D. Michael P. Mingos Editor 100 Years Old and Getting Stronger
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Organometallic Chemistry from the Interacting Quantum Atoms Approach
CORSO DI DOTTORATO DI RICERCA IN SCIENZE CHIMICHE CICLO XXIII TESI DI DOTTORATO DI RICERCA ORGANOMETALLIC CHEMISTRY FROM THE INTERACTING QUANTUM ATOMS APPROACH sigla del settore scientifico disciplinare CHIM03 NOME DEL TUTOR NOME DEL DOTTORANDO Prof: Angelo Sironi Davide Tiana NOME DEL COORDINATORE DEL DOTTORATO Prof. Silvia Ardizzone ANNO ACCADEMICO 2009/2010 1 2 Index Introduction ............................................................................................................................................................................ 5 The ligand field theory (LFT) .................................................................................................................................... 5 The chemistry from a real space point of view ................................................................................................. 9 Chapter 1: The quantum theory of atoms in molecules (QTAM) ............................................................... 12 Topological analysis of electron charge density ........................................................................................... 12 Analysis of the electronic charge density Laplacian ................................................................................... 16 Other properties ........................................................................................................................................................... 18 Chapter 2: The interacting quantum atoms theory (IQA) ............................................................................ -
Clusters – Contemporary Insight in Structure and Bonding 174 Structure and Bonding
Structure and Bonding 174 Series Editor: D.M.P. Mingos Stefanie Dehnen Editor Clusters – Contemporary Insight in Structure and Bonding 174 Structure and Bonding Series Editor: D.M.P. Mingos, Oxford, United Kingdom Editorial Board: X. Duan, Beijing, China L.H. Gade, Heidelberg, Germany Y. Lu, Urbana, IL, USA F. Neese, Mulheim€ an der Ruhr, Germany J.P. Pariente, Madrid, Spain S. Schneider, Gottingen,€ Germany D. Stalke, Go¨ttingen, Germany Aims and Scope Structure and Bonding is a publication which uniquely bridges the journal and book format. Organized into topical volumes, the series publishes in depth and critical reviews on all topics concerning structure and bonding. With over 50 years of history, the series has developed from covering theoretical methods for simple molecules to more complex systems. Topics addressed in the series now include the design and engineering of molecular solids such as molecular machines, surfaces, two dimensional materials, metal clusters and supramolecular species based either on complementary hydrogen bonding networks or metal coordination centers in metal-organic framework mate- rials (MOFs). Also of interest is the study of reaction coordinates of organometallic transformations and catalytic processes, and the electronic properties of metal ions involved in important biochemical enzymatic reactions. Volumes on physical and spectroscopic techniques used to provide insights into structural and bonding problems, as well as experimental studies associated with the development of bonding models, reactivity pathways and rates of chemical processes are also relevant for the series. Structure and Bonding is able to contribute to the challenges of communicating the enormous amount of data now produced in contemporary research by producing volumes which summarize important developments in selected areas of current interest and provide the conceptual framework necessary to use and interpret mega- databases. -
Planar Cyclopenten‐4‐Yl Cations: Highly Delocalized Π Aromatics
