Organism Life Cycles, Predation, and the Structure of Marine Pelagic Ecosystems
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Intelligent Design, Abiogenesis, and Learning from History: Dennis R
Author Exchange Intelligent Design, Abiogenesis, and Learning from History: Dennis R. Venema A Reply to Meyer Dennis R. Venema Weizsäcker’s book The World View of Physics is still keeping me very busy. It has again brought home to me quite clearly how wrong it is to use God as a stop-gap for the incompleteness of our knowledge. If in fact the frontiers of knowledge are being pushed back (and that is bound to be the case), then God is being pushed back with them, and is therefore continually in retreat. We are to find God in what we know, not in what we don’t know; God wants us to realize his presence, not in unsolved problems but in those that are solved. Dietrich Bonhoeffer1 am thankful for this opportunity to nature, is the result of intelligence. More- reply to Stephen Meyer’s criticisms over, this assertion is proffered as the I 2 of my review of his book Signature logical basis for inferring design for the in the Cell (hereafter Signature). Meyer’s origin of biological information: if infor- critiques of my review fall into two gen- mation only ever arises from intelli- eral categories. First, he claims I mistook gence, then the mere presence of Signature for an argument against bio- information demonstrates design. A few logical evolution, rendering several of examples from Signature make the point my arguments superfluous. Secondly, easily: Meyer asserts that I have failed to refute … historical scientists can show that his thesis by not providing a “causally a presently acting cause must have adequate alternative explanation” for the been present in the past because the origin of life in that the few relevant cri- proposed candidate is the only known tiques I do provide are “deeply flawed.” cause of the effect in question. -
Predators As Agents of Selection and Diversification
diversity Review Predators as Agents of Selection and Diversification Jerald B. Johnson * and Mark C. Belk Evolutionary Ecology Laboratories, Department of Biology, Brigham Young University, Provo, UT 84602, USA; [email protected] * Correspondence: [email protected]; Tel.: +1-801-422-4502 Received: 6 October 2020; Accepted: 29 October 2020; Published: 31 October 2020 Abstract: Predation is ubiquitous in nature and can be an important component of both ecological and evolutionary interactions. One of the most striking features of predators is how often they cause evolutionary diversification in natural systems. Here, we review several ways that this can occur, exploring empirical evidence and suggesting promising areas for future work. We also introduce several papers recently accepted in Diversity that demonstrate just how important and varied predation can be as an agent of natural selection. We conclude that there is still much to be done in this field, especially in areas where multiple predator species prey upon common prey, in certain taxonomic groups where we still know very little, and in an overall effort to actually quantify mortality rates and the strength of natural selection in the wild. Keywords: adaptation; mortality rates; natural selection; predation; prey 1. Introduction In the history of life, a key evolutionary innovation was the ability of some organisms to acquire energy and nutrients by killing and consuming other organisms [1–3]. This phenomenon of predation has evolved independently, multiple times across all known major lineages of life, both extinct and extant [1,2,4]. Quite simply, predators are ubiquitous agents of natural selection. Not surprisingly, prey species have evolved a variety of traits to avoid predation, including traits to avoid detection [4–6], to escape from predators [4,7], to withstand harm from attack [4], to deter predators [4,8], and to confuse or deceive predators [4,8]. -
Effects of Human Disturbance on Terrestrial Apex Predators
