Expression of SOCS1 and SOCS3 Genes Is Differentially Regulated in Breast Cancer Cells in Response to Proinflammatory Cytokine and Growth Factor Signals
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Quantitative Modelling Explains Distinct STAT1 and STAT3
bioRxiv preprint doi: https://doi.org/10.1101/425868; this version posted September 24, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. Title Quantitative modelling explains distinct STAT1 and STAT3 activation dynamics in response to both IFNγ and IL-10 stimuli and predicts emergence of reciprocal signalling at the level of single cells. 1,2, 3 1 1 1 1 1 2 Sarma U , Maitreye M , Bhadange S , Nair A , Srivastava A , Saha B , Mukherjee D . 1: National Centre for Cell Science, NCCS Complex, Ganeshkhind, SP Pune University Campus, Pune 411007, India. 2 : Corresponding author. [email protected] , [email protected] 3: Present address. Labs, Persistent Systems Limited, Pingala – Aryabhata, Erandwane, Pune, 411004 India. bioRxiv preprint doi: https://doi.org/10.1101/425868; this version posted September 24, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. Abstract Cells use IFNγ-STAT1 and IL-10-STAT3 pathways primarily to elicit pro and anti-inflammatory responses, respectively. However, activation of STAT1 by IL-10 and STAT3 by IFNγ is also observed. The regulatory mechanisms controlling the amplitude and dynamics of both the STATs in response to these functionally opposing stimuli remains less understood. Here, our experiments at cell population level show distinct early signalling dynamics of both STAT1 and STAT3(S/1/3) in responses to IFNγ and IL-10 stimulation. -
A Computational Approach for Defining a Signature of Β-Cell Golgi Stress in Diabetes Mellitus
Page 1 of 781 Diabetes A Computational Approach for Defining a Signature of β-Cell Golgi Stress in Diabetes Mellitus Robert N. Bone1,6,7, Olufunmilola Oyebamiji2, Sayali Talware2, Sharmila Selvaraj2, Preethi Krishnan3,6, Farooq Syed1,6,7, Huanmei Wu2, Carmella Evans-Molina 1,3,4,5,6,7,8* Departments of 1Pediatrics, 3Medicine, 4Anatomy, Cell Biology & Physiology, 5Biochemistry & Molecular Biology, the 6Center for Diabetes & Metabolic Diseases, and the 7Herman B. Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202; 2Department of BioHealth Informatics, Indiana University-Purdue University Indianapolis, Indianapolis, IN, 46202; 8Roudebush VA Medical Center, Indianapolis, IN 46202. *Corresponding Author(s): Carmella Evans-Molina, MD, PhD ([email protected]) Indiana University School of Medicine, 635 Barnhill Drive, MS 2031A, Indianapolis, IN 46202, Telephone: (317) 274-4145, Fax (317) 274-4107 Running Title: Golgi Stress Response in Diabetes Word Count: 4358 Number of Figures: 6 Keywords: Golgi apparatus stress, Islets, β cell, Type 1 diabetes, Type 2 diabetes 1 Diabetes Publish Ahead of Print, published online August 20, 2020 Diabetes Page 2 of 781 ABSTRACT The Golgi apparatus (GA) is an important site of insulin processing and granule maturation, but whether GA organelle dysfunction and GA stress are present in the diabetic β-cell has not been tested. We utilized an informatics-based approach to develop a transcriptional signature of β-cell GA stress using existing RNA sequencing and microarray datasets generated using human islets from donors with diabetes and islets where type 1(T1D) and type 2 diabetes (T2D) had been modeled ex vivo. To narrow our results to GA-specific genes, we applied a filter set of 1,030 genes accepted as GA associated. -
SOCS3 Antibody A