Angewandte Research Articles Chemie How to cite: Angew.Chem. Int. Ed. 2020, 59,18809–18815 Carbocations International Edition: doi.org/10.1002/anie.202009644 German Edition: doi.org/10.1002/ange.202009644 Planar Cyclopenten-4-yl Cations:Highly Delocalized p Aromatics Stabilized by Hyperconjugation Samuel Nees,Thomas Kupfer,Alexander Hofmann, and Holger Braunschweig* 1 B Abstract: Theoretical studies predicted the planar cyclopenten- being energetically favored by 18.8 kcalmolÀ over 1 (MP3/ 4-yl cation to be aclassical carbocation, and the highest-energy 6-31G**).[11–13] Thebishomoaromatic structure 1B itself is + 1 isomer of C5H7 .Hence,its existence has not been verified about 6–14 kcalmolÀ lower in energy (depending on the level experimentally so far.Wewere now able to isolate two stable of theory) than the classical planar structure 1C,making the derivatives of the cyclopenten-4-yl cation by reaction of bulky cyclopenten-4-yl cation (1C)the least favorable isomer.Early R alanes Cp AlBr2 with AlBr3.Elucidation of their (electronic) solvolysis studies are consistent with these findings,with structures by X-raydiffraction and quantum chemistry studies allylic 1A being the only observable isomer, notwithstanding revealed planar geometries and strong hyperconjugation the nature of the studied cyclopenteneprecursor.[14–18] Thus, interactions primarily from the C Al s bonds to the empty p attempts to generate isomer 1C,orits homoaromatic analog À orbital of the cationic sp2 carbon center.Aclose inspection of 1B,bysolvolysis of 4-Br/OTs-cyclopentene -
NBO Applications, 2020
NBO Bibliography 2020 2531 publications – Revised and compiled by Ariel Andrea on Aug. 9, 2021 Aarabi, M.; Gholami, S.; Grabowski, S. J. S-H ... O and O-H ... O Hydrogen Bonds-Comparison of Dimers of Thiocarboxylic and Carboxylic Acids Chemphyschem, (21): 1653-1664 2020. 10.1002/cphc.202000131 Aarthi, K. V.; Rajagopal, H.; Muthu, S.; Jayanthi, V.; Girija, R. Quantum chemical calculations, spectroscopic investigation and molecular docking analysis of 4-chloro- N-methylpyridine-2-carboxamide Journal of Molecular Structure, (1210) 2020. 10.1016/j.molstruc.2020.128053 Abad, N.; Lgaz, H.; Atioglu, Z.; Akkurt, M.; Mague, J. T.; Ali, I. H.; Chung, I. M.; Salghi, R.; Essassi, E.; Ramli, Y. Synthesis, crystal structure, hirshfeld surface analysis, DFT computations and molecular dynamics study of 2-(benzyloxy)-3-phenylquinoxaline Journal of Molecular Structure, (1221) 2020. 10.1016/j.molstruc.2020.128727 Abbenseth, J.; Wtjen, F.; Finger, M.; Schneider, S. The Metaphosphite (PO2-) Anion as a Ligand Angewandte Chemie-International Edition, (59): 23574-23578 2020. 10.1002/anie.202011750 Abbenseth, J.; Goicoechea, J. M. Recent developments in the chemistry of non-trigonal pnictogen pincer compounds: from bonding to catalysis Chemical Science, (11): 9728-9740 2020. 10.1039/d0sc03819a Abbenseth, J.; Schneider, S. A Terminal Chlorophosphinidene Complex Zeitschrift Fur Anorganische Und Allgemeine Chemie, (646): 565-569 2020. 10.1002/zaac.202000010 Abbiche, K.; Acharjee, N.; Salah, M.; Hilali, M.; Laknifli, A.; Komiha, N.; Marakchi, K. Unveiling the mechanism and selectivity of 3+2 cycloaddition reactions of benzonitrile oxide to ethyl trans-cinnamate, ethyl crotonate and trans-2-penten-1-ol through DFT analysis Journal of Molecular Modeling, (26) 2020. -
An Analysis of Electrophilic Aromatic Substitution: a “Complex Approach” PCCP
Volume 23 Number 9 7 March 2021 Pages 5033–5682 PCCP Physical Chemistry Chemical Physics rsc.li/pccp ISSN 1463-9076 PERSPECTIVE Janez Cerkovnik et al . An analysis of electrophilic aromatic substitution: a “complex approach” PCCP View Article Online PERSPECTIVE View Journal | View Issue An analysis of electrophilic aromatic substitution: a ‘‘complex approach’’† Cite this: Phys. Chem. Chem. Phys., a a b 2021, 23, 5051 Nikola Stamenkovic´, Natasˇa Poklar Ulrih and Janez Cerkovnik * Electrophilic aromatic substitution (EAS) is one of the most widely researched transforms in synthetic organic chemistry. Numerous studies have been carried out to provide an understanding of the nature of its reactivity pattern. There is now a need for a concise and general, but detailed and up-to-date, overview. The basic principles behind EAS are essential to our understanding of what the mechanisms underlying EAS are. To date, textbook overviews of EAS have provided little information about the Received 5th October 2020, mechanistic pathways and chemical species involved. In this review, the aim is to gather and present the Accepted 21st December 2020 up-to-date information relating to reactivity in EAS, with the implication that some of the key concepts DOI: 10.1039/d0cp05245k will be discussed in a scientifically concise manner. In addition, the information presented herein suggests certain new possibilities to advance EAS theory, with particular emphasis on the role of modern Creative Commons Attribution-NonCommercial 3.0 Unported Licence. rsc.li/pccp -