diversity Review Effects of Human Disturbance on Terrestrial Apex Predators Andrés Ordiz 1,2,* , Malin Aronsson 1,3, Jens Persson 1 , Ole-Gunnar Støen 4, Jon E. Swenson 2 and Jonas Kindberg 4,5 1 Grimsö Wildlife Research Station, Department of Ecology, Swedish University of Agricultural Sciences, SE-730 91 Riddarhyttan, Sweden; [email protected] (M.A.); [email protected] (J.P.) 2 Faculty of Environmental Sciences and Natural Resource Management, Norwegian University of Life Sciences, Postbox 5003, NO-1432 Ås, Norway; [email protected] 3 Department of Zoology, Stockholm University, SE-10691 Stockholm, Sweden 4 Norwegian Institute for Nature Research, NO-7485 Trondheim, Norway; [email protected] (O.-G.S.); [email protected] (J.K.) 5 Department of Wildlife, Fish, and Environmental Studies, Swedish University of Agricultural Sciences, SE-901 83 Umeå, Sweden * Correspondence: [email protected] Abstract: The effects of human disturbance spread over virtually all ecosystems and ecological communities on Earth. In this review, we focus on the effects of human disturbance on terrestrial apex predators. We summarize their ecological role in nature and how they respond to different sources of human disturbance. Apex predators control their prey and smaller predators numerically and via behavioral changes to avoid predation risk, which in turn can affect lower trophic levels. Crucially, reducing population numbers and triggering behavioral responses are also the effects that human disturbance causes to apex predators, which may in turn influence their ecological role. Some populations continue to be at the brink of extinction, but others are partially recovering former ranges, via natural recolonization and through reintroductions. -
The Hidden Kingdom
INTRODUCTION Fungi—The Hidden Kingdom OBJECTIVE • To provide students with basic knowledge about fungi Activity 0.1 BACKGROUND INFORMATION The following text provides an introduction to the fungi. It is written with the intention of sparking curiosity about this GRADES fascinating biological kingdom. 4-6 with a K-3 adaptation TEACHER INSTRUCTIONS TYPE OF ACTIVITY 1. With your class, brainstorm everything you know about fungi. Teacher read/comprehension 2. For younger students, hand out the question sheet before you begin the teacher read and have them follow along and MATERIALS answer the questions as you read. • copies of page 11 3. For older students, inform them that they will be given a • pencils brainteaser quiz (that is not for evaluation) after you finish reading the text. VOCABULARY 4. The class can work on the questions with partners or in groups bioremediation and then go over the answers as a class. Discuss any chitin particularly interesting facts and encourage further fungi independent research. habitat hyphae K-3 ADAPTATION kingdom 1. To introduce younger students to fungi, you can make a KWL lichens chart either as a class or individually. A KWL chart is divided moulds into three parts. The first tells what a student KNOWS (K) mushrooms about a subject before it is studied in class. The second part mycelium tells what the student WANTS (W) to know about that subject. mycorrhizas The third part tells what the child LEARNED (L) after studying nematodes that subject. parasitic fungi 2. Share some of the fascinating fungal facts presented in the photosynthesis “Fungi—The Hidden Kingdom” text with your students. -
Framing Major Prebiotic Transitions As Stages of Protocell Development: Three Challenges for Origins-Of-Life Research
Framing major prebiotic transitions as stages of protocell development: three challenges for origins-of-life research Ben Shirt-Ediss1, Sara Murillo-Sánchez2,3 and Kepa Ruiz-Mirazo*2,3 Commentary Open Access Address: Beilstein J. Org. Chem. 2017, 13, 1388–1395. 1Interdisciplinary Computing and Complex BioSystems Group, doi:10.3762/bjoc.13.135 University of Newcastle, UK, 2Dept. Logic and Philosophy of Science, University of the Basque Country, Spain and 3Biofisika Institute Received: 16 February 2017 (CSIC, UPV-EHU), Spain Accepted: 27 June 2017 Published: 13 July 2017 Email: Kepa Ruiz-Mirazo* - [email protected] This article is part of the Thematic Series "From prebiotic chemistry to molecular evolution". * Corresponding author Guest Editor: L. Cronin Keywords: functional integration; origins of life; prebiotic evolution; protocells © 2017 Shirt-Ediss et al.; licensee Beilstein-Institut. License and terms: see end of document. Abstract Conceiving the process of biogenesis as the evolutionary development of highly dynamic and integrated protocell populations provides the most appropriate framework to address the difficult problem of how prebiotic chemistry bridged the gap to full-fledged living organisms on the early Earth. In this contribution we briefly discuss the implications of taking dynamic, functionally inte- grated protocell systems (rather than complex reaction networks in bulk solution, sets of artificially evolvable replicating molecules, or even these same replicating molecules encapsulated in passive compartments) -
