Syllabus of Msc Degree in Botany W.E.F. 2019-20
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Plant Evolution Acetabularia Is a Genus of Green Algae
Botany – Plant Evolution Acetabularia is a genus of green algae, specifically of the Polyphysaceae family. Typically found in subtropical waters, Acetabularia is a single- celled organism, but gigantic in size and complex in form, making it an excellent model organism for studying cell biology. The name, Acetabularia, derives from the Latin word acetabulum, a broad, shallow cup used for dipping bread; the upturned cap of Acetabularia resembles such a cup. For this reason, it is also sometimes called mermaid's wineglass.[6] Acetabularia was the first demonstration that genes are encoded by DNA in eukaryotes. Cladophora is a genus of reticulated filamentous Ulvophyceae (green algae). The genus Cladophora contains many species that are very hard to tell apart and classify, mainly because of the great variation in their appearances, which is affected by habitat, age and environmental conditions. Unlike Spirogyra the filaments of Cladophora branch and it doesn't undergo conjugation. They have swimming gametes instead. There are two multicellular stages in its life cycle - a haploid gametophyte and a diploid sporophyte - which look highly similar. The only way to tell the two stages apart is to either count their chromosomes, or examine their offspring. The haploid gametophyte produces haploid gametes by mitosis and the diploid sporophyte produces haploid spores by meiosis. The only visible difference between the gametes and spores of Cladophora is that the gametes have two flagella and the spores have four. Cladophora is an invahsive species damaging the fishing industry and shoreline property values along the Great Lakes in the United States Chara species are multicellular and superficially resemble land plants because of stem-like and leaf-like structures. -
Plate. Acetabularia Schenckii
Training in Tropical Taxonomy 9-23 July, 2008 Tropical Field Phycology Workshop Field Guide to Common Marine Algae of the Bocas del Toro Area Margarita Rosa Albis Salas David Wilson Freshwater Jesse Alden Anna Fricke Olga Maria Camacho Hadad Kevin Miklasz Rachel Collin Andrea Eugenia Planas Orellana Martha Cecilia Díaz Ruiz Jimena Samper Villareal Amy Driskell Liz Sargent Cindy Fernández García Thomas Sauvage Ryan Fikes Samantha Schmitt Suzanne Fredericq Brian Wysor From July 9th-23rd, 2008, 11 graduate and 2 undergraduate students representing 6 countries (Colombia, Costa Rica, El Salvador, Germany, France and the US) participated in a 15-day Marine Science Network-sponsored workshop on Tropical Field Phycology. The students and instructors (Drs. Brian Wysor, Roger Williams University; Wilson Freshwater, University of North Carolina at Wilmington; Suzanne Fredericq, University of Louisiana at Lafayette) worked synergistically with the Smithsonian Institution's DNA Barcode initiative. As part of the Bocas Research Station's Training in Tropical Taxonomy program, lecture material included discussions of the current taxonomy of marine macroalgae; an overview and recent assessment of the diagnostic vegetative and reproductive morphological characters that differentiate orders, families, genera and species; and applications of molecular tools to pertinent questions in systematics. Instructors and students collected multiple samples of over 200 algal species by SCUBA diving, snorkeling and intertidal surveys. As part of the training in tropical taxonomy, many of these samples were used by the students to create a guide to the common seaweeds of the Bocas del Toro region. Herbarium specimens will be contributed to the Bocas station's reference collection and the University of Panama Herbarium. -
The Umbrella Algae's Crazy Caps