Revision 1 C 0 2 - t SOCS3 Antibody a e r o t S Orders: 877-616-CELL (2355) [email protected] Support: 877-678-TECH (8324) 3 2 Web: [email protected] 9 www.cellsignal.com 2 # 3 Trask Lane Danvers Massachusetts 01923 USA For Research Use Only. Not For Use In Diagnostic Procedures. Applications: Reactivity: Sensitivity: MW (kDa): Source: UniProt ID: Entrez-Gene Id: WB H M R Endogenous 26 Rabbit O14543 9021 Product Usage Information 5. Bjørbaek, C. et al. (1998) Mol Cell 1, 619-25. 6. Adams, T.E. et al. (1998) J Biol Chem 273, 1285-7. Application Dilution 7. Soriano, S.F. et al. (2002) J Exp Med 196, 311-21. 8. Emanuelli, B. et al. (2000) J Biol Chem 275, 15985-91. Western Blotting 1:1000 9. Stoiber, D. et al. (1999) J Immunol 163, 2640-7. 10. Stoiber, D. et al. (2001) J Immunol 166, 466-72. Storage 11. Roberts, A.W. et al. (2001) Proc Natl Acad Sci USA 98, 9324-9. 12. Seki, Y. et al. (2003) Nat Med 9, 1047-54. Supplied in 10 mM sodium HEPES (pH 7.5), 150 mM NaCl, 100 µg/ml BSA and 50% 13. Shouda, T. et al. (2001) J Clin Invest 108, 1781-8. glycerol. Store at –20°C. Do not aliquot the antibody. 14. Fang, M. et al. (2005) Cell Mol Immunol 2, 373-7. 15. Goren, I. et al. (2006) J Invest Dermatol 126, 477-85. Specificity / Sensitivity 16. Mori, H. et al. (2004) Nat Med 10, 739-43. 17. -
Japanese Encephalitis Virus Upregulates the Expression of SOCS3 in Mouse Brain and Raw264.7 Cells
Viruses2014, 6, 4280-4293; doi:10.3390/v6114280 OPEN ACCESS viruses ISSN 1999-4915 www.mdpi.com/journal/viruses Article Japanese Encephalitis Virus Upregulates the Expression of SOCS3 in Mouse Brain and Raw264.7 Cells Xiangmin Li 1,2, Qiaoyan Zhu 2, Qishu Cao 2, Huanchun Chen 1,2 and Ping Qian 1,2,* 1 State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, Hubei, China; E-Mails: [email protected] (X.L.); [email protected] (H.C.) 2 Laboratory of Animal Virology, College of Veterinary Medicine, Huazhong Agricultural University, Wuhan 430070, Hubei, China; E-Mails: [email protected] (Q.Z.); [email protected] (Q.C.) * Author to whom correspondence should be addressed; E-Mail: [email protected]; Tel./Fax: +86-27-87282608. External Editor: Eric O. Freed Received: 29 August 2014; in revised form: 21 October 2014 / Accepted: 23 October 2014 / Published: 10 November 2014 Abstract: Japanese encephalitis virus (JEV) is one of the pathogens that can invade the central nervous system, causing acute infection and inflammation of brain. SOCS3 protein plays a vital role in immune processes and inflammation of the central nervous system. In this study, Raw264.7 cells and suckling mice were infected with JEV, and SOCS3 expression was analyzed by the gene expression profile, semiquantitative RT-PCR, qRT-PCR, immunohistochemistry (IHC) and Western blot. Results indicated that 520 genes were found to be differentially expressed (fold change ≥ 2.0, p < 0.05) in total. The differentially regulated genes were involved in biological processes, such as stimulus response, biological regulation and immune system processes. -
Suppression of Cytokine Signaling by SOCS3: Characterization of the Mode of Inhibition and the Basis of Its Specificity
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Immunity Article Suppression of Cytokine Signaling by SOCS3: Characterization of the Mode of Inhibition and the Basis of Its Specificity Jeffrey J. Babon,1,2,5,* Nadia J. Kershaw,1,3,5 James M. Murphy,1,2,5 Leila N. Varghese,1,2 Artem Laktyushin,1 Samuel N. Young,1 Isabelle S. Lucet,4 Raymond S. Norton,1,2,6 and Nicos A. Nicola1,2,* 1Walter and Eliza Hall Institute of Medical Research, 1G Royal Pde, Parkville, 3052, VIC, Australia 2The University of Melbourne, Royal Parade, Parkville, 3050, VIC, Australia 3Ludwig