A Review of Planktivorous Fishes: Their Evolution, Feeding Behaviours, Selectivities, and Impacts
Hydrobiologia 146: 97-167 (1987) 97 0 Dr W. Junk Publishers, Dordrecht - Printed in the Netherlands A review of planktivorous fishes: Their evolution, feeding behaviours, selectivities, and impacts I Xavier Lazzaro ORSTOM (Institut Français de Recherche Scientifique pour le Développement eri Coopération), 213, rue Lu Fayette, 75480 Paris Cedex IO, France Present address: Laboratorio de Limrzologia, Centro de Recursos Hidricob e Ecologia Aplicada, Departamento de Hidraulica e Sarzeamento, Universidade de São Paulo, AV,DI: Carlos Botelho, 1465, São Carlos, Sï? 13560, Brazil t’ Mail address: CI? 337, São Carlos, SI? 13560, Brazil Keywords: planktivorous fish, feeding behaviours, feeding selectivities, electivity indices, fish-plankton interactions, predator-prey models Mots clés: poissons planctophages, comportements alimentaires, sélectivités alimentaires, indices d’électivité, interactions poissons-pltpcton, modèles prédateurs-proies I Résumé La vision classique des limnologistes fut de considérer les interactions cntre les composants des écosystè- mes lacustres comme un flux d’influence unidirectionnel des sels nutritifs vers le phytoplancton, le zoo- plancton, et finalement les poissons, par l’intermédiaire de processus de contrôle successivement physiqucs, chimiques, puis biologiques (StraSkraba, 1967). L‘effet exercé par les poissons plaiictophages sur les commu- nautés zoo- et phytoplanctoniques ne fut reconnu qu’à partir des travaux de HrbáEek et al. (1961), HrbAEek (1962), Brooks & Dodson (1965), et StraSkraba (1965). Ces auteurs montrèrent (1) que dans les étangs et lacs en présence de poissons planctophages prédateurs visuels. les conimuiiautés‘zooplanctoniques étaient com- posées d’espèces de plus petites tailles que celles présentes dans les milieux dépourvus de planctophages et, (2) que les communautés zooplanctoniques résultantes, composées d’espèces de petites tailles, influençaient les communautés phytoplanctoniques. -
Can More K-Selected Species Be Better Invaders?
Diversity and Distributions, (Diversity Distrib.) (2007) 13, 535–543 Blackwell Publishing Ltd BIODIVERSITY Can more K-selected species be better RESEARCH invaders? A case study of fruit flies in La Réunion Pierre-François Duyck1*, Patrice David2 and Serge Quilici1 1UMR 53 Ӷ Peuplements Végétaux et ABSTRACT Bio-agresseurs en Milieu Tropical ӷ CIRAD Invasive species are often said to be r-selected. However, invaders must sometimes Pôle de Protection des Plantes (3P), 7 chemin de l’IRAT, 97410 St Pierre, La Réunion, France, compete with related resident species. In this case invaders should present combina- 2UMR 5175, CNRS Centre d’Ecologie tions of life-history traits that give them higher competitive ability than residents, Fonctionnelle et Evolutive (CEFE), 1919 route de even at the expense of lower colonization ability. We test this prediction by compar- Mende, 34293 Montpellier Cedex, France ing life-history traits among four fruit fly species, one endemic and three successive invaders, in La Réunion Island. Recent invaders tend to produce fewer, but larger, juveniles, delay the onset but increase the duration of reproduction, survive longer, and senesce more slowly than earlier ones. These traits are associated with higher ranks in a competitive hierarchy established in a previous study. However, the endemic species, now nearly extinct in the island, is inferior to the other three with respect to both competition and colonization traits, violating the trade-off assumption. Our results overall suggest that the key traits for invasion in this system were those that *Correspondence: Pierre-François Duyck, favoured competition rather than colonization. CIRAD 3P, 7, chemin de l’IRAT, 97410, Keywords St Pierre, La Réunion Island, France. -
What Happened When Wolves Were Reintroduced to Yellowstone Park?
