkovski All rights reserved ABSTRACT Transcriptional control of tissue-resident memory T cell generation Filip Cvetkovski Tissue-resident memory T cells (TRM) are a non-circulating subset of memory that are maintained at sites of pathogen entry and mediate optimal protection against reinfection. Lung TRM can be generated in response to respiratory infection or vaccination, however, the molecular pathways involved in CD4+TRM establishment have not been defined. Here, we performed transcriptional profiling of influenza-specific lung CD4+TRM following influenza infection to identify pathways implicated in CD4+TRM generation and homeostasis. Lung CD4+TRM displayed a unique transcriptional profile distinct from spleen memory, including up-regulation of a gene network induced by the transcription factor IRF4, a known regulator of effector T cell differentiation. In addition, the gene expression profile of lung CD4+TRM was enriched in gene sets previously described in tissue-resident regulatory T cells. Up-regulation of immunomodulatory molecules such as CTLA-4, PD-1, and ICOS, suggested a potential regulatory role for CD4+TRM in tissues. Using loss-of-function genetic experiments in mice, we demonstrate that IRF4 is required for the generation of lung-localized pathogen-specific effector CD4+T cells during acute influenza infection. Influenza-specific IRF4−/− T cells failed to fully express CD44, and maintained high levels of CD62L compared to wild type, suggesting a defect in complete differentiation into lung-tropic effector T cells. -
Suppression of Cytokine Signaling by SOCS3: Characterization of the Mode of Inhibition and the Basis of Its Specificity
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Immunity Article Suppression of Cytokine Signaling by SOCS3: Characterization of the Mode of Inhibition and the Basis of Its Specificity Jeffrey J. Babon,1,2,5,* Nadia J. Kershaw,1,3,5 James M. Murphy,1,2,5 Leila N. Varghese,1,2 Artem Laktyushin,1 Samuel N. Young,1 Isabelle S. Lucet,4 Raymond S. Norton,1,2,6 and Nicos A. Nicola1,2,* 1Walter and Eliza Hall Institute of Medical Research, 1G Royal Pde, Parkville, 3052, VIC, Australia 2The University of Melbourne, Royal Parade, Parkville, 3050, VIC, Australia 3Ludwig Institute for Cancer Research, Royal Pde, Parkville, 3050, VIC, Australia 4Monash University, Wellington Rd, Clayton, 3800, VIC, Australia 5These authors contributed equally to this work 6Present address: Monash Institute of Pharmaceutical Sciences, Monash University, Parkville 3052, Australia *Correspondence: [email protected] (J.J.B.), [email protected] (N.A.N.) DOI 10.1016/j.immuni.2011.12.015 SUMMARY Genetic deletion of each individual JAK leads to various immunological and hematopoietic defects; however, aberrant Janus kinases (JAKs) are key effectors in controlling activation of JAKs can be likewise pathological. Three myelopro- immune responses and maintaining hematopoiesis. liferative disorders (polycythemia vera, essential thrombocythe- SOCS3 (suppressor of cytokine signaling-3) is a mia, and primary myelofibrosis) are caused by a single point major regulator of JAK signaling and here we investi- mutation in JAK2 (JAK2V617F)(James et al., 2005; Levine et al., gate the molecular basis of its mechanism of action. -
An Immunoevasive Strategy Through Clinically-Relevant Pan-Cancer Genomic and Transcriptomic Alterations of JAK-STAT Signaling Components
bioRxiv preprint doi: https://doi.org/10.1101/576645; this version posted March 14, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. An immunoevasive strategy through clinically-relevant pan-cancer genomic and transcriptomic alterations of JAK-STAT signaling components Wai Hoong Chang1 and Alvina G. Lai1, 1Nuffield Department of Medicine, University of Oxford, Old Road Campus, Oxford, OX3 7FZ, United Kingdom Since its discovery almost three decades ago, the Janus ki- Although cytokines are responsible for inflammation in nase (JAK)-signal transducer and activator of transcription cancer, spontaneous eradication of tumors by endoge- (STAT) pathway has paved the road for understanding inflam- nous immune processes rarely occurs. Moreover, the