9/17/2021

FlowCam® Publications

If you are interested in obtaining a copy of any of these publications, please contact Yokogawa Fluid Imaging Technologies at [email protected] and we will help you.

Publication Volume Date Authors Title

doi: Jan Xinyue He, Chao Chen, Zili Zhang, Haiyan Hu, Anhui Tan, Temporal and spatial characteristics of harmful algae blooms in the offshore Journal of Applied Remote Sensing 10.1117/1.JRS.16.01200 2022 Zhiyuan Xing waters, China during 1990 to 2019 4

doi: M.N. Müller, G.T. Yogui, A.O. Gálvez, L.G. de Sales Jannuzzi, Aug Cellular accumulation of crude oil compounds reduces the competitive fitness Environmental Pollution 10.1016/j.envpol.2021.1 J.F. de Souza Filho, M. de Jesus Flores Montes, P.A.M. de 2021 of the coral symbiont Symbiodinium glynnii 17938 Castro Melo, S. Neumann-Leitão, E. Zanardi-Lamardo

doi: Aug Whitney Hassett, Julie Zimmerman, Gretchen Rollwagen- An experimental evaluation of the efficacy of imaging flow cytometry Lake and Reservoir Management 10.1080/10402381.2021 2021 Bollens, Stephen Bollens & Timothy D. Counihan (FlowCam) for detecting invasive Dreissened and Corbiculid bivalve veligers .1961176

doi: 10.1038/s41598-021- Aug Dmitry V. Malashenkov, Veronika Dashkova, Kymbat Comparative analysis of freshwater phytoplankton communities in two lakes of Scientific Reports 95223-z 2021 Zhakupova, Ivan A. Vorobjev, Natasha S. Barteneva Burabay National Park using morphological and molecular approaches

A. Neeley, S. Beaulieu, C. Proctor, I. Centinić, J. Futrelle, I.S. doi: Jul Standards and practices for reporting plankton and other particle observations Woods Hole Open Access Server Ramos, H. Sosik, E. Devred, L. Karp-Boss, M. Picheral, N. 10.1575/1912/27377 2021 from images: Technical Manual Poulton, C. Roesler, A. Shepherd

Jul Raphael Gollnisch, Teodor Alling, Maria Stockenreiter, Dag Calcium and pH interaction limits bloom formation and expansion of a nuisance Limnology and Oceanography doi: 10.1002/lno.11896 2021 Ahrén, Magdalena Grabowska, Karin Rengefors microalga

May Tamara J. Layden, Colin T. Kremer, Delaney L. Brubaker, Thermal acclimation influences the growth and toxin production of freshwater Limnology and Oceanography Letters doi: 10.1002/lol2.10197 2021 Maeve A. Kolk, Jessica V. Trout-Haney, David A. Vasseur cyanobacteria

Y. Mirasbekov, A. Zhumakhanova, A. Zhantuyakova, K. Semi-automated classification of colonial Microcystis by FlowCam imaging flow doi: 10.1038/s41598-021- May Sarkytbayev, D.V. Malashenkov, A. Baishulakova, V. Scientific Reports cytometry in mesocosm experiment reveals high heterogeneity during seasonal 88661-2 2021 Dashkova, T.A. Davidson, I.A. Vorobjev, E. Jeppesen, N.S. bloom Barteneva

doi: Arunpandi Nagarathinam, Jyothibabu Retnamma, Jagadeesan Apr Implications of an extensive salt water barrage on the distribution of black clam Oceanologia 10.1016/j.oceano.2021.0 Loganathan, Parthasarathi Singaram, Savitha Mohanan, Albin 2021 in a tropical estuarine system, Southwest coast of India 3.005 Konnakkamannil Jose, Pandiyarajan Rethinam Subramanian

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FlowCam® Publications

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Publication Volume Date Authors Title

doi: Mar Algal Research 10.1016/j.alga.2021.102 P. Otálora, J.L. Guzmán, F.G. Acién, M. Berenguel, A. Reul Microalgae classification based on machine learning techniques 2021 256

Jesús de-los-Ríos-Mérida, Francisco Guerrero, Salvador Arijo, doi: Mar María Muñoz, Inmaculada Álvarez-Manzaneda, Jorge García- Wastewater Discharge through a Stream into a Mediterranean Ramsar Journal of Plankton Research 10.1093/plankt/fbab017 2021 Márquez, Begoña Bautista, Manuel Rendón-Martos, Andreas Wetland: Evaluation and Proposal of a Nature-Based Treatment System Reul Katie E. Marshall, Kathryn M. Anderson, Norah E. M. Brown, doi: Mar James K. Dytnerski, Kelsey L. Flynn, Joey R. Bernhardt, Whole-organism responses to constant temperatures do not predict responses Journal of Plankton Research 10.1093/plankt/fbab017 2021 Cassandra A. Konecny, Helen Gurney-Smith, Christopher D. G. to variable temperatures in the ecosystem engineer Mytilus trossulus Harley

doi: 10.17516/1997- Feb Egor S. Zadereev, Anton V. Drobotov, Tatiana S. Lopatina, Comparison of Rapid Methods Used to Determine the Concentration, Size Journal of Siberian Federal University 1389-0338 2021 Svyatoslav D. Ovchinnikov, Alexander P. Tolomeev Structure and Species Composition of Algae

doi: Feb Container volume may affect growth rates of ciliates and clearance rates of Journal of Plankton Research Thomas Weisse, Dunja Lukic, Xiaoteng Lu 10.1093/plankt/fbab017 2021 their microcrustacean predators in microcosm experiments

doi: Chinnadurai Karnan, Jyothibabu Retnamma, Nagarathinam Feb Microplankton size structure induced by a warm-core eddy in the western Bay Oceanologia 10.1016/j.oceano.2021.0 Arunpandi, N. Pandiyarajan, Rethinam Subramanian, 2021 of Bengal: Role of Trichodesmium abundance 2.003 Parthasarathi Singaram, Santhikrishnan Shoba

doi: Antonietta Quigg, Michael Parsons, Sibel Bargu, Koray Ozhan, Feb Marine phytoplankton responses to oil and dispersant exposures: Knowledge Marine Pollution Bulletin 10.1016/j.marpolbul.202 Kendra L. Daly, Sumit Chakraborty, Manoj Kamalanathan, 2021 gained since the Deepwater Horizon oil spill 1.112074 Deana Erdner, Sarah Cosgrove, Edward J. Buskey

doi: 10.1111.1365- Jan Michelle Tseng, Carla M. Di Filippo, Madeline Fung, Jihyun O. Functional Ecology Cascading effects of algal warming in a freshwater community 2435.13752 2021 Kim, Ian P. Forster, Yilin Zhou

doi: Dec C. Karnan, R. Jyothibabu, N. Arunpandi, K.J. Albin, S. Implications of micro-plankton and micro-detritus on the food web in the Estuarine, Coastal and Shelf Science 10.1016/j.ecss.2020.107 2020 Parthasarathi largest monsoonal estuary along the west coast of India 149

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FlowCam® Publications

If you are interested in obtaining a copy of any of these publications, please contact Yokogawa Fluid Imaging Technologies at [email protected] and we will help you.

Publication Volume Date Authors Title

doi: Dec Luz Amadei Martínez, Jonas Mortelmans, Nick Dillen, LifeWatch observatory data: phytoplankton observations in the Belgian Part of Biodiversity Data Journal 10.3897/BDJ.8.e57236 2020 Elisabeth Debusschere, Klaas Deneudt the North Sea

18th Johannesburg Int'l Conference on doi: Nov Occurrence of Cyanobacteria and Microcystin variants in Musina Raw Water Science, Engineering, Technology & 10.17758/EARES10.EAP1 J.R. Gumbo, L.K. Netshambidi, P. Mavhunga 2020 Supply and Limpopo River Sediment, South Africa Waste Management 120269

doi: 10.1038/s41598-020- Nov Constanze Kuhlisch, Julia Althammer, Andrey F. Sazhin, Hans Metabolomics-derived marker metabolites to characterize Phaeocystis Scientific Reports 77169-w 2020 H. Jakobsen, Jens C. Nejstgaard, Georg Pohnert pouchetii physiology in natural plankton communities

doi: Nov Offoro N. Kimambo, Titus Msagati, Jabulani Gumbo, Hector The Unusual Reddish-Bloom Appearance in a Freshwater Fishpond at International Journal of Environment 10.3126/ije.v9i2.32734 2020 Chikoore Kingolwira National Fish Farming Center, Morogoro, Tanzania

Jyothibabu Retnamma, Karnan Chinnadurai, Jagadeesan Environmental Science and Pollution doi: 10.1007/s11356-020- Oct Ecological responses of autotrophic microplankton to the eutrophication of the Loganathan, Arunpandi Nagarathinam, Parthasarathi Research 11354-2 2020 coastal upwelling along the Southwest coast of India Singaram, Albin Konnakkamannil Jose

doi: Oct Juan Jose Pierella Karlusich, Federico M. Ibarbalz, Chris Exploration of marine phytoplankton: from their historical appreciation to the Journal of Plankton Research 10.1093/plankt/fbaa049 2020 Bowler omics era

doi: 10.1007/s42452-020- Oct Investigating the residual characteristics of dryer lint for developing resource SN Applied Sciences Pravin Kannan, Fawzi Banat 03628-8 2020 recovery strategies

doi: 10.1007/s12237-020- Oct Elizabeth L. Harvey, Sean R. Anderson, Quintin Diou-Cass, Assessing the Temporal Variability and Drivers of Transparent Exopolymer Estuaries and Coasts 00847-5 2020 Patrick I. Duffy Particle Concentrations and Production Rates in a Subtropical Estuary

doi: Sep Thomas Kerr, James R. Clark, Elaine S. Fileman, Claire E. Collaborative deep learning models to handle class imbalance in FlowCam IEEE Access 10.1109/ACCESS.2020.3 2020 Widdicombe, Nicolas Pugeault plankton imagery 022242

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FlowCam® Publications

If you are interested in obtaining a copy of any of these publications, please contact Yokogawa Fluid Imaging Technologies at [email protected] and we will help you.

Publication Volume Date Authors Title

Nutrient addition effects on chlorophyll a , phytoplankton biomass, and Aug Justin D. Chaffin, Keara Stanislawczyk, Douglas D. Kane, Freshwater Biology doi: 10.1111/fwb.13610 heterocyte formation in Lake Erie's central basin during 2014-2017: Insights 2020 Madeline M. Lambrix into diazotrophic blooms in high nitrogen water

doi: Aug Mattias L. Johansson, Sharon Y. Lavigne, Charles W. Lake and Reservoir Management 10.1080/10402381.2020 Detecting a spreading non-indigenous species using multiple methodologies 2020 Ramcharan, Daniel D. Heath, Hugh J. MacIsaac .1797957

doi: L. Jagadeesan, T.N.R. Srinivas, A. Surendra, G. Sampath Copepods size structure in various phases of a cold-core eddy - Normalised Continental Shelf Research 10.1016/j.csr.2020.1041 Jul 2020 Kumar, Aswin Dev, Ignatious Joseph Abundance Size Spectra (NASS) approach 97

doi: 10.1038/s41598-020- Jun Ann Fairly Barnett, James H. Gledhill, Robert J. Griffitt, Marc Combined and independent effects of hypoxia and tributyltin on mRNA Scientific Reports 67650-x 2020 Slattery, Deborah J. Gochfeld, Kristine L. Willett expression and physiology of the Eastern oyster (Crassostrea virginica )

doi: 10.33910/2686- Jun A Comparative Analysis of Freshwater Testate Amoebae Species Composition Amurian Zoological Journal E.N. Tahirova, N. Yu. Snegovaya 9519-2020-12-2-189-200 2020 Between the Southeastern Part of Azerbaijan and Other Regions of Azerbaijan