Institute for Cancer Research, Royal Pde, Parkville, 3050, VIC, Australia 4Monash University, Wellington Rd, Clayton, 3800, VIC, Australia 5These authors contributed equally to this work 6Present address: Monash Institute of Pharmaceutical Sciences, Monash University, Parkville 3052, Australia *Correspondence: [email protected] (J.J.B.), [email protected] (N.A.N.) DOI 10.1016/j.immuni.2011.12.015 SUMMARY Genetic deletion of each individual JAK leads to various immunological and hematopoietic defects; however, aberrant Janus kinases (JAKs) are key effectors in controlling activation of JAKs can be likewise pathological. Three myelopro- immune responses and maintaining hematopoiesis. liferative disorders (polycythemia vera, essential thrombocythe- SOCS3 (suppressor of cytokine signaling-3) is a mia, and primary myelofibrosis) are caused by a single point major regulator of JAK signaling and here we investi- mutation in JAK2 (JAK2V617F)(James et al., 2005; Levine et al., gate the molecular basis of its mechanism of action. -
Suppressor of Cytokine Signaling (SOCS) 5 Utilises Distinct Domains for Regulation of JAK1 and Interaction with the Adaptor Protein Shc-1
Suppressor of Cytokine Signaling (SOCS) 5 Utilises Distinct Domains for Regulation of JAK1 and Interaction with the Adaptor Protein Shc-1 Edmond M. Linossi1,2, Indu R. Chandrashekaran3, Tatiana B. Kolesnik1,2, James M. Murphy1,2, Andrew I. Webb1,2, Tracy A. Willson1,2, Lukasz Kedzierski1,2, Alex N. Bullock4, Jeffrey J. Babon1,2, Raymond S. Norton3, Nicos A. Nicola1,2, Sandra E. Nicholson1,2* 1 Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia, 2 The University of Melbourne, Parkville, Victoria, Australia, 3 Monash Institute of Pharmaceutical Sciences, Monash University, Parkville, Victoria, Australia, 4 Structural Genomics Consortium, University of Oxford, Oxford, United Kingdom Abstract Suppressor of Cytokine Signaling (SOCS)5 is thought to act as a tumour suppressor through negative regulation of JAK/ STAT and epidermal growth factor (EGF) signaling. However, the mechanism/s by which SOCS5 acts on these two distinct pathways is unclear. We show for the first time that SOCS5 can interact directly with JAK via a unique, conserved region in its N-terminus, which we have termed the JAK interaction region (JIR). Co-expression of SOCS5 was able to specifically reduce JAK1 and JAK2 (but not JAK3 or TYK2) autophosphorylation and this function required both the conserved JIR and additional sequences within the long SOCS5 N-terminal region. We further demonstrate that SOCS5 can directly inhibit JAK1 kinase activity, although its mechanism of action appears distinct from that of SOCS1 and SOCS3. In addition, we identify phosphoTyr317 in Shc-1 as a high-affinity substrate for the SOCS5-SH2 domain and suggest that SOCS5 may negatively regulate EGF and growth factor-driven Shc-1 signaling by binding to this site. -
Original Article Identification of SOCS Family Members with Prognostic Values in Human Ovarian Cancer
Am J Transl Res 2020;12(5):1824-1838 www.ajtr.org /ISSN:1943-8141/AJTR0102959 Original Article Identification of SOCS family members with prognostic values in human ovarian cancer Mengqi Yang1,2, Huanting Chen6, Lin Zhou3, Xiaobo Huang1,2,4, Fengxi Su1,2, Peng Wang1,5 1Guangdong Provincial Key Laboratory of Malignant Tumor Epigenetics and Gene Regulation, Medical Research Center, Sun Yat-Sen Memorial Hospital, Sun Yat-Sen University, Guangzhou, China; 2Breast Tumor Center, Departments of 3Critical Care Medicine, 4Radiation Oncology, 5Emergency Medicine, Sun Yat-Sen Memorial Hospital, Sun Yat-Sen University, Guangzhou, China; 