matory and immunity processes related to a wide range of hu- dynamic interaction between tumor cells and host immu- man pathologies including cancer. Several studies have demon- nity shields tumors from immunological ablation, which strated the importance of JAK-STAT pathway components in overall limits the efficacy of immunotherapy in the clinic. regulating tumor initiation and metastatic progression, yet, the extent of how genetic alterations influence patient outcome is far from being understood. Focusing on 133 genes involved in Cytokines can be pro- or anti-inflammatory and are inter- JAK-STAT signaling, we found that copy number alterations dependent on each other’s function to maintain immune underpin transcriptional dysregulation that differs within and homeostasis(3). -
Impact of Chromosome 9 Numerical Imbalances in Oral Squamous Cell Carcinoma: a Pilot Grid-Based Centromere Analysis
diagnostics Communication Impact of Chromosome 9 Numerical Imbalances in Oral Squamous Cell Carcinoma: A Pilot Grid-Based Centromere Analysis 1, 1, 2, Efthymios Kyrodimos y , Aristeidis Chrysovergis y , Nicholas Mastronikolis y, Evangelos Tsiambas 3,*, Christos Riziotis 4,5,* , Dimitrios Roukas 6, Panagiotis Fotiades 7, Chara Stavraka 8 , Vasileios Ragos 9, Minas Paschopoulos 10 and Vasileios Papanikolaou 1 1 1st ENT Department, Hippocration General Hospital, University of Athens, 115 27 Athens, Greece; [email protected] (E.K.); [email protected] (A.C.); [email protected] (V.P.) 2 ENT Department, Medical School, University of Patras, 265 04 Patras, Greece; [email protected] 3 Department of Cytopathology, 417 Veterans Army Hospital (NIMTS), 115 21 Athens, Greece 4 Theoretical and Physical Chemistry Institute, Photonics for Nanoapplications Laboratory, National Hellenic Research Foundation, 11635 Athens, Greece 5 Defence & Security Research Institute, University of Nicosia, CY-2417 Nicosia, Cyprus 6 Department of Psychiatry, 417 Veterans Army Hospital (NIMTS), 115 21 Athens, Greece; [email protected] 7 Department of Surgery, 424 General Army Hospital, 564 29 Thessaloniki, Greece; [email protected] 8 Department of Medical Oncology, Guy’s and St Thomas National Health System Foundation Trust, London SE1 9RT, UK; [email protected] 9 Department of Maxillofacial Surgery, Medical School, University of Ioannina, 455 00 Ioannina, Greece; [email protected] 10 Department of Obstetrics and Gynaecology, School of Health Sciences, University of Ioannina, 455 00 Ioannina, Greece; [email protected] * Correspondence: [email protected] (E.T.); [email protected] (C.R.); Tel.: +00306946939414 (E.T.) These authors are equally contributed. y Received: 16 June 2020; Accepted: 14 July 2020; Published: 21 July 2020 Abstract: Oral squamous cell carcinoma (OSCC) is considered an aggressive malignancy, mainly due to its increased propensity to provide local and distant lymph node metastases. -
Suppressor of Cytokine Signaling (SOCS) 5 Utilises Distinct Domains for Regulation of JAK1 and Interaction with the Adaptor Protein Shc-1
Suppressor of Cytokine Signaling (SOCS) 5 Utilises Distinct Domains for Regulation of JAK1 and Interaction with the Adaptor Protein Shc-1 Edmond M. Linossi1,2, Indu R. Chandrashekaran3, Tatiana B. Kolesnik1,2, James M. Murphy1,2, Andrew I. Webb1,2, Tracy A. Willson1,2, Lukasz Kedzierski1,2, Alex N. Bullock4, Jeffrey J. Babon1,2, Raymond S. Norton3, Nicos A. Nicola1,2, Sandra E. Nicholson1,2* 1 Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia, 2 The University of Melbourne, Parkville, Victoria, Australia, 3 Monash Institute of Pharmaceutical Sciences, Monash University, Parkville, Victoria, Australia, 4 Structural Genomics Consortium, University of Oxford, Oxford, United Kingdom Abstract Suppressor of Cytokine Signaling (SOCS)5 is thought to act as a tumour suppressor through negative regulation of JAK/ STAT and epidermal growth factor (EGF) signaling. However, the mechanism/s by which SOCS5 acts on these two distinct pathways is unclear. We show for the first time that SOCS5 can interact directly with JAK via a unique, conserved region in its N-terminus, which we have termed the JAK interaction region (JIR). Co-expression of SOCS5 was able to specifically reduce JAK1 and JAK2 (but not JAK3 or TYK2) autophosphorylation and this function required both the conserved JIR and additional sequences within the long SOCS5 N-terminal region. We further demonstrate that SOCS5 can directly inhibit JAK1 kinase activity, although its mechanism of action appears distinct from that of SOCS1 and SOCS3. In addition, we identify phosphoTyr317 in Shc-1 as a high-affinity substrate for the SOCS5-SH2 domain and suggest that SOCS5 may negatively regulate EGF and growth factor-driven Shc-1 signaling by binding to this site. -
