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Relaxation 11/26/2020 | Page 2
RUPRECHT-KARLS- UNIVERSITY HEIDELBERG Computer Assisted Clinical Medicine Prof. Dr. Lothar Schad Master‘s Program in Medical Physics 11/26/2020 | Page 1 Physics of Imaging Systems Basic Principles of Magnetic Resonance Imaging III Prof. Dr. Lothar Schad Chair in Computer Assisted Clinical Medicine Faculty of Medicine Mannheim University of Heidelberg Theodor-Kutzer-Ufer 1-3 D-68167 Mannheim, Germany [email protected] www.ma.uni-heidelberg.de/inst/cbtm/ckm/ RUPRECHT-KARLS- UNIVERSITY HEIDELBERG Computer Assisted Clinical Medicine Prof. Dr. Lothar Schad Relaxation 11/26/2020 | Page 2 Relaxation Seite 1 1 RUPRECHT-KARLS- UNIVERSITY HEIDELBERG Computer Assisted Clinical Medicine Prof. Dr. Lothar Schad Magnetization: M and M 11/26/2020 | Page 3 z xy longitudinal magnetization: Mz transversal magnetization: Mxy transversal magnetization: Mxy - phase synchronization after a 90°-pulse - the magnetic moments of the probe start to precede around B1 leading to a synchronization of spin packages → Mxy - after 90°-pulse Mxy = M0 RUPRECHT-KARLS- UNIVERSITY HEIDELBERG Computer Assisted Clinical Medicine Prof. Dr. Lothar Schad Movie: M and M 11/26/2020 | Page 4 z xy source: Schlegel and Mahr. “3D Conformal Radiation Therapy: A Multimedia Introduction to Methods and Techniques" 2007 Seite 2 2 RUPRECHT-KARLS- UNIVERSITY HEIDELBERG Computer Assisted Clinical Medicine Prof. Dr. Lothar Schad Longitudinal Relaxation Time: T1 11/26/2020 | Page 5 thermal equilibrium excited state after 90°-pulse: -N-1/2 = N+1/2 and Mz = 0, Mxy = M0 after RF switched off: - magnetization turns back to thermal equilibrium - Mz = M0, Mxy = 0 → T1 relaxation longitudinal relaxation time T1 spin-lattice-relaxation time T1 RUPRECHT-KARLS- UNIVERSITY HEIDELBERG Computer Assisted Clinical Medicine Prof. -
Evaluation of Aqueductal Stenosis by 3D
Published December 15, 2011 as 10.3174/ajnr.A2833 Evaluation of Aqueductal Stenosis by 3D Sampling Perfection with Application-Optimized Contrasts Using Different Flip Angle Evolutions Sequence: Preliminary Results with 3T MR ORIGINAL RESEARCH Imaging O. Algin BACKGROUND AND PURPOSE: Diagnosis of AS and periaqueductal abnormalities by routine MR imag- B. Turkbey ing sequences is challenging for neuroradiologists. The aim of our study was to evaluate the utility of the 3D-SPACE sequence with VFAM in patients with suspected AS. MATERIALS AND METHODS: PC-MRI and 3D-SPACE images were obtained in 21 patients who had hydrocephalus on routine MR imaging scans and had clinical suspicion of AS, as well as in 12 control subjects. Aqueductal patency was visually scored (grade 0, normal; grade 1, partial obstruction; grade 2, complete stenosis) by 2 experienced radiologists on PC-MRI (plus routine T1-weighted and T2- weighted images) and 3D-SPACE images. Two separate scores were statistically compared with each other as well as with the consensus scores obtained from general agreement of both radiologists. RESULTS: There was an excellent correlation between 3D-SPACE and PC-MRI scores ( ϭ 0.828). The correlation between 3D-SPACE scorings and consensus-based scorings was higher compared with the correlation between PC-MRI and consensus-based scorings (r ϭ 1, P Ͻ .001 and r ϭ 0.966, P Ͻ .001, respectively). CONCLUSIONS: 3D-SPACE sequence with VFAM alone can be used for adequate and successful evaluation of the aqueductal patency without the need for additional sequences and examinations. Noninvasive evaluation of the whole cranium is possible in a short time with high resolution by using 3D-SPACE. -
Unprecedented Echo Times for Diffusion MRI Using Connectom Gradients, Spiral Readouts and Field Monitoring
MAGNETOM Flash (74) 3/2019 Neurology · Clinical Unprecedented Echo Times for Diffusion MRI Using Connectom Gradients, Spiral Readouts and Field Monitoring Lars Mueller; Chantal MW Tax; Derek K Jones Cardiff University Brain Research Imaging Centre (CUBRIC), Cardiff, UK The challenge of diffusion MRI Summary The introduction of diffusion-weighted imaging [3] • Using a unique combination of the ultra-strong into the armoury of quantitative MRI techniques, has (300 mT/m) magnetic field gradients provided revolutionised our understanding of tissue properties on the MAGNETOM Connectom1 scanner, a in vivo across a wide range of organs. Characterizing the diffusion-weighted MRI sequence with spiral