6Department of General Surgery, People’s Hospital of Shenzhen Baoan District, Affiliated Shenzhen Baoan Hospital of Southern Medical University, Shenzhen, China Received September 28, 2019; Accepted April 24, 2020; Epub May 15, 2020; Published May 30, 2020 Abstract: Background: Suppressor of cytokine signaling (SOCS) family proteins regulate cytokine responses through inhibition of multiple signaling pathways. The expression profiles and prognostic significance of SOCS members in ovarian cancer (OC) patients still remains unclear. Here, we aimed to provide a comprehensive understanding of the prognostic values of SOCS family members in OC and to discover promising therapeutic targets for OC. Methods: We firstly analyzed the KEGG pathway enrichment to reveal the possible pathways associated with SOCS family. Next, we used public databases including cBioPortal, Human Protein Atlas and Oncomine to investigate genetic altera- tions and mRNA expression of SOCS family in OC patients. More importantly, we explored the prognostic value of each individual SOCS members in OC patients using Kaplan Meier plotter database. Results: SOCS family was mark- edly enriched in JAK-STAT signaling pathway. -
Supplementary Material DNA Methylation in Inflammatory Pathways Modifies the Association Between BMI and Adult-Onset Non- Atopic
Supplementary Material DNA Methylation in Inflammatory Pathways Modifies the Association between BMI and Adult-Onset Non- Atopic Asthma Ayoung Jeong 1,2, Medea Imboden 1,2, Akram Ghantous 3, Alexei Novoloaca 3, Anne-Elie Carsin 4,5,6, Manolis Kogevinas 4,5,6, Christian Schindler 1,2, Gianfranco Lovison 7, Zdenko Herceg 3, Cyrille Cuenin 3, Roel Vermeulen 8, Deborah Jarvis 9, André F. S. Amaral 9, Florian Kronenberg 10, Paolo Vineis 11,12 and Nicole Probst-Hensch 1,2,* 1 Swiss Tropical and Public Health Institute, 4051 Basel, Switzerland; [email protected] (A.J.); [email protected] (M.I.); [email protected] (C.S.) 2 Department of Public Health, University of Basel, 4001 Basel, Switzerland 3 International Agency for Research on Cancer, 69372 Lyon, France; [email protected] (A.G.); [email protected] (A.N.); [email protected] (Z.H.); [email protected] (C.C.) 4 ISGlobal, Barcelona Institute for Global Health, 08003 Barcelona, Spain; [email protected] (A.-E.C.); [email protected] (M.K.) 5 Universitat Pompeu Fabra (UPF), 08002 Barcelona, Spain 6 CIBER Epidemiología y Salud Pública (CIBERESP), 08005 Barcelona, Spain 7 Department of Economics, Business and Statistics, University of Palermo, 90128 Palermo, Italy; [email protected] 8 Environmental Epidemiology Division, Utrecht University, Institute for Risk Assessment Sciences, 3584CM Utrecht, Netherlands; [email protected] 9 Population Health and Occupational Disease, National Heart and Lung Institute, Imperial College, SW3 6LR London, UK; [email protected] (D.J.); [email protected] (A.F.S.A.) 10 Division of Genetic Epidemiology, Medical University of Innsbruck, 6020 Innsbruck, Austria; [email protected] 11 MRC-PHE Centre for Environment and Health, School of Public Health, Imperial College London, W2 1PG London, UK; [email protected] 12 Italian Institute for Genomic Medicine (IIGM), 10126 Turin, Italy * Correspondence: [email protected]; Tel.: +41-61-284-8378 Int. -
(SOCS) Genes Are Downregulated in Breast Cancer Soudeh Ghafouri-Fard1, Vahid Kholghi Oskooei1, Iman Azari1 and Mohammad Taheri2,3*