Proton-Coupled Reduction of N2 Facilitated by Molecular Fe Complexes
Proton-Coupled Reduction of N2 Facilitated by Molecular Fe Complexes Thesis by Jonathan Rittle In Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy CALIFORNIA INSTITUTE OF TECHNOLOGY Pasadena, California 2016 (Defended November 9, 2015) ii 2016 Jonathan Rittle All Rights Reserved iii ACKNOWLEDGEMENTS My epochal experience in graduate school has been marked by hard work, intellectual growth, and no shortage of deadlines. These facts leave little opportunity for an acknowledgement of those whose efforts were indispensable to my progress and perseverance, and are therefore disclosed here. First and foremost, I would like to thank my advisor, Jonas Peters, for his tireless efforts in molding me into the scientist that I am today. His scientific rigor has constantly challenged me to strive for excellence and I am grateful for the knowledge and guidance he has provided. Jonas has given me the freedom to pursue scientific research of my choosing and shown a remarkable degree of patience while dealing with my belligerent tendencies. Perhaps equally important, Jonas has built a research group that is perpetually filled with the best students and postdoctoral scholars. Their contributions to my graduate experience are immeasurable and I wish them all the best of luck in their future activities. In particular, John Anderson, Dan Suess, and Ayumi Takaoka were senior graduate students who took me under their wings when I joined the lab as a naïve first-year graduate student. I am grateful for the time and effort that they collectively spent in teaching me the art of chemical synthesis and for our unforgettable experiences outside of lab. -
FAROOK COLLEGE (Autonomous)
FAROOK COLLEGE (Autonomous) M.Sc. DEGREE PROGRAMME IN CHEMISTRY CHOICE BASED CREDIT AND SEMESTER SYSTEM-PG (FCCBCSSPG-2019) SCHEME AND SYLLABI 2019 ADMISSION ONWARDS 1 CERTIFICATE I hereby certify that the documents attached are the bona fide copies of the syllabus of M.Sc. Chemistry Programme to be effective from the academic year 2019-20 onwards. Date: Place: P R I N C I P A L 2 FAROOK COLLEGE (AUTONOMOUS) MSc. CHEMISTRY (CSS PATTERN) Regulations and Syllabus with effect from 2019 admission Pattern of the Programme a. The name of the programme shall be M.Sc. Chemistry under CSS pattern. b. The programme shall be offered in four semesters within a period of two academic years. c. Eligibility for admission will be as per the rules laid down by the College from time to time. d. Details of the courses offered for the programme are given in Table 1. The programme shall be conducted in accordance with the programme pattern, scheme of examination and syllabus prescribed. Of the 25 hours per week, 13 hours shall be allotted for theory and 12 hours for practical; 1 theory hour per week during even semesters shall be allotted for seminar. Theory Courses In the first three semesters, there will be four theory courses; and in the fourth semester, three theory courses. All the theory courses in the first and second semesters are core courses. In the third semester there will be three core theory courses and one elective theory course. College can choose any one of the elective courses given in Table 1. -
Organometrallic Chemistry