anisotropic diffusion of water in tissue, allows properties EPI read-out, and a field camera to monitor and such as density, shape, size, and orientation of different correct for deviations from prescribed k-space tissue compartments to be inferred [e.g., 1, 2, 6, 9]. trajectories, we present high quality images with unprecedented short echo times for diffusion A successful diffusion MRI sequence has two key MRI in the living human brain components: • For b = 1000 s/mm2, the echo time is 21.7 ms 1. The application of sufficient diffusion-weighting • These short echo times confer two advantages: (through the application of magnetic field gradients • Enhanced signal to noise ratio (SNR) due to for a finite duration) that makes the sequence reduced T2-weighted signal loss (which makes sensitive to microscopic displacements. measurement of tissue with short T2, e.g., 2. A very rapid read-out of the image, to effectively muscle, more robust) ‘freeze’ the physiological motion (macroscopic • Sensitivity to species previously ‘invisible’ in displacements) that would otherwise corrupt the diffusion MRI, e.g., the myelin water, opening diffusion-weighted image. -
A Simulation Study Investigating Potential Diffusion-Based MRI Signatures of Microstrokes
bioRxiv preprint doi: https://doi.org/10.1101/2020.08.19.257741; this version posted August 20, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. A Simulation Study Investigating Potential Diffusion-based MRI Signatures of Microstrokes Rafat Damseh1,2*, Yuankang Lu1,2, Xuecong Lu1,2, Cong Zhang2,3, Paul J. Marchand1,2, Denis Corbin1, Philippe Pouliot1,2, Farida Cheriet4, and Frederic Lesage1,2 1Laboratory of Optical and Molecular Imaging, Ecole´ Polytechnique de Montreal,´ 2900 Edouard Montpetit Blvd, Montreal´ (Quebec),´ Canada, H3T 1J4 2Montreal Heart Institute, 5000 Rue Belanger,´ Montreal´ (Quebec),´ Canada, H1T 1C8 3Universite´ de Montreal, 2900 Edouard Montpetit Blvd, Montreal´ (Quebec),´ Canada, H3T 1J4 4Department of Computer and Software Engineering, Ecole´ Polytechnique de Montreal,´ 2900 Edouard Montpetit Blvd, Montreal´ (Quebec),´ Canada, H3T 1J4 *[email protected] ABSTRACT Recent studies suggested that cerebrovascular micro-occlusions , i.e. microstokes, could lead to ischemic tissue infarctions and cognitive deficits. Due to their small size, identifying measurable biomarkers of these microvascular lesions remains a major challenge. This work aims to simulate potential MRI signatures combining arterial spin labeling (ASL) and multi-directional diffusion-weighted imaging (DWI). Driving our hypothesis are recent observations demonstrating a radial reorientation of microvasculature around the micro-infarction locus during recovery in mice. Synthetic capillary beds, randomly- and radially- oriented, and optical coherence tomography (OCT) angiograms, acquired in the barrel cortex of mice (n=5) before and after inducing targeted photothrombosis, were analyzed. -
MRI-Derived Measurements of Human Subcortical, Ventricular
NeuroImage 46 (2009) 177–192 Contents lists available at ScienceDirect NeuroImage journal homepage: www.elsevier.com/locate/ynimg MRI-derived measurements of human subcortical, ventricular and intracranial brain volumes: Reliability effects of scan sessions, acquisition sequences, data analyses, scanner upgrade, scanner vendors and field strengths Jorge Jovicich a,⁎, Silvester Czanner b, Xiao Han c, David Salat d,e, Andre van der Kouwe d,e, Brian Quinn d,e, Jenni Pacheco d,e, Marilyn Albert h, Ronald Killiany i, Deborah Blacker g, Paul Maguire j, Diana Rosas d,e,f, Nikos Makris d,e,k, Randy Gollub d,e, Anders Dale l, Bradford C. Dickerson d,f,g,m,1, Bruce Fischl d,e,n,1 a Center for Mind–Brain Sciences, Department of Cognitive and Education Sciences, University of Trento, Italy b Warwick Manufacturing Group, School of Engineering, University of Warwick, UK c CMS, Inc., St. Louis, MO, USA d Athinoula A. Martinos Center for Biomedical Imaging, USA e Department of Radiology, Massachusetts General Hospital and Harvard Medical School, Boston, MA, USA f Department of Neurology, Massachusetts General Hospital and Harvard Medical School, Boston, MA, USA g Gerontology Research Unit, Department of Psychiatry, Massachusetts General Hospital and Harvard Medical School, Boston, MA, USA h Department of Neurology, Johns Hopkins University School of Medicine, USA i Department of Anatomy and Neurobiology, Boston University School of Medicine, USA j Pfizer Global Research and Development, Groton, CT, USA k Center for Morphometric Analysis, Massachusetts General Hospital, Boston, MA, USA l University of California San Diego, CA, USA m Division of Cognitive and Behavioral Neurology, Department of Neurology, Brigham and Women's Hospital, Boston, MA, USA n CSAIL/HST, MIT, Cambridge, MA, USA article info abstract Article history: Automated MRI-derived measurements of in-vivo human brain volumes provide novel insights into normal Received 19 August 2008 and abnormal neuroanatomy, but little is known about measurement reliability. -