Ghafouri-Fard et al. World Journal of Surgical Oncology (2018) 16:226 https://doi.org/10.1186/s12957-018-1529-9 RESEARCH Open Access Suppressor of cytokine signaling (SOCS) genes are downregulated in breast cancer Soudeh Ghafouri-Fard1, Vahid Kholghi Oskooei1, Iman Azari1 and Mohammad Taheri2,3* Abstract Background: The suppressor of cytokine signaling (SOCS) family of proteins are inhibitors of the cytokine-activated Janus kinase/signal transducers and activators of transcription (JAK/STAT) signaling pathway. We aimed at evaluation of expression of SOCS genes in breast cancer. Methods: We evaluated expression of SOCS1–3 and SOCS5 genes in breast cancer samples compared with the corresponding adjacent non-cancerous tissues (ANCTs). Results: All assessed SOCS genes were significantly downregulated in tumoral tissues compared with ANCTs. SOCS1 and SOCS2 genes were significantly overexpressed in higher grade samples, but SOCS3 had the opposite trend. Significant correlations were found between expression levels of SOCS genes. The SOCS1 and SOCS2 expression levels had the best specificity and sensitivity values respectively for breast cancer diagnosis. Conclusion: The current study provides further evidence for contribution of SOCS genes in breast cancer. Keywords: Suppressor of cytokine signaling, Breast cancer, Expression Introduction MCF-7 and HCC1937, two cell lines that are regarded The suppressor of cytokine signaling (SOCS) family of as prototypic breast cancer cell types. Moreover, they proteins have been recognized as potent inhibitors of have demonstrated responsiveness of SOCS1 and the cytokine-activated Janus kinase/signal transducers SOCS3 promoters to regulation by cytokine or growth and activators of transcription (JAK/STAT) signaling factor signals in spite of hypermethylation state of pathway through which they also suppress cytokine these promoters in these two cell lines [6]. -
Structural Insights Into Substrate Recognition by the SOCS2 E3 Ubiquitin Ligase
bioRxiv preprint doi: https://doi.org/10.1101/470187; this version posted March 15, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 1 Title 2 Structural insights into substrate recognition by the SOCS2 E3 ubiquitin ligase 3 4 Authors 5 Wei-Wei Kung*, Sarath Ramachandran*, Nikolai Makukhin*, Elvira Bruno, Alessio Ciulli 6 *These authors contributed equally to this work 7 8 Address 9 Division of Biological Chemistry and Drug Discovery, School of Life Sciences, University of 10 Dundee, James Black Centre, Dow Street, Dundee, DD1 5EH, United Kingdom 11 12 Abstract 13 The suppressor of cytokine signaling 2 (SOCS2) acts as substrate recognition subunit of a 14 Cullin5 E3 ubiquitin ligase complex. SOCS2 binds to phosphotyrosine-modified epitopes 15 as degrons for ubiquitination and proteasomal degradation, yet the molecular basis of 16 substrate recognition has remained elusive. We solved co-crystal structures of SOCS2- 17 ElonginB-ElonginC in complex with phosphorylated peptides from substrates growth 18 hormone receptor (GHR-pY595) and erythropoietin receptor (EpoR-pY426) at 1.98 Å and 19 2.69 Å, respectively. Both peptides bind in an extended conformation recapitulating the 20 canonical SH2 domain-pY pose, yet capture different conformations of the EF loop via 21 specific hydrophobic interactions. The flexible BG loop, for the first time fully defined in the 22 electron density, does not contact the substrate degrons directly. Cancer-associated SNPs 23 located around the pY pocket weaken substrate-binding affinity in biophysical assays. -
The Emerging Role of Suppressors of Cytokine Signaling (SOCS) in the Development and Progression of Leukemia