Trophic Cascades: What Happened When Wolves Were Reintroduced to Yellowstone Park? Lesson Question How did the reintroduction of wolves into Yellowstone Park affect the other animals and plants in the ecosystem? Lesson Tasks Students analyze data to determine the effect of wolves on Yellowstone’s elk population, on the plants that elk graze on, and on the animals that compete with elk for food. They write a report describing how the reintroduction of wolves has created a trophic cascade—not just a few direct changes in one food chain, but a series of indirect changes throughout the food web. Standards • HS-LS2-2 Ecosystems: Interactions, Energy, and Dynamics NGSS Science and Engineering Practices • Constructing Explanations and Designing Solutions • Engaging in Argument from Evidence • Evaluate the claims, evidence, and reasoning behind currently accepted explanations or solutions to determine the merits of arguments. NGSS Disciplinary Core Ideas • LS2.C: Ecosystem Dynamics, Functioning and Resilience • ETS1.B: Developing Possible Solutions Crosscutting Concepts • Stability and Change, Patterns Connections to Nature of Science • Scientific Knowledge is open to revision in light of new evidence. • Most scientific Knowledge is quite durable, but is, in principle, subject to change based on new evidence and/or reinterpretation of existing evidence. Trophic Cascades: What Happened When Wolves Were Reintroduced to Yellowstone Park? TABLE OF CONTENTS OVERVIEW ........................................................... 3 INVESTIGATION ............................................... -
The Concept of Organism, a Historical and Conceptual Critique
Do organisms have an ontological status? Charles T. Wolfe Unit for History and Philosophy of Science University of Sydney [email protected] forthcoming in History and Philosophy of the Life Sciences 32:2-3 (2010) Abstract The category of „organism‟ has an ambiguous status: is it scientific or is it philosophical? Or, if one looks at it from within the relatively recent field or sub-field of philosophy of biology, is it a central, or at least legitimate category therein, or should it be dispensed with? In any case, it has long served as a kind of scientific “bolstering” for a philosophical train of argument which seeks to refute the “mechanistic” or “reductionist” trend, which has been perceived as dominant since the 17th century, whether in the case of Stahlian animism, Leibnizian monadology, the neo-vitalism of Hans Driesch, or, lastly, of the “phenomenology of organic life” in the 20th century, with authors such as Kurt Goldstein, Maurice Merleau-Ponty, and Georges Canguilhem. In this paper I try to reconstruct some of the main interpretive „stages‟ or „layers‟ of the concept of organism in order to critically evaluate it. How might „organism‟ be a useful concept if one rules out the excesses of „organismic‟ biology and metaphysics? Varieties of instrumentalism and what I call the „projective‟ concept of organism are appealing, but perhaps ultimately unsatisfying. 1. What is an organism? There have been a variety of answers to this question, not just in the sense of different definitions (an organism is a biological individual; it is a living being, or at least the difference between a living organism and a dead organism is somehow significant in a way that does not seem to make sense for other sorts of entities, like lamps and chairs; it is a self-organizing, metabolic system; etc.) but more tendentiously, in the 1 sense that philosophers, scientists, „natural philosophers‟ and others have both asserted and denied the existence of organisms. -
Evidence for Ecosystem-Level Trophic Cascade Effects Involving Gulf Menhaden (Brevoortia Patronus) Triggered by the Deepwater Horizon Blowout
Journal of Marine Science and Engineering Article Evidence for Ecosystem-Level Trophic Cascade Effects Involving Gulf Menhaden (Brevoortia patronus) Triggered by the Deepwater Horizon Blowout Jeffrey W. Short 1,*, Christine M. Voss 2, Maria L. Vozzo 2,3 , Vincent Guillory 4, Harold J. Geiger 5, James C. Haney 6 and Charles H. Peterson 2 1 JWS Consulting LLC, 19315 Glacier Highway, Juneau, AK 99801, USA 2 Institute of Marine Sciences, University of North Carolina at Chapel Hill, 3431 Arendell Street, Morehead City, NC 28557, USA; [email protected] (C.M.V.); [email protected] (M.L.V.); [email protected] (C.H.P.) 3 Sydney Institute of Marine Science, Mosman, NSW 2088, Australia 4 Independent Researcher, 296 Levillage Drive, Larose, LA 70373, USA; [email protected] 5 St. Hubert Research Group, 222 Seward, Suite 205, Juneau, AK 99801, USA; [email protected] 6 Terra