Flashback_Cell Biology The umbrella algae’s crazy caps Acetabularia is several centimeters long – and consists of a single cell. Joachim Hämmerling from the Kaiser Wilhelm Institute for Biology in Berlin-Dahlem and Hans-Georg Schweiger from the Max Planck Institute for Cell Biology in Ladenburg dedicated most of their research life to the umbrella algae. One of their goals was to find out about the role of the nucleus. TEXT ELKE MAIER Berlin-Dahlem in 1931. It was a rather is regenerated time and time again. peculiar little plant that the biolo- The nucleus can be isolated and gist Joachim Hämmerling was con- transferred into another Acetabu- templating. It did not really look like laria fragment, even a foreign one, a plant at all, but more like an um- without losing its functionality. The brella or a small mushroom. A thin little plant was the perfect model stalk the length of a finger was organism to tackle fundamental equipped with a flat, ribbed cap on questions of cell biology. one end, and a root-like holdfast on In order to find out more about the other end which the plant used the function of the nucleus, Häm- to anchor itself to the substrate in merling removed the nucleus of a the surf zone of the sea. young specimen that had not yet Hämmerling’s object of study formed a cap. And lo and behold: was a type of umbrella algae known against all expectations the plant as Acetabularia mediterranea. From a Pioneers of cell biology: Joachim Hämmerling (left) did not die – quite the contrary. -
H+-Pumping Rhodopsin from the Marine Alga Acetabularia
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Biophysical Journal Volume 91 August 2006 1471–1479 1471 H1-Pumping Rhodopsin from the Marine Alga Acetabularia Satoshi P. Tsunoda,* David Ewers,y Sabrina Gazzarrini,z Anna Moroni,z Dietrich Gradmann,y and Peter Hegemann* *Experimentelle Biophysik, Fachbereich fu¨r Biologie, Humboldt-Universita¨t zu Berlin, 10115 Berlin, Germany; yA.-v.-Haller-Institut der Universita¨t, 37073 Go¨ttingen, Germany; and zDipartimento di Biologia and Consiglio Nazionale delle Ricerche Istituto di Biofisica, Universita` degli Studi di Milano, 20133 Milan, Italy ABSTRACT An opsin-encoding cDNA was cloned from the marine alga Acetabularia acetabulum. The cDNA was expressed in Xenopus oocytes into functional Acetabularia rhodopsin (AR) mediating H1 carried outward photocurrents of up to 1.2 mA with an action spectrum maximum at 518 nm (AR518). AR is the first ion-pumping rhodopsin found in a plant organism. Steady- state photocurrents of AR are always positive and rise sigmoidally from negative to positive transmembrane voltages. Numerous kinetic details (amplitudes and time constants), including voltage-dependent recovery of the dark state after light-off, are documented with respect to their sensitivities to light, internal and external pH, and the transmembrane voltage. The results are analyzed by enzyme kinetic formalisms using a simplified version of the known photocycle of bacteriorhodopsin (BR). Blue- 1 light causes a shunt of the photocycle under H reuptake from the extracellular side. Similarities and differences of AR with BR are pointed out. This detailed electrophysiological characterization highlights voltage dependencies in catalytic membrane processes of this eukaryotic, H1-pumping rhodopsin and of microbial-type rhodopsins in general. -
BMC Evolutionary Biology Biomed Central
BMC Evolutionary Biology BioMed Central Research article Open Access Complex distribution of EFL and EF-1α proteins in the green algal lineage Geoffrey P Noble, Matthew B Rogers and Patrick J Keeling* Address: Canadian Institute for Advanced Research, Department of Botany, University of British Columbia, 3529-6270 University Boulevard, Vancouver, BC V6T 1Z4, Canada Email: Geoffrey P Noble - [email protected]; Matthew B Rogers - [email protected]; Patrick J Keeling* - [email protected] * Corresponding author Published: 23 May 2007 Received: 5 February 2007 Accepted: 23 May 2007 BMC Evolutionary Biology 2007, 7:82 doi:10.1186/1471-2148-7-82 This article is available from: http://www.biomedcentral.com/1471-2148/7/82 © 2007 Noble et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Abstract Background: EFL (or elongation factor-like) is a member of the translation superfamily of GTPase proteins. It is restricted to eukaryotes, where it is found in a punctate distribution that is almost mutually exclusive with elongation factor-1 alpha (EF-1α). EF-1α is a core translation factor previously thought to be essential in eukaryotes, so its relationship to EFL has prompted the suggestion that EFL has spread by horizontal or lateral gene transfer (HGT or LGT) and replaced EF-1α multiple times. Among green algae, trebouxiophyceans and chlorophyceans have EFL, but the ulvophycean Acetabularia and the sister group to green algae, land plants, have EF-1α. -