S. Sunagawa, S.G. Acinas, P. Bork, C. Bowler, Tara Oceans doi: 10.1038/s41579-020- May Coordinators, D. Eveillard, G. Gorsky, L. Guidi, D. Iudicone, E. Nature Reviews Microbiology Tara Oceans: towards global ocean ecosystems biology 0364-5 2020 Karsenti, F. Lombard, H. Ogata, S. Pesant, M.B. Sullivan, P. Wincker, C. de Vargas Adam T. Greer, Adam D. Boyette, Valerie J. Cruz, Mustafa Apr Kemal Cambazoglu, Brian Dzwonkowski, Luciano M. Contrasting fine-scale distributional patterns of zooplankton driven by the Limnology and Oceanography doi: 10.1002/lno.11450 2020 Chiaverano, Steven L. Dykstra, Christian Briseno-Avena, formation of a diatom-dominated thin layer Robert K. Cowen, Jerry D. Wiggert

Apr Arash Zamyadi, Katherine E. Greenstein, Caitlin M. Glover, Impact of Hydrogen Peroxide and Copper Sulfate on the Delayed Release of Water doi: 10.3390/w12041105 2020 Craig Adams, Erik Rosenfeldt, Eric C. Wert Microcystin

doi: Susanne Menden-Deuer, Francoise Morison, Amanda L. Apr Sizes in Mono-Specific Laboratory Cultures and Whole Plankton Community Frontiers in Marine Science 10.3389/fmars.2020.002 Montalbano, Gayantonia Franze, Jacob Strock, Ewelina Rubin, 2020 Composition in the North Atlantic 54 Heather McNair, Colleen Mouw, Pierre Marrec

doi: Sabina M. Parra, Virginie Sanial, Adam D. Boyette, M. Kernal Apr Bonnet Carré Spillway freshwater transport and corresponding biochemical Continental Shelf Research 10.1016/j.csr.2020.1041 Cambazoglu, Inia M. Soto, Adam T. Greer, Luciano M. 2020 properties in the Mississippi Bight 14 Chiaverano, Angie Hoover, Michael S. Dinniman

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FlowCam® Publications

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Publication Volume Date Authors Title doi: Mar Effectiveness of a fixed-depth sensor deployed from a buoy to estimate water- Journal of Environmental Sciences 10.1016/j.jes.2020.03.00 Justin D. Chaffin, Douglas D. Kane, Alex Johnson 2020 column cyanobacterial biomass depends on wind speed 3

Mar Effect of species diversity on particle clearance and productivity in farmed Marine Ecology Progress Series doi: 10.3354/meps13266 Michael P. Acquafredda, Daphne Munroe 2020 bivalves

A. Bartual, M. Hernanz-Torrijos, I. Sala, M.J. Ortega, C. Types and Distribution of Bioactive Polyunsaturated Aldehydes in a Gradient doi: Mar González-García, M. Bolado-Penagos, A. Lopez-Urrutia, L. Marine Drugs from Mesotrophic to Oligotrophic Waters in the Alborán Sea (Western 10.3390/md18030159 2020 Romero-Martínez, L.M. Lubián, M. Bruno, F. Echevarría, C.M. Mediterranean) García doi: Louise E. Cornwell, Elaine S. Fileman, John T. Bruun, Andrew Feb Resilience of the Copepod Oithona similis to Climatic Variability: Egg Frontiers in Marine Science 10.3389/fmars.2020.000 G. Hirst, Glen A. Tarran, Helen S. Findlay, Ceri Lewis, Timothy 2020 Production, Mortality, and Vertical Habitat Partitioning 29 J. Smyth, A.J. McEvoy, A. Atkinson

doi: 10.1007/s10811-019- Jan Improving estimation of phytoplankton abundance and distribution in ballast Journal of Applied Phycology Oscar Casas-Monroy, Harshana Rajakaruna, Sarah A. Bailey 02034-x 2020 water discharges

doi: Environmental Science and Jan Wei Xiong, Xuena Huang, Yiyong Chen, Ruiying Fu, Xun Du, Zooplankton biodiversity monitoring in polluted freshwater ecosystems: A 10.1016/j.ese.2019.1000 Ecotechnology 2020 Xingyu Chen, Aibin Zhan technical review 08

doi: Dec Understanding Diatoms' Past and Future Biogeochemical Role in High-Latitude Geophysical Research Letters Jeffrey W. Krause, Michael W. Lomas 10.1029/2019GL085602 2019 Seas

doi: Dec The Effects of River Algae and Pore Water Flow on the Feeding of Juvenile JGR Biogeosciences Victor Fung, Josef D. Ackerman 10.1029/2019JG005302 2019 Mussels

doi: Dec Impact of extreme wet and dry years on the persistence of Microcystis harmful Quaternary International 10.1016/j.quaint.2019.1 P.W. Lehman, T. Kurobe, S.J. The 2019 algal blooms in San Francisco Estuary 2.003 doi: Dec Journal of Great Lakes Research 10.1016/j.jglr.2019.10.0 Kayden C. Nasworthy, Anne E. Scofield, Lars G. Rudstam Feeding ecology of Limnocalanus macrurus in the Laurentian Great Lakes 2019 11 Dynamic changes in dissolved organic matter composition in a Mountain Lake doi: 10.1007/s00027-019- Dec Garrett P. Rue, Joshua P. Darling, Emily Graham, Malak M. Aquatic Sciences under ice cover and relationships to changes in nutrient cycling and 0687-3 2019 Tfaily, Diane M. McKnight phytoplankton community composition doi: Dec C. Karnan, R. Jyothibabu, N. Arunpandi, K. Jose Albin, S. Response of microplankton size structure to summer stratification, freshwater Continental Shelf Research 10.1016/j.csr.2019.1040 2019 Parthasarathi, S. Santhi Krishnan influx and coastal upwelling in the Southeastern Arabian Sea 38

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FlowCam® Publications

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Publication Volume Date Authors Title doi: Environmental Technology & Dec Riley E. Steele, R. Timothy Patterson, Paul B. Hamilton, Nawaf Assessment of FlowCam technology as a potential tool for rapid semi-automatic 10.1016/j.eti.2019.1005 Innovation 2019 A. Nasser, Helen M. Roe analysis of lacustrine Arcellinida (testate lobose amoebae) 80

doi: 10.1007/s00027-019- Nov Kelly A. Loria, Diane McKnight, Dillon M. Ragar, Pieter T.J. The life aquatic in high relief: shifts in the physical and biological characteristics Aquatic Sciences 0684-6 2019 Johnson of alpine lakes alone an elevation gradient in the Rocky Mountains, USA

doi: Nov Chase C. Chaplin, Marnie Tabor, Israel A. Marquez, Kanchan Gulf and Caribbean Research Resuscitation of Microalgae from Mississippi River Plume Sediments 10.18785/gcr.3001.015 2019 Maiti, Jeffrey W. Krause

doi: Nov Comparison of FlowCAM and microscope biovolume measurements for a Journal of Plankton Research Allison R. Hrycik, Angela Shambaugh, Jason D. Stockwell 10.1093/plankt/fbz056 2019 diverse freshwater phytoplankton community

doi: Oct Utilization of different dissolved organic phosphorus sources by Symbiodinium FEMS Microbial Ecology L. Tian-Tian, H. Ping, L. Jia-Xing, K. Zhi-Xin, T. Ye-Hui 10.1093/femsec/fiz150 2019 voratum in vitro

doi: Sept Lumi Haraguchi, Eero Asmala, Hans H. Jakobsen, Jacob Composition of natural phytoplankton community has minor effects on Marine Biology Research 10.1080/17451000.2019 2019 Carstensen autochthonous dissolved organic matter characteristics .1662449

Sept Christopher R. Farrow, Josef D. Ackerman, Ralph E. H. Smith, Riverine transport and nutrient inputs affect phytoplankton communities in a Freshwater Biology doi: 10.1111/fwb.13421 2019 Dave Snider coastal embayment

doi: Claudia Lorenz, Lisa Roscher, Melanie S. Meyer, Lars Sept Spatial distribution of microplastics in sediments and surface waters of the Environmental Pollution 10.1016/j.envpol.2019.0 Hildebrandt, Julia Prume, Martin G.J. Löder, Sebastian 2019 southern North Sea 6.093 Primpke, Gunnar Gerdts doi: Aug High-resolution observations on fine-scale spatial and temporal heterogeneity La Mer 10.32211/lamer.57.3- Khin Khin Gyi, Takuo Omura, Rie Nakamura, Yuji Tanaka 2019 of phytoplankton communities using FlowCam 4_0 doi: Aug Science of The Total Environment 10.1016/j.scitotenv.2019 Katherine Tran, Josef Daniel Ackerman Mussels partition resources from natural waters under flowing conditions 2019 .133870

doi: Aug L.T. Bach, P. Stange, J. Taucher, E.P. Achterberg, M. The influence of plankton community structure on sinking velocity and Global Biogeochemical Cycles 10.1029/2019GB006256 2019 Algueró‐Muñiz, H. Horn, M. Esposito, U. Riebesell remineralization rate of marine aggregates

doi: Aug Assessment of phytoplankton photo-physiological status from a tropical Ecological Indicators 10.1016/j.ecolind.2019.0 Jagadish Siddalingappa Patil, Arga Chandrashekar Anil 2019 monsoonal estuary 3.058

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FlowCam® Publications

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Publication Volume Date Authors Title

Aug Fan-Sian Lin, Pei-Chi Ho, Akash R. Sastri, Chung-Chi Chen, Resource availability affects temporal variation of phytoplankton size structure Limnology and Oceanography doi: 10.1002/lno.11294 2019 Gwo-Ching Gong, Sen Jan, Chih-hao Hsieh in the Kuroshio east of Taiwan

doi: July Journal of Plankton Research Michelle Tseng, Evgeniya Yangel, Yi Lin Zhou Herbivory alters thermal responses of algae 10.1093/plankt/fbz043 2019

doi: July Wenjing Zhang, Xiaoxia Sun, Shan Zheng, Mingliang Zhu, Plankton abundance, biovolume, and normalized biovolume size spectra in the Deep-Sea Research II 10.1016/j.dsr2.2019.07. 2019 Junhua Liang, Juan Du, Chenghao Yang northern slope of the South China Sea in autumn 2014 and summer 2015 006

June Junsu Park, Hyunho Lee, Cheol Young Park, Samiul Hasan, Tae- Algal Morphological Identification in Watersheds for Drinking Water Supply Water doi: 10.3390/w11071338 2019 Young Heo, Woo Hyoung Lee Using Neural Architecture Search for Convolutional Neural Network

doi: 10.1007/s12237-019- May Haley N. Gancel, Ruth H. Carmichael, Kyeong Park, Jeffrey W. Field Mark-Recapture of Calcein-Stained Larval Oysters (Crassostrea virginica) Estuaries and Coasts 00582-6 2019 Krause, Scott Rikard in a Freshwater-Dominated Estuary

Comparison of microscopy to a semiautomated method (FlowCAM®) for doi: 10.1007/s10750-019- May Thomas M. Detmer, Kyle J. Broadway, Cal G. Potter, Scott Hydrobiologia characterization of individual-, population-, and community-level 03980-w 2019 F. Collins, Joseph J. Parkos & David H. Wahl measurements of zooplankton

B. Krafft, K. Bakkeplass, T. Berge, M. Biuw, J. Erices, E. Jones, T. Knutsen, R. Kubilius, M. Kvalsund, U. Lindstrøm, G.J. Macaulay, ISSN: 1893-4536 May A. Renner, A. Rey, H. Søiland, R. Wienerroither, H. Ahonen, J. Report from a krill focused survey with RV Kronprins Haakon and land-based Havforsknings Instituttet Project Number: 15208 2019 Goto, N. Hoem, M. Huerta, J. Höfer, O. Iden, W. Jouanneau, L. predator work in Antarctica during 2018/2019 Kruger, H. Liholt, A. Lowther, A. Makhado, M. Mestre, A. Narvestad, C. Oosthuisen, J. Rodrigues, Øyerhamn

doi: April Thomas Mani, Sebastian Primpke, Claudia Lorenz, Gunnar Environmental Science & Technology 10.1021/acs.est.9b0136 Microplastic Pollution in Benthic Midstream Sediments of the Rhine River 2019 Gerdts, Patricia Burkhardt-Holm 3