Cutting Edge: Expression of IRF8 in Gastric Epithelial Cells Confers
Cutting Edge: Expression of IRF8 in Gastric Epithelial Cells Confers Protective Innate Immunity against Helicobacter pylori Infection This information is current as of September 27, 2021. Ming Yan, Hongsheng Wang, Jiafang Sun, Wei Liao, Peng Li, Yin Zhu, Chengfu Xu, Jungsoo Joo, Yan Sun, Sadia Abbasi, Alexander Kovalchuk, Nonghua Lv, Warren J. Leonard and Herbert C. Morse III J Immunol published online 3 February 2016 Downloaded from http://www.jimmunol.org/content/early/2016/02/02/jimmun ol.1500766 http://www.jimmunol.org/ Supplementary http://www.jimmunol.org/content/suppl/2016/02/02/jimmunol.150076 Material 6.DCSupplemental Why The JI? Submit online. • Rapid Reviews! 30 days* from submission to initial decision • No Triage! Every submission reviewed by practicing scientists by guest on September 27, 2021 • Fast Publication! 4 weeks from acceptance to publication *average Subscription Information about subscribing to The Journal of Immunology is online at: http://jimmunol.org/subscription Permissions Submit copyright permission requests at: http://www.aai.org/About/Publications/JI/copyright.html Email Alerts Receive free email-alerts when new articles cite this article. Sign up at: http://jimmunol.org/alerts The Journal of Immunology is published twice each month by The American Association of Immunologists, Inc., 1451 Rockville Pike, Suite 650, Rockville, MD 20852 Copyright © 2016 by The American Association of Immunologists, Inc. All rights reserved. Print ISSN: 0022-1767 Online ISSN: 1550-6606. Published February 3, 2016, doi:10.4049/jimmunol.1500766 Th eJournal of Cutting Edge Immunology Cutting Edge: Expression of IRF8 in Gastric Epithelial Cells Confers Protective Innate Immunity against Helicobacter pylori Infection x x Ming Yan,*,1 Hongsheng Wang,†,1 Jiafang Sun,† Wei Liao,‡, Peng Li,‡, { † Yin Zhu, ChengfuXu,*JungsooJoo,*YanSun,*SadiaAbbasi,{ x Alexander Kovalchuk,† Nonghua Lv, Warren J. -
Original Article Identification of SOCS Family Members with Prognostic Values in Human Ovarian Cancer
Am J Transl Res 2020;12(5):1824-1838 www.ajtr.org /ISSN:1943-8141/AJTR0102959 Original Article Identification of SOCS family members with prognostic values in human ovarian cancer Mengqi Yang1,2, Huanting Chen6, Lin Zhou3, Xiaobo Huang1,2,4, Fengxi Su1,2, Peng Wang1,5 1Guangdong Provincial Key Laboratory of Malignant Tumor Epigenetics and Gene Regulation, Medical Research Center, Sun Yat-Sen Memorial Hospital, Sun Yat-Sen University, Guangzhou, China; 2Breast Tumor Center, Departments of 3Critical Care Medicine, 4Radiation Oncology, 5Emergency Medicine, Sun Yat-Sen Memorial Hospital, Sun Yat-Sen University, Guangzhou, China; 6Department of General Surgery, People’s Hospital of Shenzhen Baoan District, Affiliated Shenzhen Baoan Hospital of Southern Medical University, Shenzhen, China Received September 28, 2019; Accepted April 24, 2020; Epub May 15, 2020; Published May 30, 2020 Abstract: Background: Suppressor of cytokine signaling (SOCS) family proteins regulate cytokine responses through inhibition of multiple signaling pathways. The expression profiles and prognostic significance of SOCS members in ovarian cancer (OC) patients still remains unclear. Here, we aimed to provide a comprehensive understanding of the prognostic values of SOCS family members in OC and to discover promising therapeutic targets for OC. Methods: We firstly analyzed the KEGG pathway enrichment to reveal the possible pathways associated with SOCS family. Next, we used public databases including cBioPortal, Human Protein Atlas and Oncomine to investigate genetic altera- tions and mRNA expression of SOCS family in OC patients. More importantly, we explored the prognostic value of each individual SOCS members in OC patients using Kaplan Meier plotter database. Results: SOCS family was mark- edly enriched in JAK-STAT signaling pathway. -