Mar Applied Sciences LLC, 123 W. Nye Lane, Suite 129, Carson City, NV 89706, USA; [email protected] * Correspondence: [email protected]; Tel.: +1-907-209-3321 Abstract: Unprecedented recruitment of Gulf menhaden (Brevoortia patronus) followed the 2010 Deepwater Horizon blowout (DWH). The foregone consumption of Gulf menhaden, after their many predator species were killed by oiling, increased competition among menhaden for food, resulting in poor physiological conditions and low lipid content during 2011 and 2012. Menhaden sampled Citation: Short, J.W.; Voss, C.M.; for length and weight measurements, beginning in 2011, exhibited the poorest condition around Vozzo, M.L.; Guillory, V.; Geiger, H.J.; Barataria Bay, west of the Mississippi River, where recruitment of the 2010 year class was highest. -
Herbivore Physiological Response to Predation Risk and Implications for Ecosystem Nutrient Dynamics
Herbivore physiological response to predation risk and implications for ecosystem nutrient dynamics Dror Hawlena and Oswald J. Schmitz1 School of Forestry and Environmental Studies, Yale University, New Haven, CT 06511 Communicated by Thomas W. Schoener, University of California, Davis, CA, June 29, 2010 (received for review January 4, 2010) The process of nutrient transfer throughan ecosystem is an important lower the quantity of energy that can be allocated to production determinant of production, food-chain length, and species diversity. (20–23). Consequently, stress-induced constraints on herbivore The general view is that the rate and efficiency of nutrient transfer up production should lower the demand for N-rich proteins (24). the food chain is constrained by herbivore-specific capacity to secure Herbivores also have low capacity to store excess nutrients (24), N-rich compounds for survival and production. Using feeding trials and hence should seek plants with high digestible carbohydrate with artificial food, we show, however, that physiological stress- content to minimize the costs of ingesting and excreting excess N. response of grasshopper herbivores to spider predation risk alters the Such stress-induced shift in nutrient demand may be especially nature of the nutrient constraint. Grasshoppers facing predation risk important in terrestrial systems in which digestible carbohydrate had higher metabolic rates than control grasshoppers. Elevated represents a small fraction of total plant carbohydrate-C, and may metabolism accordingly increased requirements for dietary digestible be limiting even under risk-free conditions (25). Moreover, stress carbohydrate-C to fuel-heightened energy demands. Moreover, di- responses include break down of body proteins to produce glucose gestible carbohydrate-C comprises a small fraction of total plant (i.e., gluconeogenesis) (14), which requires excretion of N-rich tissue-C content, so nutrient transfer between plants and herbivores waste compounds (ammonia or primary amines) (26). -
Interspecific Killing Among Mammalian Carnivores
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Digital.CSIC vol. 153, no. 5 the american naturalist may 1999 Interspeci®c Killing among Mammalian Carnivores F. Palomares1,* and T. M. Caro2,² 1. Department of Applied Biology, EstacioÂn BioloÂgica de DonÄana, thought to act as keystone species in the top-down control CSIC, Avda. MarõÂa Luisa s/n, 41013 Sevilla, Spain; of terrestrial ecosystems (Terborgh and Winter 1980; Ter- 2. Department of Wildlife, Fish, and Conservation Biology and borgh 1992; McLaren and Peterson 1994). One factor af- Center for Population Biology, University of California, Davis, fecting carnivore populations is interspeci®c killing by California 95616 other carnivores (sometimes called intraguild predation; Submitted February 9, 1998; Accepted December 11, 1998 Polis et al. 1989), which has been hypothesized as having direct and indirect effects on population and community structure that may be more complex than the effects of either competition or predation alone (see, e.g., Latham 1952; Rosenzweig 1966; Mech 1970; Polis and Holt 1992; abstract: Interspeci®c killing among mammalian carnivores is Holt and Polis 1997). Currently, there is renewed interest common in nature and accounts for up to 68% of known mortalities in some species. Interactions may be symmetrical (both species kill in intraguild predation from a conservation standpoint each other) or asymmetrical (one species kills the other), and in since top predator removal is thought to release other some interactions adults of one species kill young but not adults of predator populations with consequences for lower trophic the other.