CHE 425: ORGANOMETALLIC CHEMISTRY SOURCE: OPEN ACCESS FROM INTERNET; Striver and Atkins Inorganic Chemistry Lecturer: Prof. O. G. Adeyemi ORGANOMETALLIC CHEMISTRY Definitions: Organometallic compounds are compounds that possess one or more metal-carbon bond. The bond must be “ionic or covalent, localized or delocalized between one or more carbon atoms of an organic group or molecule and a transition, lanthanide, actinide, or main group metal atom.” Organometallic chemistry is often described as a bridge between organic and inorganic chemistry. Organometallic compounds are very important in the chemical industry, as a number of them are used as industrial catalysts and as a route to synthesizing drugs that would not have been possible using purely organic synthetic routes. Coordinative unsaturation is a term used to describe a complex that has one or more open coordination sites where another ligand can be accommodated. Coordinative unsaturation is a very important concept in organotrasition metal chemistry. Hapticity of a ligand is the number of atoms that are directly bonded to the metal centre. Hapticity is denoted with a Greek letter η (eta) and the number of bonds a ligand has with a metal centre is indicated as a superscript, thus η1, η2, η3, ηn for hapticity 1, 2, 3, and n respectively. Bridging ligands are normally preceded by μ, with a subscript to indicate the number of metal centres it bridges, e.g. μ2–CO for a CO that bridges two metal centres. Ambidentate ligands are polydentate ligands that can coordinate to the metal centre through one or more atoms. – – – For example CN can coordinate via C or N; SCN via S or N; NO2 via N or N. -
Chemical Bonding II: Molecular Shapes, Valence Bond Theory, and Molecular Orbital Theory Review Questions
Chemical Bonding II: Molecular Shapes, Valence Bond Theory, and Molecular Orbital Theory Review Questions 10.1 J The properties of molecules are directly related to their shape. The sensation of taste, immune response, the sense of smell, and many types of drug action all depend on shape-specific interactions between molecules and proteins. According to VSEPR theory, the repulsion between electron groups on interior atoms of a molecule determines the geometry of the molecule. The five basic electron geometries are (1) Linear, which has two electron groups. (2) Trigonal planar, which has three electron groups. (3) Tetrahedral, which has four electron groups. (4) Trigonal bipyramid, which has five electron groups. (5) Octahedral, which has six electron groups. An electron group is defined as a lone pair of electrons, a single bond, a multiple bond, or even a single electron. H—C—H 109.5= ijj^^jl (a) Linear geometry \ \ (b) Trigonal planar geometry I Tetrahedral geometry I Equatorial chlorine Axial chlorine "P—Cl: \ Trigonal bipyramidal geometry 1 I Octahedral geometry I 369 370 Chapter 10 Chemical Bonding II The electron geometry is the geometrical arrangement of the electron groups around the central atom. The molecular geometry is the geometrical arrangement of the atoms around the central atom. The electron geometry and the molecular geometry are the same when every electron group bonds two atoms together. The presence of unbonded lone-pair electrons gives a different molecular geometry and electron geometry. (a) Four electron groups give tetrahedral electron geometry, while three bonding groups and one lone pair give a trigonal pyramidal molecular geometry. -
Bond Distances and Bond Orders in Binuclear Metal Complexes of the First Row Transition Metals Titanium Through Zinc
Metal-Metal (MM) Bond Distances and Bond Orders in Binuclear Metal Complexes of the First Row Transition Metals Titanium Through Zinc Richard H. Duncan Lyngdoh*,a, Henry F. Schaefer III*,b and R. Bruce King*,b a Department of Chemistry, North-Eastern Hill University, Shillong 793022, India B Centre for Computational Quantum Chemistry, University of Georgia, Athens GA 30602 ABSTRACT: This survey of metal-metal (MM) bond distances in binuclear complexes of the first row 3d-block elements reviews experimental and computational research on a wide range of such systems. The metals surveyed are titanium, vanadium, chromium, manganese, iron, cobalt, nickel, copper, and zinc, representing the only comprehensive presentation of such results to date. Factors impacting MM bond lengths that are discussed here include (a) n+ the