Supplementary Material DNA Methylation in Inflammatory Pathways Modifies the Association Between BMI and Adult-Onset Non- Atopic
Supplementary Material DNA Methylation in Inflammatory Pathways Modifies the Association between BMI and Adult-Onset Non- Atopic Asthma Ayoung Jeong 1,2, Medea Imboden 1,2, Akram Ghantous 3, Alexei Novoloaca 3, Anne-Elie Carsin 4,5,6, Manolis Kogevinas 4,5,6, Christian Schindler 1,2, Gianfranco Lovison 7, Zdenko Herceg 3, Cyrille Cuenin 3, Roel Vermeulen 8, Deborah Jarvis 9, André F. S. Amaral 9, Florian Kronenberg 10, Paolo Vineis 11,12 and Nicole Probst-Hensch 1,2,* 1 Swiss Tropical and Public Health Institute, 4051 Basel, Switzerland; [email protected] (A.J.); [email protected] (M.I.); [email protected] (C.S.) 2 Department of Public Health, University of Basel, 4001 Basel, Switzerland 3 International Agency for Research on Cancer, 69372 Lyon, France; [email protected] (A.G.); [email protected] (A.N.); [email protected] (Z.H.); [email protected] (C.C.) 4 ISGlobal, Barcelona Institute for Global Health, 08003 Barcelona, Spain; [email protected] (A.-E.C.); [email protected] (M.K.) 5 Universitat Pompeu Fabra (UPF), 08002 Barcelona, Spain 6 CIBER Epidemiología y Salud Pública (CIBERESP), 08005 Barcelona, Spain 7 Department of Economics, Business and Statistics, University of Palermo, 90128 Palermo, Italy; [email protected] 8 Environmental Epidemiology Division, Utrecht University, Institute for Risk Assessment Sciences, 3584CM Utrecht, Netherlands; [email protected] 9 Population Health and Occupational Disease, National Heart and Lung Institute, Imperial College, SW3 6LR London, UK; [email protected] (D.J.); [email protected] (A.F.S.A.) 10 Division of Genetic Epidemiology, Medical University of Innsbruck, 6020 Innsbruck, Austria; [email protected] 11 MRC-PHE Centre for Environment and Health, School of Public Health, Imperial College London, W2 1PG London, UK; [email protected] 12 Italian Institute for Genomic Medicine (IIGM), 10126 Turin, Italy * Correspondence: [email protected]; Tel.: +41-61-284-8378 Int. -
The Genomics of Oral Poliovirus Vaccine
THE GENOMICS OF ORAL POLIOVIRUS VACCINE RESPONSE IN BANGLADESHI INFANTS by Genevieve L. Wojcik, MHS A dissertation submitted to the Johns Hopkins University in conformity with the requirements for the degree of Doctor of Philosophy Baltimore, Maryland, USA October 2013 © Genevieve L. Wojcik All Rights Reserved Abstract The success of Oral Poliovirus Vaccine (OPV) in eradicating poliovirus has set an example for the immense potential of oral vaccines in preventing enteric infections. It is widely considered the standard for oral vaccines aiming to elicit a mucosal immune response. Despite being validated in diverse populations worldwide, there still remain some individuals that fail to mount an adequate response to vaccination with OPV. It has been hypothesized that this may be due to host genetics, as the heritability is estimated to be high (60%) and there have been ethnic differences in response. To address this question we conducted a genome-wide association study (GWAS) in 357 Bangladeshi children comparing individuals that fail to mount an immune response to high responders of OPV. Four different approaches were conducted to elucidate genetic risk loci: (1) a traditional GWAS analysis, (2) a correlation of the GWAS results with signatures of positive selection, (3) an application of gene-level methods to the GWAS results, and (4) an application of pathway-level methods to the GWAS results. Because there is no consensus as to the best gene- and pathway-level methods, a simulation experiment was conducted to systematically evaluate their relative performance. The traditional GWAS assessed the association of 6.6 million single nucleotide polymorphisms (SNPs) across the human genome, adjusted for stunting (height-for-age Z-score (HAZ) < -2). -