F. Lombard, E. Boss, A.M. Waite, M. Vogt, J. Uitz, L. Stemmann, H. Sosik, J. Schulz, J.B. Romagnan, M. Picheral, J. Pearlman, M. Ohman, B. Niehoff, K. Möller, P. Miloslavich, A. doi: Apr Lara-Lpez, R. Kudela, R. Lopes, R. Kiko, L. Karp-Boss, J. Jaffe, Frontiers in Marine Science 10.3389/fmars.2019.001 Globally Consistent Quantitative Observations of Planktonic Ecosystems 2019 M. Iversen, J.O. Irisson, K. Fennel, H. Hauss, L. Guidi, G. 96 Gorsky, S. Giering, P. Gaube, S. Gallager, G. Dubelaar, R. Cowen, F. Carlotti, C. Briseño-Avena, L. Berline, K. Benoit-Bird, N. Bax, S. Batten, S. Ayata, L. Artigas, W. Appeltans

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FlowCam® Publications

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Publication Volume Date Authors Title

Apr Evolutionary Applications doi: 10.1111/eva.12805 Michelle Tseng, Joey Bernhardt, Alexander Chila Species interactions mediate thermal evolution 2019

doi: 10.1038/s41598-018- Mar J.G. Black, J.S. Stark, G.L. Johnstone, A.McMinn, P. Boyd, J. In-situ behavioural and physiological responses of Antarctic Nature Scientific Reports 36233-2 2019 McKinlay, S. Wootherspoon, J.W. Runcie microphytobenthos to ocean acidification

https://energy.arizona. edu/sites/default/files/ Mar K. Ogden, D. Anderson, S. Simpson, W. Van Voorhies, J. University of Arizona RAFT Final Report Regional Algal Feedstock Testbed RAFT%20Report%20digi 2019 Brown, M. Huesemann, M. Kacira, R. Skaggs, P. Waller tal.pdf

doi: Mar M.B. Pattullo, M.A. Mayes, S. Mandal, T. J. Mathews, J. Soil sealing by algae: An alternative to plastic pond liners for outdoor algal Algal Research 10.1016/j.algal.2019.101 2019 Dunlap, E. Perfect, L. D. McKay, E.V. Nield, R.A. Efroymson cultivation 414 T.V. Viana, G.O. Fistarol, M. Amario, R.B. Menezes, B.L.R. doi: Mar Carneiro, D.M. Chaves, P.I. Hargreaves, A.W. Silva-Lima, J.L. Massive Blooms of Chattonella subsalsa Biecheler (Raphiodphyceae ) in a Frontiers in Marine Science 10.3389/fmars.2019.000 2019 Valentin, D.R. Tenenbaum, E.F. Arruda, R. Paranhos, P.S. Hypereutrophic, Tropical Estuary - Guanabara Bay, Brazil 85 Salomon

D2.9- CPR Add-on variables: A report on additional and add-on Ares(2019)1302036 - Feb AtlantOS Project Report M. Edwards, R. Stern & G. Graham enhancements for the Continuous Plankton Recorder Survey programme 26/02/2019 2019 including add-on variables and molecular analysis

doi: Dec A. I. Torres, F. E. Paparazzo, G. N. Williams, A. L. Rivas, M. E. Oceanography 10.5670/oceanog.2018.4 Dynamics of Macronutrients in the San Jorge Gulf During Spring and Summer 2018 Solís and J. L. Esteves 07 Temperature x light interaction and tolerance of high water temperature in the Dec Journal of Phycology doi: 10.1111/jpy.12826 C. Wirth, R. Limberger, T. Weisse planktonic freshwater flagellates Cryptomonas (Cryptohyceae) and Dinobryon 2018 (Chrysophyceae)

Nov Effect of anthropogenic warming on microbial respiration and particulate Aquatic Microbial Ecology doi: 10.3354/ame01889 E.L. Cavan, P.W. Boyd 2018 organic carbon export rates in the sub-Antarctic Southern Ocean

doi: Nov Jade Proctor, Frances E. Hopkins, Elaine S. Fileman, Penelope Smells good enough to eat: Dimethyl sulfide (DMS) enhances copepod Marine Pollution Bulletin 10.1016/j.marpolbul.201 2018 K. Lindeque ingestion of microplastics 8.11.014

doi: Oct Metabolic theory and temperature-size rule explain the temperature The American Naturalist J. R. Bernhardt, J.M. Sunday, M.I. O'Connor 10.5061/dryad.9kv23s 2018 dependence of population carrying capacity

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FlowCam® Publications

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Publication Volume Date Authors Title doi: Oct T. Kitahashi, H. Kayama Watanabe, M. Tsuchiya, H. MethodsX 10.1016/j.mex.2018.10.0 A new method for acquiring images of meiobenthic images using the FlowCam 2018 Yamamoto, H. Yamamoto 12

doi: Oct A novel method for cell counting of Microcystis colonies in water resources Environmental Engineering Research Jungsu Park, Youngje Kim, Minjae Kim, Woo Hyoung Lee 10.4491/eer.2018.266 2018 using a digital imaging flow cytometer and microscope

doi: Oct Madelyn N. Woods, Margaret E. Stack, David M. Fields, Susan Microplastic fiber uptake, ingestion, and egestion rates in the blue mussel Marine Pollution Bulletin 10.1016/j.marpolbul.201 2018 D. Shaw, Patricia A. Matrai (Mytilus edulis) 8.10.061 doi: Sept Species diversity of resident green algae slows the establishment and Limnologica 10.1016/j.limno.2018.09 Madeline P. Nolan, Bradley J. Cardinale 2018 proliferation of the cyanobacterium Microcystis aeruginosa .002

Environmental Science and Pollution doi: 10.1007/s11356-018- Sept Long Wang, Panpan Liu, Jian Sun, Yi Zhang, Qiaohong Zhou, Comparison and combination of selective grazing on natural seston by benthic Research 3287-1 2018 Zhenbin Wu, Feng He bivalves (Hyriopsis cumingii) and pelagic fish (Hypophthalmichthys molitrix)

Limnology and Oceanography: doi: Sept M.D Graham, J. Cook, J. Graydon, D. Kinniburgh, H. Nelson, S. High-resolution imaging particle analysis of freshwater cyanobacterial blooms Methods 10.1002/lom3.10274 2018 Pilieci, R.D. Vinebrooke

doi: Sept Water Resources Research Rakesh Mistry & Josef D. Ackerman Flow, flux and feeding in freshwater mussels 10.1029/2018WR023112 2018

Yazmin Sánchez Roque, Yolanda del Carmen Pérez-Luna, Joel doi: Sept Moreira Acosta, Neín Farrera Vázquez, Roberto Berrones Evaluation of the population dynamics of microalgae isolated from the state of Biodiversity Data Journal 10.3897/BDJ.6.e28496 2018 Hernández, Sergio Saldaña Trinidad, Joseph Sebastian Chiapas, Mexico with respect to the nutritional quality of water Pathiyamottom doi: Aug Lumi Haraguchi, Hans H. Jakobsen, Nina Lundholm, Jacob Frontiers in Marine Science 10.3389/fmars.2018.002 Phytoplankton Community Dynamic: A Driver for Ciliate Trophic Strategies 2018 Carstensen 72 July Freshwater Biology doi: 10.1111/fwb.13184 Shaylah Tuttle-Raycraft & Josef Daniel Ackerman Does size matter? Particle size vs. quality in bivalve suspension feeding 2018 doi: July R. Jyothibabu, N. Arunpandi, C. Karnan, L. Jagadeesan, T.M. Fragilariopsis sp. bloom causes yellowish-brown waters off Alappuzha, south- Current Science 10.18520/cs/v115/i1/15 2018 Manojkumar, K.K. Balachandran, S.W.A. Naqvi central Kerala coast, India, during the mud bank up-welling phase 2-159

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Publication Volume Date Authors Title

doi: July H. Zhang, S. Tangparitkul, B. Hendry, J. Harper, Y.K. Kim, T.N. Selective separation of cesium contaminated clays from pristine clays by Chemical Engineering Journal 10.1016/j.cej.2018.07.13 2018 Hunter, J.W. Lee, D. Harbottle floatation 5

doi:10.3390/toxins10070 July M. Magonono, P.J. Oberholster, S. Addmore, M. Stanley, J.R. The Presence of Toxic and Non-Toxic Cyanobacteria in the Sediments of the Toxins 269 2018 Gumbo Limpopo River Basin: Implications for Human Health

T.M. Tsagaraki, B. Pree, Ø. Leiknes, A. Larson, G. Bratbak, L. doi: 10.1038/s41396-018- June Bacterial community composition responds to changes in copepod abundance ISME Journal Øvreås, J.K. Egge, R. Spanek, M.L. Paulsen, Y. Olsen, O. 0217-7 2018 and alters ecosystem function in an Arctic mesocosm study Vadstein, T.F. Thingstad

doi: June Alternative Particle Formation Pathways in the Eastern Tropical North Pacific's Journal of Geophysical Research E.L. Cavan, S.L.C. Giering, G.A. Wolff, M. Trimmer, R. Sanders 10.1029/2018JG004392 2018 Biological Carbon Pump

Accuracy of data buoys for measurement of cyanobacteria, cholrophyll, and Environmental Science and Pollution doi: 10.1007/s11356-018- June J.D. Chaffin, D.D. Kane, K. Stanislawczyk, E.M. Parker turbidity in a large lake (Lake Erie, North America): implications for estimation Research 2612-z 2018 of cyanobacterial bloom parameters from water quality sonde measurements

doi: 10.1111/1462- June Jozef I. Nissimov, Rebecca Vandzura, Christopher T. Johns, Dynamics of transparent exopolymer particle (TEP) production and aggregation Environmental Microbiology 2920.14261 2018 Frank Natale, Liti Haramaty, Kay D. Bidle during viral infection of the coccolithophore, Emiliania huxleyi

doi: 10.1038/s41598-018- June R.X. Poulin, S. Hogan, K.L. Poulson-Ellestad, E. Brown, F.M Karenia brevis allelopathy compromises the lipidome membrane integrity, and Nature 27845-9 2018 Fernández, J. Kubanket photsynthesis of competitors

June A.K.M. Hasberg, S. Bijaksana, P. Held, J. Just, M. Melles, M.A. Modern sedimentation processes in Lake Towuti, Indonesia, revealed by the Sedimentology doi: 10.1111/sed.12503 2018 Morlock, S. Opitz, J. M. Russell, H. Vogel, V. Wennrich composition of surface sediments doi: June Tran Ngoc Phu Nguyen, Quynh Thi Phuong Bui, Chihpin Performance evalution of a hydrogen-fed bioreactor treating nitrate containing Sustainable Environmental Research 10.1016/j.serj.2018.06.0 2018 Huang wastewater under long-term operation 01 Proc. SPIE 10631, Ocean Sensing and doi: May Individual particle measurements to monitor ecological processes in the Indian Malcom N. McFarland, Nicole Stockley, James M. Sullivan Monitoring X 10.1117/12.2309790 2018 River Lagoon, FL