Proton Relaxation Times in Paramagnetic Solutions. Effects of Electron Spin Relaxation N
Proton Relaxation Times in Paramagnetic Solutions. Effects of Electron Spin Relaxation N. Bloembergen and L. O. Morgan Citation: The Journal of Chemical Physics 34, 842 (1961); doi: 10.1063/1.1731684 View online: http://dx.doi.org/10.1063/1.1731684 View Table of Contents: http://scitation.aip.org/content/aip/journal/jcp/34/3?ver=pdfcov Published by the AIP Publishing This article is copyrighted as indicated in the abstract. Reuse of AIP content is subject to the terms at: http://scitation.aip.org/termsconditions. Downloaded to IP: 75.183.112.71 On: Fri, 29 Nov 2013 20:41:28 842 L. C. SNYDER AND R. G. PARR cause the computed value of the property to depend of the test magnetic dipole. The presence of these on the origin taken for the vector potential. It also difficulties in the perturbation method should en is clear that caution must be exercised in applying sum courage the continued investigation of variation or 13 17 rules to estimate the excited state parts. With a single other methods - as the way to achieve quantitative average excited state energy the excited state part of computation of the magnetic properties of molecules. the magnetic susceptibility for a hydrogen atom can be ,estimated for any origin of the vector potential. How J3 M. J. Stephen, Proc. Roy. Soc. (London) A242, 264 (1957). ever, no single average excited state energy can give a J4 B. R. McGarvey, J. Chem. Phys. 27, 68 (1957). correct sum rule estimate of the excited state contribu J. J. A. Pople, Proc. -
Black Bone” Sequence to a Fast Multisequence Trauma MR Protocol Allow MRI to Replace CT After Traumatic Brain Injury in Children?
ORIGINAL RESEARCH PEDIATRICS Does the Addition of a “Black Bone” Sequence to a Fast Multisequence Trauma MR Protocol Allow MRI to Replace CT after Traumatic Brain Injury in Children? X M.H.G. Dremmen, X M.W. Wagner, X T. Bosemani, X A. Tekes, X D. Agostino, X E. Day, X B.P. Soares, and X T.A.G.M. Huisman ABSTRACT BACKGROUND AND PURPOSE: Head CT is the current neuroimaging tool of choice in acute evaluation of pediatric head trauma. The potential cancer risks of CT-related ionizing radiation should limit its use in children. We evaluated the role of MR imaging, including a “black bone” sequence, compared with CT in detecting skull fractures and intracranial hemorrhages in children with acute head trauma. MATERIALS AND METHODS: We performed a retrospective evaluation of 2D head CT and brain MR imaging studies including the black bone sequence of children with head trauma. Two experienced pediatric neuroradiologists in consensus created the standard of refer- ence. Another pediatric neuroradiologist blinded to the diagnosis evaluated brain MR images and head CT images in 2 separate sessions. The presence of skull fractures and intracranial posttraumatic hemorrhages was evaluated. We calculated the sensitivity and specificity of CT and MR imaging with the black bone sequence in the diagnosis of skull fractures and intracranial hemorrhages. RESULTS: Twenty-eight children (24 boys; mean age, 4.89 years; range, 0–15.5 years) with head trauma were included. MR imaging with the black bone sequence revealed lower sensitivity (66.7% versus 100%) and specificity (87.5% versus 100%) in identifying skull fractures. -
The Appropriate Use of Neuroimaging in the Diagnostic Work-Up of Dementia: an Evidence-Based Analysis