formal MM bond order, (b) size of the metal ion present in the bimetallic core (M2) , (c) the metal oxidation state, (d) effects of ligand basicity, coordination mode and number, and (e) steric effects of bulky ligands. Correlations between experimental and computational findings are examined wherever possible, often yielding good agreement for MM bond lengths. The formal bond order provides a key basis for assessing experimental and computationally derived MM bond lengths. The effects of change in the metal upon MM bond length ranges in binuclear complexes suggest trends for single, double, triple, and quadruple MM bonds which are related to the available information on metal atomic radii. It emerges that while specific factors for a limited range of complexes are found to have their expected impact in many cases, the assessment of the net effect of these factors is challenging. -
Bonding in Coordination Compounds
2/4/2017 Bonding in coordination compounds Nobel prize 1913 • Alfred Werner - 1893 • VBT • Crystal Field Theory (CFT) • Modified CFT, known as Ligand Field Theory • MOT How & Why? 1 2/4/2017 Valance Bond Theory Basic Principle A covalent bond forms when the orbtials of two atoms overlap and are occupied by a pair of electrons that have the highest probability of being located between the nuclei. Linus Carl Pauling (1901-1994) Nobel prizes: 1954, 1962 Valance Bond Model Ligand = Lewis base Metal = Lewis acid s, p and d orbitals give hybrid orbitals with specific geometries Number and type of M-L hybrid orbitals determines geometry of the complex Octahedral Complex 3+ e.g. [Cr(NH3)6] 2 2/4/2017 2- 2- Tetrahedral e.g. [Zn(OH)4] Square Planar e.g. [Ni(CN)4] Limitations of VB theory Cannot account for colour of complexes May predict magnetism wrongly Cannot account for spectrochemical series Crystal Field Theory 400 500 600 800 •The relationship between colors and complex metal ions 3 2/4/2017 Crystal Field Model A purely ionic model for transition metal complexes. Ligands are considered as point charge. Predicts the pattern of splitting of d-orbitals. Used to rationalize spectroscopic and magnetic properties. d-orbitals: look attentively along the axis Linear combination of 2 2 2 2 dz -dx and dz -dy 2 2 2 d2z -x -y 4 2/4/2017 Octahedral Field • We assume an octahedral array of negative charges placed around the metal ion (which is positive). • The ligand and orbitals lie on the same axes as negative charges. -
A TRANS INFLUENCE and Π-CONJUGATION EFFECTS on LIGAND SUBSTITUTION REACTIONS of Pt(II) COMPLEXES with TRIDENTATE PENDANT N/S-DONOR LIGANDS
Tanzania Journal of Science 44(2): 45-63, 2018 ISSN 0856-1761, e-ISSN 2507-7961 © College of Natural and Applied Sciences, University of Dar es Salaam, 2018 A TRANS INFLUENCE AND π-CONJUGATION EFFECTS ON LIGAND SUBSTITUTION REACTIONS OF Pt(II) COMPLEXES WITH TRIDENTATE PENDANT N/S-DONOR LIGANDS Grace A Kinunda Chemistry Department, University of Dar es Salaam, P. O. Box 35061, Dar es Salaam, Tanzania E-mail:[email protected]/[email protected] ABSTRACT The rate of displacement of the chloride ligands by three neutral nucleophiles (Nu) of different steric demands, namely thiourea (TU), N,N’-dimethylthiourea (DMTU) and N,N,N,’N- tetramethylthiourea (TMTU) in the complexes viz; [Pt(II)(bis(2-pyridylmethyl)amine)Cl]ClO4, (Pt1), [Pt(II){N-(2-pyridinylmethyl)-8-quinolinamine}Cl]Cl, (Pt2), [Pt(II)(bis(2- pyridylmethyl)sulfide)Cl]Cl, (Pt3) and [Pt(II){8-((2-pyridylmethyl)thiol)quinoline}Cl]Cl, (Pt4) was studied under pseudo first-order conditions as a function of concentration and temperature using a stopped-flow technique and UV-Visible spectrophotometry. The observed pseudo first- order rate constants for substitution reactions obeyed the simple rate law kobs k2Nu. The results have shown that the chloro ligand in Pt(N^S^N) complexes is more labile by two orders of magnitude than Pt(N^N^N) complexes due to the high trans labilizing effect brought by the S- donor atom. The quinoline based Pt(II) complexes (Pt2 and Pt4) have been found to be slow than their pyridine counterparts Pt1 and Pt3 due to poor π-acceptor ability of quinoline.