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Publication Volume Date Authors Title Greer, A.T., A.M. Shiller, E.E. Hofmann, J.D. Wiggert, S.J. Warner, S.M. Parra, C. Pan, J.W. Book, D. Joung, S. Dykstra, J.W. Krause, B. Dzwonkowski, I.M. Soto, M.K. Cambazoglu, doi: A.L. Deary, C. Briseño-Avena, A.D. Boyette, J.A. Kastler, V. Apr Functioning of coastal river-dominated ecosystems and implications for oil spill Oceanography 10.5670/oceanog.2018.3 Sanial, L. Hode, U. Nwankwo, L.M. Chiaverano, S.J. O’Brien, 2018 response: From observations to mechanisms and models 02 P.J. Fitzpatrick, Y.H. Lau, M.S. Dinniman, K.M. Martin, P. Ho, A.K. Mojzis, S.D. Howden, F.J. Hernandez, I. Church, T.N. Miles, S. Sponaugle, J.N. Moum, R.A. Arnone, R.K. Cowen, G.A. Jacobs, O. Schofeld, and W.M. Graham doi: Mar Jae Hoon Noh, Wonkook Kim, Seung Hyun Son, Jae-Hyun Ahn, Remote quantification of Cochlodinium polykrikoides blooms occurring in the Harmful Algae 10.1016/j.hal.2018.02.00 2018 Young-Je Park East Sea using geostationary ocean color imager (GOCI) 6 doi: Mar Rapid detection and quantification of the potentially toxic cyanobacterium Water Research 10.1016/j.watres.2018.0 Thomas Weisse and Victoria Bergkemper 2018 Planktothrix rubescen s by in-vivo fluorometry and flow cytometry 3.052 doi: Feb A mesocosm investigation of the effects of quagga mussels (Dreissena Journal of Great Lakes Research 10.1016/j.jglr.2017.11.0 Andrya L. Whitten, Jose R. Marin Jarrin, A. Scott McNaught 2018 rostriformis bugensis ) on Lake Michigan zooplankton assemblages 05

doi: Feb Justin D. Chaffin, Timothy W. Davis, Derek J. Smith, Mikayla Interactions between nitrogen form, loading rate, and light intensity on Harmful Algae 0.1016/j.hal.2018.02.001 2018 M. Baer, Gregory J. Dick Microcystis and Planktothrix growth and microcystin production

doi: Jan Jeff Sober, Andrew Gwinn, Charles Ortiz, Richard Correa, WEFTEC 2018 Proceedings 10.2175/193864718825 Grit Settling Velocity: A Visual Comparison of Clean Sand and Wastewater Grit 2018 Marcia Sherony 156655 Jan Nonlinear averaging of thermal experience predicts population growth rates in bioRxiv doi: 10.1101/247908 J.R. Bernhardt, J.M. Sunday, P. L. Thompson, M. I. O'Connor 2018 a thermally variable environment [Manuscript under review]

doi: 10.5194/bg-2017- Jan N. Briggs, K. Guðmundsson, I. Cetinić, E. D'Asaro, E. Rehm, C. A multi-method autonomous assessment of primary productivity and export Biogeosciences 534 2018 Lee, M. Jane Perry efficiency in the springtime North Atlantic [Manuscript under review]

doi: Jan Methods in Molecular Biology 10.1007/7651_2017_10 Katariina Natunen Monitoring Microalgal Neutral Lipid Accumulation with Nile Red 2018 2 doi: Dec Harmful Algae 10.1016/j.hal.2017.12.00 R. X. Poulin, K. L. Poulson-Ellestad, J. S. Roy, J. Kubanek Variable allelopathy among phytoplankton reflected in red tide metabolome 2017 2 doi: Dec L. Romero-Martinez, C. van Slooten, E. Nebot, A. Acevedo- Assessment of imaging-in-flow system (FlowCam) for systematic ballast water Science of The Total Environment 10.1016/j.scitotenv.2017 2017 Merino, L. Peperzak management .06.070

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Publication Volume Date Authors Title K.R. Arrigo, G. L. van Dijken, A.-C. Alderkamp, Z.K. Erickson, doi: Nov Journal of Geophysical Research K.M. Lewis, K.W. Lowry, H. L. Joy-Warren, R. Middag, J.E. Early spring phytoplankton dynamics in the Western Arctic Peninsula 10.1002/2017JC013281 2017 Nash-Arrigo, V. Selz, W. van de Poll

doi:10.1007/s10750-017- Nov Do current European lake monitoring programmes reliably estimate Hydrobiologia Victoria Bergkemper, Thomas Weisse 3426-6 2017 phytoplankton community changes?

Oct Abiotic and biotic controls on the copepod Pseudodiaptomus forbesi in the Marine Ecology Progress Series doi: 10.3354/meps12294 Karen Kayfetz and Wim Kimmerer 2017 upper San Francisco Estuary doi: Sept The Tail of Two Models: Impact of Circularity and Biomass Non-Homogeneity Water Research 10.1016/j.watres.2017.0 Y. Azimi, Y. Liu, T.C. Tan, D.G. Allen, R.R. Farnood 2017 on UV Disinfection of Wastewater Flocs 9.011 doi: Sept Evolution in temperature-dependent phytoplankton traits revealed from a Royal Society Proceedings B Jana Hinners, Anke Kremp, Inga Hense 10.1098/rspb.2017.1888 2017 sediment archive: do reaction norms tell the whole story? doi: Melanie Bergmann, Vanessa Wirzberger, Thomas Krumpen, Environmental Science and Aug High quantities of microplastic in arctic deep-sea sediments from HAUSGARTEN 10.1021/acs.est.7b0333 Claudia Lorenz, Sebastian Primpke, Mine B. Tekman, Gunnar Technology 2017 Observatory 1 Gerdts doi: Aug Microzooplanktonic grazers - A potentially devastating threat to the Algal Research 10.1016/j.algal.2017.08. John G. Day, Yingchun Gong, Qiang Hu 2017 commercial success of microalgal mass culture 024 doi: Effects of elevated CO on phytoplankton community biomass and species July M. Keys, G. Tilstone, H. S. Findlay, C. E. Widdicombe, T. 2 Harmful Algae 10.1016/j.hal.2017.06.00 composition during a spring Phaeocystis spp. Bloom in the western English 2017 Lawson 5 Channel

July C. Karnan, R. Jyothibabu, T.M. Manoj Kumar, L. Jagadeesan, On the accuracy of assessing copepod size and biovolume using FlowCam and Indian Journal of Geo Marine Sciences Volume 46 (07) 2017 N. Arunpandi traditional microscopy

doi: Evaluation of water quality during successive severe drought years within July Tomofumi Kurobe, Peggy W. Lehman, M.E. Haque, Tiziana Science of The Total Environment 10.1016/j.scitotenv.2017 Microcystis blooms using fish embryo toxicity tests for the San Francisco 2017 Sedda, Sarah Lesmeister, Swee The .07.267 Estuary, California

Integrated Ocean Observing System and Quality Assurance/Quality May A Manual for Real-Time Quality Control of Phytoplankton Data: A Guide to Version 1.0 See document for list of references. Control of Real Time Oceanographic 2017 Quality Control and Quality Assurance for Phytoplankton Observations Data

doi: May Phytoplankton response to the summer 2015 heat wave - a case study from Inland Waters 10.1080/20442041.2017 Victoria Bergkemper, Thomas Weisse 2017 prealpine Lake Mondsee, Austria .1294352

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Publication Volume Date Authors Title Maria Hamilton, Gwenn M.M. Hennon, Rhonda Morales, doi: May Dynamics of Teleaulax-like cryptophytes during the decline of a red water Journal of Plankton Research Joeseph Needoba, Tawnya D. Peterson, Megan Schatz, Jarred 10.1093/plankt/fbx029 2017 bloom in the Columbia River Estuary Swalwell, E. Virginia Armbrust, Francois Ribalet J. Taucher, L.T. Bach, T. Boxhammer, A. Nauendorf, E.P. doi: Influence of Ocean Acidification and Deep Water Upwelling on Oligotrophic Apr Achterberg, M. Algueró-Muñiz, J. Aristegui, J. Czerny, M. Frontiers in Marine Science 10.3389/fmars.2017.000 Plankton Communities in the Subtropical North Atlantic: Insights from an In 2017 Esposito, W. Guan, M. Haunost, H. G. Horn, A. Ludwig, J. 85 situ Mesocosm Study Meyer, C. Spisla, M. Sswat, P. Stange, U. Riebesell

doi: 10.1007/s00300-017- Apr Zooplankton excretion metabolites stimulate Southern Ocean phytoplankton Polar Biology A. Coello-Camba, M. Llabrés, C.M. Duarte, S. Agustí 2123-2 2017 growth

Apr Microbial food web structure and dynamics across a natural temperature Marine Ecology Progress Series doi: 10.3354/meps12072 Gayantonia Franzè & Peter J. Lavrentyev 2017 gradient in a productive polar shelf system

doi: Apr H.J. Smith, R.A. Foster, D.M. McKnight, J.T. Lisle, S. Littmann, nature geoscience 110.1038/NGEO2925 Microbial formation of labile carbon in Antarctic glacial environments 2017 M.M.M. Kuypers, C.M. Foreman pone.0175235

doi: 10.1371/journal. Apr Modified FlowCam procedure for quantifying size distribution of zooplankton PLoS ONE E. Wong, A.R. Sastri, F-S. Lin, C-h. Hsieh pone.0175235 2017 with sample recycling capacity M. Winder, J-M. Bouquet, J.R. Bermúdez, S.A. Berger, T. Mar Hansen, J. Brandes, A.F. Sazhin, J.C. Nejstgaard, U, Båmstedt, Increased appendicularian zooplankton alter carbon cycling under warmer Limnology and Oceanography doi: 10.1002/lno.10516 2017 H.H. Jakobsen, J. Dutz, M.E. Frischer, C. Troedsson, E.M. more acidified ocean conditions Thompson

doi: 10.1007/s00227-017- Mar Benthic dinoflagellate blooms in tropical intertidal rock pools: elucidation of Marine Biology J.S. Patil, R.V. Rodrigues, P. Paul, K. Sathish, M. Rafi, A.C. Anil 3123-z 2017 photoprotection mechanisms

Mar Journal of Phycology doi: 10.1111/jpy.12528 I.W. Bishop, S.A. Spaulding Life cycle size dynamics in Didymosphenia geminata (Bacillariophyceae) 2017

Maria Segovia, M. Rosario Lorenzo, Maria T. Maldonado, Aud Larsen, Stella A. Berger, Tatiana M. Tsagaraki, Francisco J. Mar Iron availability modulates the effects of future CO levels within the marine Marine Ecology Progress Series doi: 10.3354/meps12025 Lázaro, Concepción Iñiguez, Candela García-Gómez, Armando 2 2017 planktonic food web Palma, Michaela A. Mausz, Francisco J.L. Gordillo, Jose A. Fernández, Jessica L. Ray, Jorun K. Egge

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Publication Volume Date Authors Title

Environmental Monitoring and doi: 10.1007/s10661-017- Mar Copepod grazing and their impact on phytoplankton standing stock and L. Jagadeesan, R. Jyothibabu, N. Arunpandi, S. Parthasarathi Assessment 5804-y 2017 production in a tropical coastal water during the different seasons

doi: C. Karnan, R. Jyothibabu, N. Arunpandi, L. Jagadeesan, K.R. Mar Discriminating the biophysical impacts of coastal upwelling and mud banks Journal of Marine Systems 10.1016/j.jmarsys.2017. Muraleedharan, A.K. Pratihari, K.K. Balachandran, S.W.A 2017 along the southwest coast of India 02.012 Naqvi

Feb A.S. Milde, W.B. Richardson, E.A. Strauss, J.H. Larson, J.M. Spatial and Temporal Dynamics of Suspended Particle Characteristics and River Research and Applications doi: 10.1002/rra.3131 2017 Vallazza, B.C. Knights Composition in Navigation Pool 19 of the Upper Mississippi River

doi:10.1371/journal.pon Feb Tamar Goulet, Kartick Shirur, Blake Ramsby, Roberto Iglesias- The effects of elevated seawater temperatures on Caribbean gorgonian corals PLOS ONE e.0171032 2017 Prieto and their algal symbionts, Symbiodinium spp.

doi: Jan Elaine Fileman, Daniel White, Rachel Harmer, Ulgen Aytan, Stress of life at the ocean's surface: Latitudinal patterns of UV sunscreens in Progress in Oceanography 10.1016/j.pocean.2017.0 2017 Glen Tarran, Tim Smyth, Angus Atkinson plankton across the Atlantic 1.001

Applied and Environmental doi: 10.1128/AEM.03317- Jan In-vivo single-cell fluorescence and the size-scaling of phytoplankton Eva Alvarez, Enrique Nogueira, Angel Lopez-Urrutia Microbiology 16 2017 chlorophyll content

doi: Jan Jocelyn Kydd, Harshana Rajakaruna, Elizabeta Briski, Sarah Examination of a high resolution laser optical plankton counter and FlowCam Journal of Sea Research 10.1016/j.seares.2017.0 2017 Bailey for measuring plankton concentration and size 1.003