The Appropriate Use of Neuroimaging in the Diagnostic Work-Up of Dementia: An Evidence-Based Analysis Health Quality Ontario February 2014 Ontario Health Technology Assessment Series; Vol. 14: No. 1, pp. 1–64, February 2014 Suggested Citation This report should be cited as follows: Health Quality Ontario. The appropriate use of neuroimaging in the diagnostic work-up of dementia: an evidence- based analysis. Ont Health Technol Assess Ser [Internet]. 2014 February;14(1):1–64. Available from: http://www.hqontario.ca/evidence/publications-and-ohtac-recommendations/ontario-health-technology-assessment- series/imaging-for-dementia. Permission Requests All inquiries regarding permission to reproduce any content in the Ontario Health Technology Assessment Series should be directed to: [email protected]. How to Obtain Issues in the Ontario Health Technology Assessment Series All reports in the Ontario Health Technology Assessment Series are freely available in PDF format at the following URL: http://www.hqontario.ca/evidence/publications-and-ohtac-recommendations/ontario-health-technology- assessment-series. Indexing The Ontario Health Technology Assessment Series is currently indexed in MEDLINE/PubMed, Excerpta Medica/Embase, and the Centre for Reviews and Dissemination database. Conflict of Interest Statement All authors in the Ontario Health Technology Assessment Series are impartial. There are no competing interests or conflicts of interest to declare. Peer Review All reports in the Ontario Health Technology Assessment Series are subject to external expert peer review. Additionally, Health Quality Ontario posts draft reports and recommendations on its website for public comment prior to publication. For more information, please visit: http://www.hqontario.ca/en/mas/ohtac_public_engage_overview.html. -
NMR Experiments for Structure Determination
NMR Experiments for Structure Determination Dr Michael Thrippleton Introduction Nuclear Overhauser Effect (NOE) J-coupling •through space •through bond •J-spectroscopy •1D NOE •DQF COSY •2D NOESY •z-COSY •ROESY •HMBC The NOE Self-Relaxation pulse(s) relaxation Relaxation is the process by which magnetisation returns to equilibrium • longitudinal relaxation rate R1 • Transverse relaxation rate R2 The NOE Inversion recovery τ Magnetisation returns to +z axis during at rate R 1 •figures reproduced from Understanding NMR spectroscopy , by James Keeler The NOE Cross-relaxation The NOE Cross-relaxation Perturbation of spin I from equilibrium causes spin S to grow/shrink σ • cross-relaxation rate constant 12 • spins must be close in space The NOE Transient NOE •Target spin inverted and allowed to relax to equilibrium •Cross-relaxation generates NOE on neighbouring spin “mixing time” irradiated spectrum − Sirr Sref reference spectrum η = Sref difference spectrum NOE enhancement •figures reproduced from Understanding NMR spectroscopy , by James Keeler The NOE Transient NOE irradiated spin difference spectrum reference spectrum •figures reproduced from Stott et al., J. Magn. Reson. 125 , 302-324 The NOE NOESY •2D version of 1D transient NOE •takes longer, but contains more information •row from NOESY looks like 1D experiment •spectrum reproduced from Understanding NMR spectroscopy , by James Keeler The NOE Relaxation Mechanisms •Dipole-dipole coupling nearly averaged out by molecular tumbling •Remainder responsible for relaxation τ •Rate depends on timescale of motion c and distance between spins ( r-6 ) Small molecules, e.g. quinine τ •rapid motion / short c Large molecules, e.g. proteins τ tumbling •slow motion / long c The NOE How big, how fast? ω τ = 5 “zero crossing” 0 c 4 •slow / absent for v. -
Diagnosis of Meningitis Caused by Pathogenic Microorganisms Using Magnetic Resonance Imaging: a Systematic Review.Basic and Clinical Neuro- Science, 9(2), 73-86
Basic and Clinical March, April 2018, Volume 9, Number 2 Review Paper: Diagnosis of Meningitis Caused by Pathogen- ic Microorganisms Using Magnetic Resonance Imaging: A Systematic Review Alia Saberi1, Seyed-Ali Roudbary2, Amirreza Ghayeghran2, Samaneh Kazemi3* , Mozaffar Hosseininezhad2 1. Neurosciences Research Center, Department of Neurology, Pouursina Hospital, School of Medicine, Guilan University of Medical Sciences, Rasht, Iran. 2. Department of Neurology, Poursina Hospital, School of Medicine, Guilan University of Medical Sciences, Rasht, Iran. 3. Deputy of Research and Technology, Guilan University of Medical Sciences, Rasht, Iran. Use your device to scan and read the article online Citation: Saberi, A., Roudbary, S. A., Ghayeghran, A., Kazemi, S., & Hosseininezhad, M. (2018). Diagnosis of Meningitis Caused by Pathogenic Microorganisms Using Magnetic Resonance Imaging: A Systematic Review.Basic and Clinical