cancers Review The Emerging Role of Suppressors of Cytokine Signaling (SOCS) in the Development and Progression of Leukemia Esra’a Keewan 1,2 and Ksenia Matlawska-Wasowska 1,2,* 1 Department of Pediatrics, Division of Hematology and Oncology, University of New Mexico Health Sciences Center, Albuquerque, NM 87131, USA; [email protected] 2 Comprehensive Cancer Center, University of New Mexico, Albuquerque, NM 87131, USA * Correspondence: [email protected]; Tel.: +1-505-272-6177 Simple Summary: The suppressors of cytokine signaling (SOCS) are known cytokine-inducible negative regulators of JAK/STAT and other cell signaling pathways. Deregulation of SOCS expression is linked to various tumor types and inflammatory diseases. While SOCS play a crucial role in the regulation of immune cell function, their roles in hematological malignancies have not been elucidated thus far. In this review, we summarize the current knowledge on the roles of SOCS in leukemia development and progression. We delineate the paradoxical activities of SOCS in different leukemia types and the regulatory mechanisms underlying SOCS deregulation in leukemia. Lastly, we discuss the possible implications of SOCS deregulation for leukemia diagnosis and prognosis. This paper provides new insights into the roles of SOCS in the pathobiology of leukemia and leukemia research. Abstract: Cytokines are pleiotropic signaling molecules that execute an essential role in cell-to-cell communication through binding to cell surface receptors. Receptor binding activates intracellular Citation: Keewan, E.; signaling cascades in the target cell that bring about a wide range of cellular responses, including Matlawska-Wasowska, K. The induction of cell proliferation, migration, differentiation, and apoptosis. -
Potential Implications for SOCS in Chronic Wound Healing
INTERNATIONAL JOURNAL OF MOLECULAR MEDICINE 38: 1349-1358, 2016 Expression of the SOCS family in human chronic wound tissues: Potential implications for SOCS in chronic wound healing YI FENG1, ANDREW J. SANDERS1, FIONA RUGE1,2, CERI-ANN MORRIS2, KEITH G. HARDING2 and WEN G. JIANG1 1Cardiff China Medical Research Collaborative and 2Wound Healing Research Unit, Cardiff University School of Medicine, Cardiff University, Cardiff CF14 4XN, UK Received April 12, 2016; Accepted August 2, 2016 DOI: 10.3892/ijmm.2016.2733 Abstract. Cytokines play important roles in the wound an imbalance between proteinases and their inhibitors, and healing process through various signalling pathways. The the presence of senescent cells is of importance in chronic JAK-STAT pathway is utilised by most cytokines for signal wounds (1). A variety of treatments, such as dressings, appli- transduction and is regulated by a variety of molecules, cation of topical growth factors, autologous skin grafting and including suppressor of cytokine signalling (SOCS) proteins. bioengineered skin equivalents have been applied to deal SOCS are associated with inflammatory diseases and have with certain types of chronic wounds in addition to the basic an impact on cytokines, growth factors and key cell types treatments (1). However, the specific mechanisms of each trea- involved in the wound-healing process. SOCS, a negative ment remain unclear and are under investigation. Therefore, regulator of cytokine signalling, may hold the potential more insight into the mechanisms responsible are required to regulate cytokine-induced signalling in the chronic to gain a better understanding of the wound-healing process. wound-healing process. Wound edge tissues were collected Further clarification of this complex system may contribute to from chronic venous leg ulcer patients and classified as non- the emergence of a prognositc marker to predict the healing healing and healing wounds.