Monitoring cell-specific neutral lipid accumulation in Phaeodactylum Jan Journal of Phycology doi: 10.1111/jpy.12504 Katariina Natunen, Jukka Seppälä, Riikka-Juulia Koivula, Jukka Pellinen tricornutum (Bacillariophyceae) with Nile Red staining - a new method for 2017 FlowCAM

doi: Jan P.W. Lehman, T. Kurobe, S. Lesmeister, D. Baxa, A. Tung, S.J. Impacts of the 2014 severe drought on the Microcystis bloom in San Francisco Harmful Algae 10.1016/j.hal.2017.01.01 2017 Teh Estuary 1

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Publication Volume Date Authors Title https://search.proquest. com/openview/ea0533f 1134c45835430aa5f890 The Effects of Climate Change on an Alpine Lake System: A Mesocosm University of Colorado Master's Thesis 2017 Matthew Richard Oliver 76d15/1?pq- Experiment origsite=gscholar&cbl=1 8750&diss=y

University of Rhode Island http://digitalcommons.u Assessment of Fluid Imaging for Determination of Diatom Assemblage 2017 Neil Redmond Master's Thesis ri.edu/theses/1072 Composition and Biometrics of Southern Ocean Sediment

Research Journal of Pharmaceutical, Dec Roslan Omar, Zaharah Ibrahim, Zailan Zahid, Elias Ismail, Algae Disintegration in Raw Water at Semberong Barat Dam Johor Malayzia ISSN: 0975-8585 Biological, and Chemical Sciences 2016 Ikmal Hisham, Shahzatul Irwan Omar, Siddiq Mustafar Using Sonification Wave

Bernadette Pree, Aud Larsen, Jorun Karin Egge, Paolo Nov Simonelli, Rakhesh Madhusoodhanan, Tatiana Margo Dampened copepod-mediated trophic cascades in a microzooplankton- Limnology and Oceanography doi: 10.1002/lno.10483 2016 Tsargaraki, Selina Vage, Svein Rune Erga, Gunnar Bratbak, T. dominated microbial food web: A mesocosm study Frede Thingstad doi: Nov Yifei Wang, Maria Castillo-Keller, Everett Eustance, Milton Early detection and quantification of zooplankton grazers in algal cultures by Algal Research 10.1016/j.algal.2016.11. 2016 Sommerfeld FlowCam 012 doi: Oct Iago Corrêa, Paulo Drews Jr., Márcio Silva de Souza, Virginia BRACIS Conference Publication 10.1109/BRACIS.2016.02 Super microalgae classification in imbalanced dataset 2016 Maria Tavano 0 Chinese Journal of Oceanology and doi: 10.1007/s00343-017- Sept Effects of Lugol's iodine solution and formolin on cell volume of three bloom- Yang Yang, Sun Xiaoxia, Zhao Yongfang Limnology 5378-0 2016 forming dinoflagellates Bonggil Hyun, Se-Jong Ju, Ah-Ra Ko, Keun-Hyung Choi, Seung Vol. 51 Issue 3, pp 333- Sept Thermal effects on the growth and fatty acid composition of four harmful algal Ocean Science Journal Won Jung, Pung-Guk Jang, Min-Chul Jang, Chang Ho Moon, 342 2016 bloom species: Possible implications for ichthyotoxicity Kyoungsoon Shin Darren Giling, Jens Nejstgaard, Stella Berger, Hans-Peter Sept Thermocline deepening boosts ecosystem metabolism: Evidence from a large- Global Change Biology doi: 10.1111/gcb.13512 Grossart, Georgiy Kirillin, Armin Penske, Maren Lentz, Peter 2016 scale lake enclosure experiment simulating a summer storm Casper, Jorg Sareyka, Mark Gessner Sept Characterizing the phytoplankton soup: pump and plumbing effects on the Optics Express Vol. 24, No. 18 Ivona Cetinic, Nicole Poulton, Wayne Slade 2016 particle assemblage in underway optical seawater systems doi: 10.1186/s13068-016- Sept Iago Teles Dominguez Cabanelas, Mathijs van der Zwart, Sorting cells of the microalga Chlorococcum littorale with increased Biotechnology for Biofuels 0595-x 2016 Dorinde M. M. Kleinegris, René H. Wijffels, and Maria Barbosa triacylglycerol productivity

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Publication Volume Date Authors Title

doi: Aug Carmen Mompeán, Antonio Bode, Mikel Latasa, Bieito The influence of nitrogen inputs on biomass and trophic structure of ocean Journal of Plankton Research 10.1093/plankt/fbw052 2016 Fernández-Castro, Beatriz Mouriño-Carballido, Xabier Irigoien plankton: a study using biomass and stable isotope size-spectra

doi: Journal of Experimental Marine July Seasonal changes in bioluminescence and dinoflagellate composition in a 10.1016/j.jembe.2016.0 Brenda Maria Soler-Figueroa, Ernesto Otero Biology and Ecology 2016 tropical bioluminescent bay, Bahia Fosforescente, La Parguera, Puerto Rico 7.008 Fanny Monteiro, Lennart Bach, Colin Brownlee, Paul Brown, Rosalind Rickaby, Alex Poulton, Toby Tyrrell, Luc Beaufort, doi: July Science Advances Stephanie Dutkiewicz, Samantha Gibbs, Magdalena Why marine phytoplankton calcify 10.1126/sciadv.1501822 2016 Gutowska, Renee Lee, Ulf Riebesell, Jeremy Young and Andy Ridgwell M. D. Rowe, E. J. Anderson, T. T. Wynne, R. P. Stumpf, D. L. doi: June Vertical distribution of buoyant Microcystis blooms in a Lagrangian particle Journal of Geophysical Research Fanslow, K.Kijanka, H. A. Vanderploeg, J. R. Strickler4, T. W. 10.1002/2016JC011720 2016 tracking model for short-term forecasts in Lake Erie Davis http://dx.doi.org/10.101 May Reda A.I. Abou-Shanab, Manjinder Singh, Anangelica Rivera- Effect of Brachionus rubens on the growth characteristics of various species of Electronic Journal of Biotechnology 6/j.ejbt.2016.06.005 2016 Cruz, Grace Power, Thomas Bagby-Moon, Keshav Das microalgae

Imaging Flow Cytometry: Methods and Protocols, Methods in Molecular doi: 10.1007/978-1-4939- Apr Springer Science + Business Media Natasha S. Barteneva, Ivan A. Vorobjev, and Nicole Poulton Biology / Chapter 17 - FlowCam: Quantification and Classification of 3302-0_17 2016 Phytoplankton by Imaging Flow Cytometry

Christy A. Jenkins, Joaquim Goes, Kali McKee, Helga Gomes, High-resolution shipboard measurements of phytoplankton: a way forward for doi: May SPIE. Robert Arnone, Menghua Wang, Michael Ondrusek, P.V. enhancing the utility of satellite SST and chlorophyll for mapping microscale 10.1117/12.222.5875 2016 Nagamani, T. Preethi Latha, K.H. Rao, V.K. Dadhwal features and frontal zones in coastal waters

doi: Apr Rachel Lasley-Rasher, Kathryn Nagel, Aakanksha Angra, The Royal Society - Publishing Intoxicated copepods: ingesting toxic phytoplankton leads to risky behaviour 10.1098/rspb.2016.0176 2016 Jeannette Yen doi: Teodora Rutar Shuman, Gregory Mason, Daniel Reeve, Apr Low-Energy Input Continuous Flow Rapid Pre-Concentration of Microalgae Chemical Engineering Journal 10.1016/j.cej.2016.03.12 Alexander Schacht, Ann Goodrich, Katerine Napan, Jason 2016 through Electro-Coagulation Flocculation 8 Quinn 10.1007/s12665-015- April Yu-Jie Cui, De-Fu Liu, Jia-lei Zhang, Zheng-Jian Yang, Soon- Diel migration of Microcystis during an algal bloom event in the Three Gorges Environmental Earth Sciences 5124-x 2016 Thiam Khu, Dao-Bin Ji, Lin-Xu Song, Liang-Hong Long Reservoir, China

7:10984, DOI: Mar Nature Communications Christopher F. Clements, Arpat Ozgul Including trait-based early warning signals helps predict population collapse 10.1038/ncomms10984 2016 doi I 10.1007/s10661- Feb Tumour-like anomaly of copepods-an evaluation of the possible causes in Environ. Monitor Assessment L. Jagadeesan & R. Jyothibabu 016-5230-6 2016 Indian marine waters

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Publication Volume Date Authors Title

LIMNOLOGY doi: FlowCAM optimization: Attaining good quality images for higher taxonomic 2016 Marianne G. Camoying, Aletta T. Yniguez and OCEANOGRAPHY: METHODS 10.1002/lom3.10090 classification resolution of natural phytoplankton samples

American Geophysical Union, Ocean Bibcode: Feb Assessment of the application and efficacy of the FlowCam for zooplankton Di Mauro, R., Kupchik, M.J., Benfield, M.C. Sciences Meeting 2016 2016AGUOSIS34A2324D 2016 analysis Rahulkumar Maurya, Chetan Paliwal, Kaumeel Chokshi, Imran Feb Hydrolysate of lipid extracted microalgal biomass residue: An algal growth Bioresource Technology S0960-8524(16)30144-4 Pancha, Tonmoy Ghosh, Gour Gopal Satpati, Ruma Pal, Arup 2016 promoter and enhancer Ghosh, Sandhya Mishra Carmen Garcı´a‐Comas, Akash R. Sastri, Lin Ye, Chun‐Yi Jan Prey size diversity hinders biomass trophic transfer and predator size diversity Proceedings B 175 (2015) 56–71 Chang, Fan-Sian Lin, Min-Sian Su, Gwo-Ching Gong, Chih-hao 2016 promotes it in planktonic communities Hsieh Jessica L. Ray, Katrine S. Skaar, Paolo Simonell, Aud Larsen, Molecular gut content analysis demonstrates that Calanus grazing on Vol. 542: 63–77, 2016, Jan Marine Ecology Progress Series Andrey Sazhin, Hans H. Jakobsen, Jens C. Nejstgaard, Phaeocystis pouchetii and Skeletonema marinoi is sensitive to bloom phase but doi: 10.3354/meps11560 2016 Christofer Troedsson not prey density Planet Ocean LTD 2016 Kira Coley From above and below: Monitoring Plankton in a Changing World 0(0): 1–11. Mar Benavides, Pia H. Moisander, Meaghan C. Daley, Longitudinal variability of diazotroph abundances in the subtropical North Journal of Plankton Research doi:10.1093/plankt/fbv1 2016 ANTONIO Bode, Javier Aristegui Atlantic Ocean 21 doi: June Effect of monsoonal perturbations on the occurance of phytoplankton blooms Marine Ecology Progress Series Jagadish S. Patil & Arga Chandrashekar Anil 10.3354/meps11289 2015 in a tropical bay

Mar Transparent exopolymer particles (TEP) and Coomassie stainable particles Marine Chemistry 175 (2015) 56–71 Carolina Cisternas-Novoa, Cindy Lee, Anja Engel 2015 (CSP): Differences between their origin and vertical distributions in the ocean Elena Bañares-España, María del Mar Fernández-Arjona, Microb Ecol doi Sulphide Resistance in the Cyanobacterium Microcystis aeruginosa: a Nov María Jesús García-Sánchez, Miguel Hernández-López, Environmental Microbiology 10.1007/s00248-015- Comparative Study of Morphology and Photosynthetic Performance Between 2015 Andreas Reul, Mariona Hernández Mariné, Antonio Flores- 0715-3 the Sulphide-Resistant Mutant and the Wild-Type Strain Moya A. Reul1, M. Muñoz, B. Bautista, P. J. Neale, C. Sobrino, J. M. AQUATIC BIOLOGY Vol. 22: 59–76, 2014doi: Nov Effect of CO2, nutrients and light on coastal plankton. Mercado, M. Segovia, S. Salles, G. Kulk, P. León, W. H. van de Aquat Biol 10.3354/ab00585 2015 III. Trophic cascade, size structure and composition Poll, E. Pérez, A. Buma, J. M. Blanco Pretreatment of algae-laden and manganese-containing waters by oxidation- Journal of International Water DOI:10.1016/j.watres.20 Nov Jr-Lin Lin, Lap-Cuong Hua, Yuting Wu, Chihpin Huang assisted coagulation: Effects of oxidation on algal cell viability and manganese Research 15.11.042/WR 11669 2015 precipitation Aug Life history, excystment features and growth characteristics of the Journal of Phycology doi: 10.1111/jpy.12337 Habiba Zmerli Triki, Mohamed Laabir, Ons Kéfi Daly-Yahia 2015 Mediterranean harmful dinoflagellate Alexandrium pseudogonyaulax Aug H.M. Verheyea, T. Lamont, J.A. Huggett, A. Kreinerd, I. Plankton productivity of the Benguela Current Large Marine Ecosystem Environmental Development ENVDEVD150081 2015 Hampton (BCLME) Deep Sea Research Part II: Topical Aug R. L. Pleuthner, C. T. Shaw, M. J. Schatz, E. J. Lessard, H. R. Lipid Markers of diet history and their retention during experimental starvation Studies in Oceanography 2015 Harvey in the Bering sea euphausiid Thysanoessa raschii