Acetabularia Acetabulum
Plant Cell Physiol. 48(1): 122–133 (2007) doi:10.1093/pcp/pcl053, available online at www.pcp.oxfordjournals.org ß The Author 2006. Published by Oxford University Press on behalf of Japanese Society of Plant Physiologists. All rights reserved. For permissions, please email: [email protected] Spectroscopic and Biochemical Analysis of Regions of the Cell Wall of the Unicellular ‘Mannan Weed’, Acetabularia acetabulum Erin K. Dunn 1, 5, Douglas A. Shoue 2, 5, Xuemei Huang 3, Raymond E. Kline 4, Alex L. MacKay 3, Nicholas C. Carpita 2, Iain E.P. Taylor 4 and Dina F. Mandoli 1,Ã 1 Department of Biology, Center for Developmental Biology & Institute for Stem Cell and Regenerative Medicine, Box 35325, University of Washington, Seattle, WA 98195-5325, USA 2 Department of Botany and Plant Pathology, Purdue University, W. Lafayette, Indiana 47907-2054, USA 3 Department of Physics and Astronomy, University of British Columbia, Vancouver, BC, Canada V6T 1Z1 4 Department of Botany, University of British Columbia, Vancouver, BC, Canada V6T 1Z4 Downloaded from https://academic.oup.com/pcp/article/48/1/122/2469303 by guest on 29 September 2021 Although the Dasycladalean alga Acetabularia acetabulum Introduction has long been known to contain mannan-rich walls, it is not known to what extent wall composition varies as a function of The Mediterranean coralline alga Acetabularia the elaborate cellular differentiation of this cell, nor has it acetabulum (previously classified as A. mediterranea)isa been determined what other polysaccharides -
Session 2019-20
S.N. CONTENTS Page 1. Taxonomy 1 2. H Taxonomy 10 3. K M 14 4. K Protista 32 5. K Fungi 37 6. P Kngdom 53 A. A 53 B. B 62 C. Pteridophyta 66 D. Gymnosperms 71 7. Eerci-I (Cceptua Qti) 83 RLD 8. Eer-II (Previou Y Qestio)2019-20100 9. Eer-III (Analytica Q) 118 10. Eer-IV (Asser & R) 128 11. Virus 132 12. Lchen 135 13. MrrhizaSession 137 14. T World 138 E ALLEN NEET SYLLABUS DIVERSITY IN LIVING WORLD : What is living? ; Biodiversity; Need for classification; Three domains of life; Taxonomy & Systematics; Concept of species and taxonomical hierarchy; Binomial nomenclature; Tools for study of Taxonomy – Museums, Zoos, Herbaria, Botanical gardens. Five kingdom classification; salient features and classification of Monera; Protista and Fungi into major groups; Lichens; Viruses and Viroids. Salient features and classification of plants into major groups-Algae, Bryophytes, Pteridophytes, Gymnosperms and Angiosperms (three to five salient and distinguishing features and at least two examples of each category); Angiosperms- classification up to class, characteristic features and examples). Aristotle (384-322 BC) He was a Greek philosopher and scientist born in the city of Stagira, Chalkidice of classical Greece. His father died when Aristotle was a child. At eighteen, he joined Plato's Academy in Athens and remained there until the age of thirty seven (c.347 BC). His writings cover many subjects including physics, biology, zoology, metaphysics, poetry, politics and government. Shortly after Plato died, Aristotle left Athens and, at the request of Philip of Macedon, tutored Alexander the Great. Aristotle was the first genuine scientist in history and every scientist is in his debt.He is regarded as father of biology and zoology. -
Genome of an Acetabularia Mediterranea Strain (Southern Blot/Molecular Cloning/Dasycladaceae/Evolution) MARTIN J