SOCS4 Expressed by Recombinant HSV Protects Against Cytokine Storm in a Mouse Model
ONCOLOGY REPORTS 41: 1509-1520, 2019 SOCS4 expressed by recombinant HSV protects against cytokine storm in a mouse model SHUQI REN1, XIAOQING CHEN2, RONGQUAN HUANG3, GRACE GUOYING ZHOU2,4 and ZHUQING YUAN1 1Department of Microbiology and Immunology, Guangzhou Medical University, Guangzhou, Guangdong 510182; 2Immvira Co., Ltd., Shenzhen International Institute for Biomedical Research, Shenzhen, Guangdong 518116; 3Department of Pathology; 4School of Basic Medical Sciences, Guangzhou Medical University, Guangzhou, Guangdong 510182, P.R. China Received June 20, 2018; Accepted November 30, 2018 DOI: 10.3892/or.2018.6935 Abstract. Oncolytic viruses are genetically engineered viruses be a useful regulator to inhibit cytokine overproduction, and designed for the treatment of solid tumors, and are often coupled that HSV-SOCS4 may provide a possible solution to control with the antitumor immunity of the host. The challenge of cytokine storm and its consequences following induction by using oncolytic herpes simplex virus (oHSV) as an efficacious oncolytic virus treatment. oncolytic agent is the potential host tissue damage caused by the production of a range of cytokines following intratumoral Introduction oHSV injection. An HSV-suppressor of cytokine signaling 4 (SOCS4) recombinant virus was created to investigate whether Oncolytic viruses (OVs) are genetically engineered viruses it inhibits cytokine storm. Recombinant HSV-SOCS4 and that selectively replicate in and kill cancer cells, and represent HSV-1(F) were used to infect mice, and levels of several a novel type of antitumor therapy (1-4). This approach has representative cytokines, including monocyte chemoattractant numerous advantages as a cancer therapeutic agent due to its protein-1, interleukin (IL)-1β, tumor necrosis factor-α, IL-6 mechanism-based selectivity, potential for mediating tumor and interferon γ, in serum and bronchoalveolar lavage fluid cell death and possibility of expressing additional therapeutic (BALF) of infected mice were determined, and immune cells transgenes at the tumor site (5,6). -
SOCS-Mediated Immunomodulation of Natural Killer Cells T ⁎ Narelle Keating, Sandra E
Cytokine 118 (2019) 64–70 Contents lists available at ScienceDirect Cytokine journal homepage: www.elsevier.com/locate/cytokine Review article SOCS-mediated immunomodulation of natural killer cells T ⁎ Narelle Keating, Sandra E. Nicholson Walter and Eliza Hall Institute of Medical Research, Melbourne 3052, Australia Department of Medical Biology, University of Melbourne, Melbourne 3010, Australia ARTICLE INFO ABSTRACT Keywords: Natural killer (NK) cells are innate immune cells with an intrinsic ability to detect and kill infected and can- Cancer cerous cells. The success of therapies targeting immune checkpoints on CD8 cells has intensified interest in Immune checkpoints harnessing the cytolytic effector functions of NK cells for new cancer treatments. NK cell development, survival NK cells and effector activity is dependent on exposure to the cytokine interleukin (IL)-15. The suppressor ofcytokine SOCS proteins (SOCS) proteins (CIS; SOCS1-7) are important negative regulators of cytokine signaling, and both CIS and SOCS2 CIS are reported to have roles in regulating NK cell responses. Their immunomodulatory effects on NK cells suggest SOCS2 that these SOCS proteins are promising targets that can potentially form the basis of novel cancer therapies. Here we discuss the role of NK cells in tumor immunity as well as review the role of the SOCS proteins in regulating IL- 15 signaling and NK cell function. 1. Introduction success of the immune checkpoint inhibitors has stimulated efforts to harness the anti-tumor effector functions of NK cells. Whilst CTLA-4 is Cancer is a major cause of disease burden worldwide, with an es- expressed on the surface of activated murine NK cells, it does not ap- timated 8.2 million cancer-related deaths in 2012 [1] and 1,735,000 pear to be expressed on human NK cells [6].