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Publication Volume Date Authors Title Aug Industrial Biotechnology Vol: 11 Issue 4 White, Rebecca L. and Ryan, Rebecca A. Long-Term Cultivation of Algae in Open-Raceway Ponds: Lessons from the Field 2015 Aug Limnology Oceanography Bulletin Michael Sieracki A Personal View of the Tara Oceans Expedition 2015 July Ecosphere ESA Journals Vol. 6(7) Article 116 H.R. Naughton, M.A., Alexandrou, T.H. Oakley, B.J. Cardinale Phylogenetic distance does not predict competition in green algal communities 2015 Diane K. Stoecker, Jens C. Nejstgaard, Rakhesh May Underestimation of microzooplankton grazing in dilution experiments due to Limnol. Oceanogr. 00, 2015, 00–00 Madhusoodhanan, Georg Pohnert, Stefanie Wolfram, Hans 2015 inhibition of phytoplankton growth Henrik Jakobsen, Sigitas ¬Sulcˇ ius, Aud Larsen 37(4):666-670, Apr Baptiste Le Bourg, Véronique Cornet-Barthaux, Marc Pagano, FlowCAM as a tool for studying small (80–1000 µm) metazooplankton Journal of Plankton Research doi:10.1093/plankt/fbv0 2015 Jean Blanchot communities doi:10.1007/s10811-015- Mar Optimization of environmental parameters for Nannochloropsis salina growth The Journal of Applied Phycology M. L. Bartley, W. J. Boeing, D. Daniel, B. N. Dungan, T. Schaub 0567-8 2015 and lipid content using the response surface method and invading

Jan Aud Larsen, Jorun K. Egge, Jens C. Nejstgaard, Iole Di Capua, Contrasting response to nutrient manipulation in Arctic mesocosms are Limnol. Oceanogr. 00, 2015, 1–26 2015 Runar Thyrhaug, Gunnar Bratbak, T. Frede Thingstad reproduced by a minimum microbial food web model

A. W. Silva-Lima, J. M. Walter, G. D. Garcia, N. Ramires, G. doi:10.1007/s00248-015- Feb Multiple Symbiodinium Strains Are Hosted by the Brazilian Endemic Corals Microbiology of Aquatic Systems Ank, P. M. Meirelles, A. F. Nobrega, I. D. Siva-Neto, R. L. 0573-z 2015 Mussismilia spp. Moura, P. S. Salomon, C. C. Thompson, F. L. Thompson

Bernadette Pree, Constanze Kuhlisch, Georg Pohnert, Andrey LIMNOLOGY doi: A simple adjustment to test reliability of bacterivory rates derived from the 2015 F. Sazhin, Hans Henrik Jakobsen, Maria Lund Paulsen, Marc E. and OCEANOGRAPHY: METHODS 10.1002/lom3.10076 dilution method Frischer, Diane Stoecker, Jens C. Nejstgaard, Aud Larsen Qatar University Life Seasonal patterns of zooplankton in the Qatari coast (Arabian Gulf) and Mariem A. Safi, Pedro Range, DM Estremadura, Radhouane Qscience Proceedings Science Symp. QULSS 2015 their relationship to environmental Ben Hamadou 2015 changes A. Reul, M. Muñoz, B. Bautista, P. J. Neale, C. Sobrino, J. M. Nov Effect of CO2, nutrients and light on coastal plankton. III. Trophic cascade, size Aquatic Biology Vol. 22: 59-76 Mercado, M. Segovia, S. Salles, G. Kulk, P. León, W. H. van de 2014 structure and composition Poll, E. Pérez, A. Buma, J. M. Blanco Oct I. Teles D. Cabanelas, M. Zwart, D. M.M. Kleinegris, M. J. Biosource Technology Rapid method to screen and sort lipid accumulating microalgae 2014 Barbosa, R. H. Wijffels Oct H. Masclaux, Sebastien Tortajada, Olivier Philippine, Francois- Planktonic food web structure and dynamic freshwater marshes after a lock Aquatic Sciences 2014 Xavier Robin, Christine Dupuy closing in early spring Oct Northwest Science Michelle A. Maier, Tawnya D. Peterson Observations of a Diatom Chytrid Parasite in the Lower Columbia River 2014 Association for the Sciences of Sept W. M. Balch, D. T. Drapeau, B. C. Bowler, E. R. Lyczkowski, L. Surface biological, chemical, and optical properties of the Patagonian Shelf Limnology and Oceanography 2014 C. Lubelczyk, S. C. Painter, A.J. Poulton coccolithophore bloom, the brightest waters of the Great Calcite Belt Sept K. Natunen, J. Seppälä, D. Schwenk, H. Rischer, K. Spilling, T. Nile Red staining of phytoplankton neutral lipids: species-specific fluorescence Springerlink.com 2014 Tamminen kinetics in various solvents

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Publication Volume Date Authors Title China University of Mining and Aug Identification of Cyanobacterial Communities and Their Microcystin Congeners Mulalo Grace Khabubu and Jabulani Ray Gumbo Technology Press, Xuzhou 2014 in Soda Pits at Nyla Magnesite Mine, South Africa July Journal of Paleolimnology Robert M. D’Anjou, Nicholas L. Balascio, Raymond S. Bradley Locating cryptotephra in lake sediments using fluid imaging technology 2014 July Kelsey L. Poulson-Ellestad, Elizabeth McMillan, Joseph P. Journal of Plankton Research Are offshore phytoplankton susceptible to Karenia brevis allelopathy? 2014 Montoya, Julia Kubanek doi: 1007/s10811-014- June Chunbo Wang, Xingqiang Wu, Ciuciu Tian, Qian Li, Yingying A quantitative protocol for rapid analysis of cell density and size distribution of Journal of Applied Phycology 0352-0 2014 Tian, Bing Feng, Bangding Xiao pelagic and benthic Microcystis colonies by FlowCAM June Cetinic, M. J. Perry, E. D’Asaro, N. Briggs, N. Poulton, M. E. Optical community index to assess spatial patchiness during the 2008 North Biogeosciences Discuss. 2014 Sieracki, C. M. Lee Atlantic Bloom Kelsey L. Poulson-Ellestad, Christina M. Jones, Jessie Roy, Proceedings from the National June Metabolomics and proteomics reveal impacts of chemically mediated Vol. 111 No. 123 Mark R. Viant, Facundo M. Fernández, Julia Kubanek, and Academy of Sciences 2014 competition on marine plankton Brook L. Nunn May Frontiers in Microbiology Todd William Lane, Laura Truesdale Carney Parasites in algae mass culture 2014 Cristina Garcia-Munoz, Carolos M. Garcia, Luis M. Lubian, May Metabolic state along a summer north-south transect near the Antarctic Journal of Plankton Research Angel Lopez-Urrutia, Santiago Hernandez-Leon, Julia 2014 Peninsual: a size spectra approach Ameneiro Western Washington University, King County Environmental Lab Salish Sea Eco. Conf. May Longitudinal variability of diazotroph abundances in the subtropical North King County Department of Natural Gabriela Hannach, Lyndsey Sandwick Paper 52. 2014 Atlantic Ocean Resources and Parks Seattle, Washington Cultivating the marine microalga Nannochloropsis salina under various nitrogen Apr Herman Campos, Wiebke J. Boeing, Barry N. Dungan, Tanner Biomass & Bioenergy sources: Effect on biovolume yields, lipid content and composition, and invasive 2014 Schaub organisms May P. W. Lehman, C. Kendall, M. A. Guerin, M. B. Young, S. R. Characterization of the Microcystis Bloom and Its Nitrogen Supply in San Estuaries and Coasts 2014 Silva, G. L. Boyer, S.J. The Francisco Estuary Using Stable Isotopes Apr Chun-Wei Chang, Takeshi Miki, Fuh-Kwo Shiah, Shuh-JiKao, Linking secondary structure of individual size distribution with nonlinear Ecology Vol. 95 No. 4 Pp 897-909 2014 Jiun-Tzong Wu, Akash R. Sastri, Chih-Hao Hsieh size–trophic level relationship in food webs Apr Eric D. Wert, Mei Mei Dong, Fernando L. Rosario-Ortiz, Julie Release of Intracellular Metabolites from Cyanobacteria During Oxidation Water Research Foundation 2014 Korak Processes Albert Calbet, Andrey F. Sazhin2, Jens C. Nejstgaard, Stella A. Mar Berger, Zachary S. Tait, Lorena Olmos, Despoina Sousoni, Future Climate Scenarios for a Coastal Productive Planktonic Food Web PLOS ONE 2014 Stamatina Isari, Rodrigo A. Martınez, Jean‐Marie Bouquet, Resulting in Microplankton Phenology Changes and Decreased Trophic Transfer Eric M. Thompson, Ulf Ba°mstedt, Hans H. Jakobsen

Mar Beth A. Stauffer, Joaquim I. Goes, Kali T. McKee, Helga do Comparison of spring-time phytoplankton community composition in two cold Deep Sea Research II 2014 Rosario Gomes, Phyllis J. Stabeno years from the western Gulf of Alaska into the southeastern Bering Sea

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Publication Volume Date Authors Title Soledad Morillo-García, Nerea Valcárcel-Pérez, Andrés Cózar, Mar Potential Polyunsaturated Aldehydes in the Strait of Gibraltar under Tow Tidal Marine Drugs María J. Ortega, Diego Macías, Eduardo Ramírez-Romero, 2014 Regimes Carlos M. García, Fidel Echevarría, Ana Bartual Pablo Sangra, Christina Garcia-Munoz, Carolos M. Garcia, Angeles Marrero-Diaz, Christina Sobrino, Beatirz-Mourino- Mar Carballido, Borja Aguiar-Gonzalez, Christian Henriquez- Coupling between upper ocean layaer variability and size-fractionated Marine Ecology Progress Series 2014 Pastene, Angel Rodriguez-Santana, Luis M. Lubian, Monica phytoplankton in a non-nutrient-limited environment Hernandez-Arencibia, Santiago Hernandez-Leon, Elsa Vazquez, Sheila N. Estrada-Allis Feb Teodora Rutar Schuman, Gregory Mason, Michael D. Bioresource Technology An ultra-low energy method for rapidly pre-concentrating microalgae 2014 Marsolek, Yizhou Lin, Daniel Reeve, Alexander Schacht

On an application of FlowCam to monitor wide-range occurences of Bull. Plankton Society Japan 61(1):34-40,2014 2014 Kazuhiko Koike, Maung Saw Htoo Thaw, Sigeru Kitahara phytoplankton: especially focusing on red-tide surveys