Proc. Natl. Acad. Sci. USA Vol. 82, pp. 1706-1710, March 1985 Cell Biology Tandemly repeated nonribosomal DNA sequences in the chloroplast genome of an Acetabularia mediterranea strain (Southern blot/molecular cloning/Dasycladaceae/evolution) MARTIN J. TYMMS AND HANS-GEORG SCHWEIGER Max-Planck-Institut fur Zellbiologie, D-6802 Ladenburg, Federal Republic of Germany Communicated by Philip Siekevitz, October 29, 1984 ABSTRACT A purified chloroplast fraction was prepared the life cycle and that are not homologous to heterologous from caps of the giant unicellular green alga Acetabularia probes for ribosomal RNA genes. mediterranea (strain 17). High molecular weight DNA obtained from these chloroplasts contains at least five copies of a MATERIALS AND METHODS 10-kilobase-pair (kbp) sequence tandemly arranged. This Preparation of Chloroplasts. A. mediterranea was grown in unique sequence is present in DNA from chloroplasts of all Muller's medium as described (for references, see ref. 9). stages of the life cycle examined. A chloroplast rDNA clone Cells of three different stages, 1 cm long, 3.5 cm long (i.e., from mustard hybridized with some restriction fragments just prior to cap formation), and fully developed caps (9) from Acetabularia chloroplast DNA but not with the repeated were studied. sequence. An 8-kbp EcoRI-.Pst I fragment of the repeated Caps from A. mediterranea cells were harvested prior to sequence was cloned into pBR322 and used as a hybridization the formation of secondary nuclei. Five-thousand caps probe. No homology was found between the cloned 8-kbp ('100 g) were homogenized in a blender fitted with razor sequence and chloroplast DNA from related species blades on a vertical shaft in 1 liter of ice-cold buffer A Acetabularia crenulata or chloroplast DNA from spinach. -
Caulerpa Taxifolia
Semiosis aspects of ecosystems of the invasive Caulerpa taxifolia Urbino (Italia, 2005) Contributors Maricela YIP & Pierre MADL http://www.sbg.ac.at/ipk/avstudio/pierofun/ct/caulerpa.htm 0 Intro Properties Semiosis Analysis Conclusion What is Caulerpa taxifolia ? (1/2) Taxonomy: C.taxifolia is a marine plant grouped into Division: Chlorophyta Class: Chlorophyceae Order: Bryopsidales Family: Caulerpaceae Genus: Caulerpa (J.V.F. Lamouroux, 1809) Species: Caulerpa taxifolia (Vahl) C.Ag., 1817) 05-07-17 Yip / Madl 1 i) The Chlorophyta (green algae) groups unicellular or multicellular photosynthetic organisms characterized by the presence of chlorophyll a and b, as well as various carotenoids. The carbohydrate food reserve is starch, which is stored in plastids. There are about 7000 known species. ii) The Ulvophyceae is one of the 3 classes currently recognized in the chlorophyte lineage, the others being Chlorophyceae and Trebouxiophyceae (formerly Pleurastrophyceae) and is made up of approximately 1100 species clustered among 100 genera. Most of which are found in temperate and tropical marine environments, and the majority of green "seaweeds", including well-known species of besides Ulva and Acetabularia besides Caulerpa, are placed in this class as well. Conversely, the Chlorophyceae and Trebouxiophyceae, and the Streptophytes, consist almost entirely of non-marine organisms. In classifications based on morphology and ultrastructure, the Ulvophyceae have been separated from other chlorophytes mostly on the basis of characters associated with mitosis, cytokinesis, and the flagellar apparatus of zoospores and gametes. In molecular analyses, however, the relationships among these three classes are less clear. Moreover, the "siphonous" orders of Ulvophyceae (Cladophorales, Dasycladales, Caulerpales) are difficult to resolve vis- à-vis each other and with other Ulvophyceae (orders Ulotrichales and Ulvales); phylogenetic trees based on single gene sequences reveal long branch lengths between "siphonous" sequences and those of other chlorophytes. -
Compartmentalization of Mrnas in the Giant, Unicellular Green Algae
bioRxiv preprint doi: https://doi.org/10.1101/2020.09.18.303206; this version posted September 18, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Compartmentalization of mRNAs in the giant, 2 unicellular green algae Acetabularia acetabulum 3 4 Authors 5 Ina J. Andresen1, Russell J. S. Orr2, Kamran Shalchian-Tabrizi3, Jon Bråte1* 6 7 Address 8 1: Section for Genetics and Evolutionary Biology, Department of Biosciences, University of 9 Oslo, Kristine Bonnevies Hus, Blindernveien 31, 0316 Oslo, Norway. 10 2: Natural History Museum, University of Oslo, Oslo, Norway 11 3: Centre for Epigenetics, Development and Evolution, Department of Biosciences, University 12 of Oslo, Kristine Bonnevies Hus, Blindernveien 31, 0316 Oslo, Norway. 13 14 *Corresponding author 15 Jon Bråte, [email protected] 16 17 Keywords 18 Acetabularia acetabulum, Dasycladales, UMI, STL, compartmentalization, single-cell, mRNA. 19 20 Abstract 21 Acetabularia acetabulum is a single-celled green alga previously used as a model species for 22 studying the role of the nucleus in cell development and morphogenesis. The highly elongated 23 cell, which stretches several centimeters, harbors a single nucleus located in the basal end. 24 Although A. acetabulum historically has been an important model in cell biology, almost 25 nothing is known about its gene content, or how gene products are distributed in the cell. To 26 study the composition and distribution of mRNAs in A. -