Neuro- science, 9(2), 73-86. https://doi.org/10.29252/nirp.bcn.9.2.73 : https://doi.org/10.29252/nirp.bcn.9.2.73 Article info: A B S T R A C T Received: 02 September 2017 First Revision: 27 September 2017 Introduction: Bacterial meningitis is an acute infectious inflammation of the protective Accepted: 10 November 2017 membranes covering the brain. Its early diagnosis is vital because of its high morbidity and mortality. It is mostly diagnosed by a gold standard diagnostic tool i.e. Cerebrospinal Fluid (CSF) analysis. However, it is sometimes difficult and or impossible to do this procedure and an alternative diagnostic tool is needed. Contrast enhanced magnetic resonance imaging can detect the pus or other changes in subarachnoid space. But our optimal aim is to use an imaging method without using contrast to be useable and available in more specific condition. -
Optical Detection of NMR J-Spectra at Zero Magnetic Field
1 Optical detection of NMR J-spectra at zero magnetic field M. P. Ledbetter1, C. W. Crawford2, A. Pines2,3, D. E. Wemmer2, S. Knappe4, J. Kitching4, and D. Budker1,5 1Department of Physics, University of California at Berkeley, Berkeley, California 94720-7300 USA, 2Department of Chemistry, University of California, Berkeley, California 94720 USA, 3Materials Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720 USA, 4Time and Frequency Division, National Institute of Standards and Technology, 325 Broadway, Boulder, Colorado, 80305 USA, 5Nuclear Science Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720,USA Scalar couplings of the form JI1·I2 between nuclei impart valuable information about molecular structure to nuclear magnetic-resonance spectra. Here we demonstrate direct detection of J-spectra due to both heteronuclear and homonuclear J-coupling in a zero-field environment where the Zeeman interaction is completely absent. We show that characteristic functional groups exhibit distinct spectra with straightforward interpretation for chemical identification. Detection is performed with a microfabricated optical atomic magnetometer, providing high sensitivity to samples of microliter volumes. We obtain 0.1 Hz linewidths and measure scalar-coupling parameters with 4-mHz statistical uncertainty. We anticipate that the technique described here will provide a new modality for high-precision “J spectroscopy” using small samples on microchip devices for multiplexed screening, assaying, and sample identification in chemistry and biomedicine. 2 Nuclear magnetic resonance (NMR) endures as one of the most powerful analytical tools for detecting chemical species and elucidating molecular structure. The fingerprints for identification and structure analysis are chemical shifts and scalar couplings (1,2) of the form JI1 ·I2. -
Spin-Lattice Relaxation Times Reading Assignment
Spin-Lattice Relaxation Times Reading Assignment : T. D. W. Claridge, High Resolution NMR Techniques in Organic Chemistry , Chapter 2; E. Breitmaier, W. Voelter, Carbon 13 NMR Spectroscopy,3rd Ed., 3.3.2. Purpose Use the inversion recovery method to measure the T 1 relaxation times for the different chemical environments in a molecule. The T 1 values will be used to assess motion in different parts of the molecule. Introduction Spin-Lattice Relaxation When molecules absorb light they are transferred from lower energy states to higher energy states. This leaves the system out of equilibrium, and the system must undergo transitions from the upper states to lower states to get back to equilibrium. This process is illustrated in Figure 1. For nuclear magnetic resonance of protons, the energy level diagram has two energy levels, the lower state with protons "spin up", or aligned with the external field, and the higher state with protons "spin down", or aligned against the external field. Light in the radiofrequency region of the spectrum causes protons to "flip", or jump to higher energy levels. The process whereby the system returns to equilibrium involves spin flips to return to the lower energy state, and the excess energy is lost to the surroundings in the form of heat. The surroundings in magnetic resonance experiments is called the "lattice", therefore the name spin- lattice relaxation. The characteristic life-time of a spin in the upper state is called the spin-lattice relaxation time T 1. T 1 is the average length of time that a proton remains in the same energy level.