Dec Yanyan Gong, Xiao Shao, Shengping Cai, S.E. O’Reilly, Xiaodi A review of oil, dispersed oil and sediment interactions in the aquatic Marine Pollution Bulletin 2013 Hao, Dongye Zhao environment: Influence on fate, transport and remediation of oil spills Dec Freshwater Biology Ryan J. Sorichetti, Irena F. Creed , Charles G. Trick Evidence for iron-related cyanobacterial predominance in oligotrophic lakes 2013 Nov Eric C. Wert, Julie A. Korak, Rebecca A. Trenholm, Fernando L. Effect of oxidant exposure on the release of intracellular microcystin, MIB, and ScienceDirect 2013 Rosario-Ortiz geosmin from three cyanobacteria species Effects of Crude Oil Exposure on Bioaccumulation of Polycyclic Aromatic Oct Rodrigo Almeda, Zoe Wambaugh, Chao Chai, Zucheng Wang, PLOS ONE Hydrocarbons and Survival of Adult and Larval Stages of Gelatinous 2013 Zhanfei Lui, Edward J. Buskey Zooplankton Sept Diane K. Stoecker, Alison C. Weigel, Dean A. Stockwell, Microzooplankton: Abundance, Biomass and Contribution to Chlorophyll in the Deep-Sea Research II 2013 Michael W. Lomas Eastern Bering Sea in Summer Aug Paulo Drews-Jr., Rafael G. Colares, Pablo Machado, Matheus Microalgae classification using semi-supervised and active learning based on The Brazilian Computer Society 2013 2013 de Faria, Amália Detoni, Virgínia Tavano Gaussian mixture models Natasha R. Goss, Natalie Mladenov, Christine M. Seibold, Kurt Aug Quantifying particulate matter deposition in Niwot Ridge, Colorado: Collection Atmospheric Environment Chowanski, Leslie Seitz, T. Barret Wellemeyer, Mark W. 2013 of dry deposition using marble inserts and particle imaging using the FlowCAM Williams Shared ancestry influences community stability by altering competitive Proceedings of The Royal Society B – Aug Patrick A. Venail, Markos A. Alexandrou, Todd H. Oakley and interactions: evidence from a laboratory microcosm experiment using Biological Sciences 2013 Bradley J. Cardinale freshwater green algae Aug Grazers: the overlooked threat to the sustained production of future algal Future Science Group John G. Day 2013 biofuels Long-term trends and causal factors associated with Microcystis abundance Aug Hydrobiologia P.W. Lehman, K. Marr, G.L. Boyer, S. Acuna, S.J. and toxicity in San Francisco Estuary and implications for climate change 2013 impacts Aug Scaling of growth rate and mortality with size and its consequence on size Biogeosciences Pp 5267-5280 F.H. Chang, E.C. Marquis, C.W. Chang, G.C. Gong, C.H. Hsieh 2013 spectra of natural microphytoplankton assemblages in the East China Sea

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Publication Volume Date Authors Title July Eva Alvarez, Marta Moyano, Angel Lopez-Urrutia, Enrique Routine determination of plankton community composition and size structure: Journal of Plankton Research 2013 Noguiera, Renate Scharek a comparison between FlowCAM and light microscopy July Carlos Caceres, Fernando Gonzalez Taboada, Juan Hofer, Phytoplankton growth and microplankton grazing in the subtropical Northeast PLOS ONE 2013 Recardo Anadon Atlantic May Cristina Garcia-Munoz, Luis M. Lubian, Carlos M. Garcia, A mesocale study of phytoplankton assemblages around the South Shetland Polar Bio 2013 Angeles Marrero-Diaz, Pablo Sangra, Maria Vernet Islands (Antarctica) Apr Using digital flow cytometry to assess the degradation of three cyanobacteria Water Research Eric C. Wert, Mei Mei Dong, Fernando L. Rosario-Ortiz 2013 species after oxidation processes Apr Pei-Chi Ho, Chun-Wei Chang, Chih Hao Hsieh, Fuh-Kwo Shiah, Effects of increasing nutrient supply and omnivorous feeding on the size Population Ecology Vol. 55 Pp 247-259 2013 Takeshi Miki spectrum slope: a size-based nutrient-phytoplankton-zooplankton model Apr Iron and glucose effects on the morphology of Botryococcus braunii with Journal of Applied Phycology Takako Tanoi, Masanobu Kawachi, Makoto M. Watanabe 2013 assumption on the colony formation variability Apr Christina Garcia-Munoz, Angel Lopez-Urrutia, Luis M. Lubian, A comparison of primary production models in an area of high mesoscale Journal of Sea Research 2013 Carlos M. Garcia, Santiago Hernandez-Leon variability (South Shetland Islands, Antarctic) Katharine J. Carney, Oihane C. Basurko, Kayvan Pazouk, Sara Jan Difficulties in obtaining representative samples for compliance with the Ballast Marine Pollution Bulletin Marsham, Jane E. Delany, D.V. Desai, A.C. Anil, Ehsan 2013 Water Management Convention Mesbahi Eko Siswanto,, Joji Ishizaka, Sarat Chandra Tripathy, Detection of harmful algal blooms of Karenia mikimotoi using MODIS Remote Sensing of Environment 128, Pp 185-196 2013 Kazuyoshi Miyamura measurements: A case study of Seto-Inland Sea, Japan

Vol. 31 Issue 4, Pp 1091- Dec Spatiotemporal Variation in Oyster Fecundity and Reproductive Output in a Journal of Shellfish Research Raymond M. Mroch III, David B. Eggleston, Brandon J. Puckett 1101 2012 Network of No-Take Reserves Dec D. Kamykowski, K.Grabowski Pridgen, J.M. Morrison, A.A. Continental Shelf Research Cold front induced changes on the Florida panhandle shelf during October 2008 2012 McCulloch, E.S. Nyadjro, C.A. Thomas, G.A. Sinclair Dec Susan C. Sharpe , Julie A. Koester, Martina Loebl, Amanda M. Influence of Cell Size and DNA Content on Growth Rate and Photosystem II PLOS ONE Vol. 7 Issue 12 2012 Cockshutt, Douglas A.Campbell, Andrew J. Irwin, Zoe V. Finkel Function in Cryptic Species of Ditylum brightwellii

Christofer Troedsson, Jean-Marie Bouquet, Carla M. Lobon, Dec Aliona Novac, Jens C. Nejstgaard, Sam Dupont, Suncica Bosak, Effects of ocean acidification, temperature and nutrient regimes on the Marine Biology 2012 Hans H. Jakobsen, Nadezda Romanova, Lene M. Pankoke, appendicularian Oikopleura dioica : a mesocosm study Alejandro Isla, Jo¨rg Dutz, Andrey F. Sazhin, Eric M. Thompson Nov Sarah A. Spaulding, David H. Jewson, Rebecca J. Bixby, Harry Limnology & Oceanology: Methods Pp 882-890 Automated measurement of diatom size 2012 Nelson, Diane M. McKnight Aug Atmospheric deposition as a source of carbon and nutrients to an alpine Biogeosciences 9, Pp 3337-3355 N. Mladenov, M. W. Williams, S. K. Schmidt, and K. Cawley 2012 catchment of the Colorado Rocky Mountains July Alice C. Ortmann, Jennifer Anders, Naomi Shelton, Limin PLOS ONE Dispersed Oil Disrupts Microbial Pathways in Pelagic Food Webs 2012 Gong, Anthony G. Moss, Robert H. Condon May Ivona Cetinic, Mary Jane Perry, Nathan T. Briggs, Emily Kallin, Particulate organic carbon and inherent optical properties during 2008 North Journal of Geophysical Research 2012 Eric A. D'Asaro, and Craig M. Lee Atlantic Bloom Experiment May Zooplankton population connections, community dynamics, and climate Journal of Marine Science Pp 347-350 Juile E. Keister, Delphine Bonnett 2012 variability

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Publication Volume Date Authors Title Lennart Thomas Bach, Ulf Riebsell, Scarlett Sett, Sarah Febiri, An Approach for particle sinking velocity measurements in the 3-400 um range Marine Biology 159:1853-1864 2012 Paul Rzepka, Kai Georg Schultz and considerations on the effect of temperature on sinking rates World Environmental and Water doi: Apr An Innovative and Rapid Method of Assessing Particle Shape and Size in K. Osei, L. Brown, R.Y.G. Andoh, A. Gwinn Resources Congress 2010 10.1061/41114(371_379 2012 Stormwater Runoff Apr Roswati Md Amin,Ulf Båmstedt, Jens C. Nejstgaard, Iole Di Partition of planktonic respiratory carbon requirements during a phytoplankton Marine Ecology Progress Series 451, Pp 15-29 2012 Capua spring bloom Mar John J. Day, Naomi J. Thomas, Undine E.M. Achilles-Day, Bioresource Technology Early detection of protozoan grazers in algal biofuel cultures 2012 Raymond J.G. Leakey Mar Journal of Plankton Review Pp 493-509 Eva Mariazetsche, Filip J.R. Meysman Dead or Alive? Viability assessment of micro and mesoplankton 2012 Mar Improvement of plankton biovolume estimates derived from image-based Journal of Plankton Review Eva A. Álvarez, Ángel López-Urrutia, Enrique Nogueira 2012 automatic sampling devices: application to FlowCAM Mar Carole A. Llewellyn, Daniel A. White, Victor Martinez- Distribution of Mycosporine-Like Amino Acids Along a Surface Water Microbiology of Aquatic Systems 2012 Vincente, Glen Tarran, Tim J. Smyth. Meridional Transect of the Atlantic on oceanic phytoplankton The effect of egg versus seston quality on hatching success, naupliar M.Koski, L.Yebra, J.Dutz, S.H.Jonasdottir, C.Vidoudez, Marine Biology 159:643-660 2012 metabolism and survival of Calanus finmarchicus in mesocosms dominated by H.H.Jacobsen, G.Pohnert, J.C.Nejstgaard Phaeocystis and diatoms Cedric Leo Meunier, Florian M. Hantzsche, Alessandra O. Intraspecific selectivity, compensatory feeding and flexible homeostasis in the Hydrobiologica 680:53-62 2012 Cunha-Dupont, Julia Haafke, mBettina Oppermann, Arne M. phagotrophic flagellate Oxyrrhis marina : three ways to handle food quality Malzahn, Maarten Boersma fluctuations Sept - Atlantic Meridional Transect Nov Glen Tarran AMT21 Cruise Report : Atlantic Meridional Transect 2011 Oct Opflow Pp 20-21 Jonathan Dawson Quick Response is Key to Solving Taste and Odor Problems 2011 Journal of Applied Phycology Pp 25-33 2011 Takato Tanoi, Masanobu Kawachi, Makoto M. Wataanabe Effects of carbon source on growth and morphology of Botryococcus braunii Aug Radha Pyati, Lindsay L. Elvir, Erica C. Charles, Umawattee Journal of Yeast and Fungal Research Pp 106-112 Imaging flow cytometric analysis of Schizosaccharomyces pombe morphology 2011 Seenath, Tom D. Wolkow June The effects of prolonged darkness on temperate and tropical marine Marine Pollution Bulletin Pp 1233-1244 K.J. Karney, J.E. Delany, S. Sawant, E. Mesbahi 2011 phytoplankton and their implications for ballast water risk management June World Water Pp 30-32 Advanced particle imaging and analysis reveals contaminants in seconds 2011 June Mia K. Steinberg, Matthew r. First, Edward J. Lemieux, Lisa A. Journal of Applied Phycology Comparison of techniques used to count single-celled viable phytoplankton 2011 Drake, Bruce N. Nelson, David M. Kulis, Donald M. Anderson, May Optimizing models of the North Atlantic spring bloom using physical, chemical Biogeosciences Vol. 8, Pp 1291-1307 W. Bagniewski, K. Fennel, M. J. Perry, and E. A. D’Asaro 2011 and bio-optical observations from a Lagrangian float NSF Biological & Chemical The 2008 North Atlantic Bloom Experiment - Abundance and Biomass Mar Oceanography Data Management Michael Sieracki, Nicole J. Poulton determination of heterotrophic and autotrophic bacteria, phototrophic and 2011 Office heterotrophic nanoplankton, & microplankton -including instrument calibration