Dasycladales Morphogenesis: the Pattern Formation Viewpoint
Dasycladales Morphogenesis: The Pattern Formation Viewpoint By Jacques Dumais B.Sc. (Biology) Universite de Sherbrooke, 1993 A THESIS SUBMITTED IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF MASTER IN SCIENCE in THE FACULTY OF GRADUATE STUDIES DEPARTMENT OF BOTANY We accept this thesis as conforming to the required standard THE UNIVERSITY OF BRITISH COLUMBIA April 1996 © Jacques Dumais, 1996 In presenting this thesis in partial fulfilment of the requirements for an advanced degree at the University of British Columbia, I agree that the Library shall make it freely available for reference and study. I further agree that permission for extensive copying of this thesis for scholarly purposes may be granted by the head of my department or by his or her representatives. It is understood that copying or publication of this thesis for financial gain shall not be allowed without my written permission. Department of l^OlXlrnu The University of British Columbia Vancouver, Canada Date Apl fl3^ , % DE-6 (2/88) Abstract The Dasycladalian algae produce diverse whorled structures, among which the best-known are the reproductive whorl (cap) and the vegetative whorls (hair whorls) of Acetabularia acetabulum. The origin of these structures is addressed in terms of three pattern forming mechanisms proposed to explain whorl formation. The mechanisms involve either: mechanical buckling of the cell wall, reaction-diffusion of morphogens along the cell membrane, or Ca2+-cytoskeleton mechano- chemical interactions in the cytosol. They are described and their idiosyncrasies underlined to provide a ground to test them experimentally. It is also suggested that the closely regulated spacing between the elements of a whorl is a key component of such a test. -
Dna in the Chloroplasts of Acetabularia Mediterranea
University of New Hampshire University of New Hampshire Scholars' Repository Doctoral Dissertations Student Scholarship Spring 1965 DNA IN THE CHLOROPLASTS OF ACETABULARIA MEDITERRANEA CARL JOSEPH CHAPMAN Follow this and additional works at: https://scholars.unh.edu/dissertation Recommended Citation CHAPMAN, CARL JOSEPH, "DNA IN THE CHLOROPLASTS OF ACETABULARIA MEDITERRANEA" (1965). Doctoral Dissertations. 809. https://scholars.unh.edu/dissertation/809 This Dissertation is brought to you for free and open access by the Student Scholarship at University of New Hampshire Scholars' Repository. It has been accepted for inclusion in Doctoral Dissertations by an authorized administrator of University of New Hampshire Scholars' Repository. For more information, please contact [email protected]. This dissertation has been 65—9082 microfilmed exactly as received CHAPMAN, Carl Joseph, 1939- DNA IN THE CHLOROPLASTS OF ACETABULARIA MEDITE RRANEA. University of New Hampshire, Ph.D., 1965 Botany University Microfilms, Inc., Ann Arbor, Michigan ENA IN THE CHLOROPLASTS OF ACETABULARIA MEDITERRANEA BY CARL JOSEPH CHAPMAN B. S., University of New Hampshire, 1961 A THESIS Submitted to the University of New Hampshire In Partial Fulfillment of The Requirements for the Degree of Doctor of Philosophy Graduate School Department of Botany June, 1965 This thesis has "been examined and approved. (RA a -»—■. / S v-y{X/}\AK£j^~h Q l .JI( t f ip ,3 A)ate Acknowledgments I am grateful to Dr. Richard W. Schreiber for his guidance during the planning and research phases of this thesis and for his patience in reviewing the manuscript. I wish to thank Dr. Noel A. Nugent for his assistance in carry ing out some of the technical phases of the research and in culturing the algae.