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Publication Volume Date Authors Title May Cell size dependence of additive versus synergetic effects of UV radiation and Environmental Pollution Pp 1307-1316 Pedro Echeveste, Susana Ajusti, Jordi Dachs 2011 PAHs Dynamics of dissolved and particulate polyunsaturated aldehydes in Mar Charles Vidoudez, Jens Christian Nejstgaard, Hans Henrik Marine Drugs Pp 345-358 mesocosms inoculated with different densities of the diatom Skeletonema 2011 Jakobsen, Georg Pohnert marionoi Mark A. Brzezinski, S.B. Baines, William M. Balch, C.P. Buecher, Fei Chai, R.C. Dugdale, J.W. Krause, M.R. Landry, A. Feb Deep-Sea Research II Pp 493-511 Marchi, Chris I. Measures, D. M. Nelson, A.E. Parker, A. J. Co-limitation of diatoms by iron and silicic acid in the equatorial Pacific 2011 Poulton, K.E. Selph, P.G. Strutton, A.G. Taylor, Benjamin S. Twining Jan Eva Álvarez, Ángel López-Urrutia, Enrique Nogueira, Santiago How to effectively sample the plankton size spectrum? A case study using Journal of Plankton Review Pp 1-15 2011 Fraga FlowCAM Jan Maria Stockenreiter, Anne-Kathrin Graber, Florian Haupt & Journal of Applied Phycology The effect of species diversity on lipid production by micro-algal communities 2011 Herwig Stibor Belgian Science Policy – Research C. Lancelot, V. Rousseau, N. Gypens, J.Y. Parent, L.N. Combined effects of changing hydroclimate and human activity on coastal Programme Science for Sustainable 2011 Terseleer, G. Lacroix, X. Desmit, K. Ruddick, K. Van ecosystem health Development Nieuwenhove, D. Delbare, K. Denis, P. Grosjean Marine Pollution Bulletin Vol. 60, Pp 2117-2122 A. G. Bauman, J.A. Burt, D.A. Feary, E. Marquis, P. Usselgio Tropical harmful algal blooms: An emerging threat to coral reef communities Sept Defense Technology Edith A. Widder Monitoring Bloom Dynamics of a Common Coastal Bioluminescent Ctenophore 2010 Aug Measurements and characterization of particle size distributions in coastal Journal of Geophysical Research R.A. Reynolds, D Stramski, V.M. Wright, S.B. Wozniak 2010 waters Sept Algae Industry Magazine A.I.M Interview with Dr. Danny Kainer Scale Up 2010 June Journal of Applied Phycology Pp 25-33 Takako Tanoi, Masanobu Kawachi, Makoto M. Watanabe Effects of carbon source on growth and morphology of Botryococcus braunii 2010 May T. M. Pedersen, Rodrigo Almeda, Frank L. Fotel, Hans Henrik Larval growth in the dominant polychaete Polydora ciliata is food-limited in a Marine Ecology Progress Series Pp 99-110 2010 Jakobsen, Patrizio Mariani, Benni W. Hansen eutrophic Danish estuary (Isefjord) UNESCO-IOC, ICES Working Group, HAB Dynamics, from the manual Microscopic and Molecular Methods Pp 47-54 2010 Nicole J. Poulton, Jennifer L. Martin Imaging flow cytometry for quantitative phytoplankton analysis – FlowCAM for Quantitative Phytoplankton Analysis. Alexander Barofsky, Paolo Simonelli, Charles Viodouez, Mar Growth phase of the diatom Skeletonema marinoi influences the metabolic Journal of Plankton Review Pp 263-272 Christofer T roedsson, Jens C. Nejstgaard, Hans H. Jakobsen, 2010 profile of the cells and the selective feeding of the copepod Calanus spp. Georg Pohnert Vol. 9, Issue 2: Pp 134- Feb Ana C. Garcia, Sibel Bargu, Padmanava Dash, Nancy N. Evaluating the potential risk of microcystins to blue crab (Callinectes sapidus) Harmful Algae 143 2010 Rabalais, Malinda Sutor fisheries and human health in a eutrophic estuary

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If you are interested in obtaining a copy of any of these publications, please contact Yokogawa Fluid Imaging Technologies at [email protected] and we will help you.

Publication Volume Date Authors Title Emerging Ballast Water Management Systems from the “Proceedings of the Jan New data experiments using viability stains on treated ballast water for IMO Pp 241-245 K. Peterson, H. Nelson IMO-WMU Research and Development 2010 compliance Forum” Dec Applicability of Fluorescein Diacetate (FDA) and Calcein-AM to Determine the Ocean and Polar Research Pp 349-357 Seung Ho Baek and Kyoungsoon Shin 2009 Viability of Marine Plankton American Water Works Association, Dec Phillip Tarrant, Tyler Sawyer, Rebecca Mestek and Susanne Feasibility Study for Early Warning Systems for Algae-induced Tastes & Odors Water Research Foundation 2009 Neuer

Dec A. Barofsky, P. Simonelli, C. Vidoudez, C. Troedsson, J. C. Growth phase of the diatom Skeletonema marinoi influences the metabolic Journal of Plankton Research Pp 1-10 2009 Nejstgarrd, H. H. Jakobsen, G. Pohnert profile of the cells and the selective feeding of the copepod Calanus spp. American Water Works Association Vol. 101 No. 11, Pp 19- Nov Benjamin W. Spaulding Field Report: Early Detection Can Help Eradicate Invasive Mussels Journal 20 2009 Feb Changes in plankton size structure and composition, during the generation of a Journal of Plankton Research Vol. 2, No. 2, Pp 193-207 L. Zarauz, X. Irigoien, J.A. Fernandes 2009 phytoplankton bloom, in the central Cantabrian sea Comparison of Fluorescence Correlation Spectrometry with the Ordinary Dec Analytical Sciences Vol. 24, Pp 1623-1627 Kitao Fujiwara, Shun Hirokawa, Motohide Aoki Fluorescence Optical Configuration with Flow Cytometry as a Tool for 2008 Micrometer-level Size Determination Dec How does eutrophication affect the role of grazers in harmful algal bloom Harmful Algae Pp 152-157 Edward J. Buskey 2008 dynamics? Nov-Dec Ocean Systems Pp 22-25 Nicole J. Poulton Testing ballast water for zooplankton 2008 Journal of Experimental Marine Sept Methods for sampling free-living Symbiodinium (zooxanthellae) and their Pp 48-53 Raechel A. Littman, Madeleine J.H. van Hoppen, Bette L. Willis Biology and Ecology 2008 distribution and abundance at Lizard Island (Great Barrier Reef) Vol. 30, No. 8, Pp 1297- Aug Effects of Lugol’s fixation on the size structure of natural nano‐microplankton Journal of Plankton Research L. Zarauz, X. Irigoien 130 2008 samples, analyzed by means of an automated counting method

Vol. 30, No. 8, Pp 857- Aug Modelling the influence of abiotic and biotic factors on plankton distribution in Journal of Plankton Research L. Zarauz, X. Irigoien, J.A. Fernandes 872 2008 the Bay of Biscay, during three consecutive years (2004–06)

Vol. 30, No. 4, Pp 467- Unai Cotano, Xabier Irigoien, Egoitz Etxebeste, Paula Alvarez, Distribution, growth and survival of anchovy larvae (Engraulis encrasicolus L.) in Journal of Plankton Research 2008 481 Julien Mader, L. Ferrer relation to hydrodynamic and trophic environment in the Bay of Biscay Vol. 30, No. 3, Pp 275- Keiichiro Ide, Kazutaka Takahashi, Akira Kuwata, Miwa Journal of Plankton Research 2008 A rapid analysis of copepod feeding using FlowCAM 281 Nakamachi, Hiroaki Saito American Water Works Association Nov Particle Imaging and Analysis Instrumentation Minimizes Taste and Odor Vol. 99 No. 11, Pp 50-54 Betsy Reilly-Matthews, PhD Journal 2007 Complaints Sept Mapping plankton distribution in the Bay of Biscay during three consecutive Marine Ecology Progress Series Vol. 345, Pp 37-39 L. Zarauz, X. Irigoien, A. Urtizberea, M. Gonzalez 2007 spring surveys

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FlowCam® Publications

If you are interested in obtaining a copy of any of these publications, please contact Yokogawa Fluid Imaging Technologies at [email protected] and we will help you.

Publication Volume Date Authors Title

Mark Benfield, Philippe Grosjean, Phil Culverhouse, Xabier Jun Irigoien, Michael Sieracki, Angel Lopez-Urrutia, Hans Dam, Oceanography Vol. 20, No. 2 Research of Automated Plankton Identification (RAPID) 2007 Qiao Hu, Cabell Davis, Allen Hansen, Cynthia Pilskaln, Edward Riseman, Howard Schultz, Paul Utgoff, Gabriel Gorsky Vol. 29, No. 2, Pp 115- Effects of the red tide dinoflagellate, Karenia brevis, on grazing and fecundity in Journal of Plankton Research 2007 C.F. Breier, E. J. Buskey 126 the copepod Acartia tonsa Dec Use of the FlowCAM® for semi-automated recognition and enumeration of red Harmful Algae Vol. 5, No. 6, Pp 685-692 Edward J. Buskey, Cammie J. Hyatt 2006 tide cells (Karenia brevis) in natural plankton samples Vol. 28, No.10, Pp 919- Marja Koski, Wim Breteler, Nelleke Schogt, Santiago Life-state-specific differences in exploitation of food mixtures: diet mixing Journal of Plankton Research 2006 936 Gonzalez, Hans Jakobsen enhances copepod egg production but not juvenile development Vol. 51, No. 5, Pp 2084- Elena San Martin, Xabier Irigoien, Roger P. Harris, Ángel Variation in the transfer of energy in marine plankton along a production Limnology and Oceanography 2006 2091 López-Urrutia, Mikhail V.Zubkov and Jane L. Sullivan gradient in the Atlantic Ocean Deep-Sea Research II Vol. 53, Pp 1560, 1572 2006 Elena San Martin, Roger P. Harris, Xabier Irigoien Latitudinal variation in plankton size spectra in the Atlantic Ocean Rolf R. Gradinger, Klaus Meiners, Gerry Plumley, Qing Zhang, Abundance and composition of the sea-ice meiofauna in off-shore pack ice of Polar Biology Vol. 28, Pp 171-181 2005 Bodil A. Bluhm the Beaufort Gyre in summer 2002 and 2003 Marine Scientist No. 16 Pp 10-13 2006 Watching out for toxic tides Apr LakeLine (NALMS) Pp 21-24 Hilary Snook, U.S. EPA A Regional Assessment Approach 2006 Matthew B. Blaschko, Gary Holness, Marwan A. Mattar, Dimitri Lisin, Paul E. Utgoff, Allen R. Hanson, Howard WACV-MOTION’05 Vol. 1, Pp 79-86 2005 Automatic in situ identification of plankton Schultz, Edward M. Riseman, Michael E. Sieracki, William M. Balch, Ben Tupper Jun Grazing by the calanoid copepod Neocalanus cristatis on the microbial food Journal of Plankton Research Vol. 27, Pp 647-662 Hongbin Liu, Michael J. Dagg, Suzanne Strom 2005 web in the coastal Gulf of Alaska Jason See, Lisa Campbell, Tammi L. Richardson, James L. Combining new technologies for determination of phytoplankton community Journal of Phycology Vol. 51 Pp 305-310 2005 Pickney, Ronjen Shen, Norman L. Guinasso, Jr. structure in the Northern Gulf of Mexico Vol. 26, No. 2, Pp 191- Robert D. Vaillancourt, Christopher W. Brown, Robert R. L. Light backscattering properties of marine phytoplankton: relationships to cell Journal of Plankton Research 2004 212 Guillard, William M. Balch size, chemical composition and taxonomy Lavrentyev P.J., M.J. McCarthy, D.M. Klarer, F.J. Jochem & Microbial Ecology Vol. 48 Pp 567-577 2004 Estuarine microbial food web patterns in a Lake Erie coastal wetland W.S. Gardner Michael C. Sterling, James S. Bonner, Andrew N.S. Ernest, Marine Pollution Bulletin 48 Pp 533-542 2004 Characterizing aquatic sediment-oil aggregates using in-situ instruments Cheryl A. Page, Robin A. Autenrieth Validation of Surface Bio-Optical Properties in the Gulf of Maine as a Means for SIMBIOS Project 2000 Annual Report Ch. 4, Pp 26-33 2000 W. M. Balch Improving Satellite Primary Production Estimates The Original FlowCAM Paper - Vol. 168, Pp 285-296 1998 Christian K. Sieracki, Michael E. Sieracki, Charles S. Yentsch An imaging-in-flow system for automated analysis of marine microplankton Marine Ecology Progress Series

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