Free Radical Biology of the Cardiovascular System

Total Page:16

File Type:pdf, Size:1020Kb

Free Radical Biology of the Cardiovascular System Clinical Science (2012) 123, 73–91 (Printed in Great Britain) doi:10.1042/CS20110562 73 REVIEW Free radical biology of the cardiovascular system Alex F. CHEN∗, Dan-Dan CHEN∗, Andreas DAIBER†, Frank M. FARACI‡, Huige LI§, Christopher M. REMBOLD and Ismail LAHER¶ ∗Department of Surgery, McGowan Institute of Regenerative Medicine, University of Pittsburgh School of Medicine, Pittsburgh, PA 15213, U.S.A., †2nd Medical Clinic, Molecular Cardiology, Medical Center of the Johannes Gutenberg University, Mainz, Germany, ‡Departments of Internal Medicine and Pharmacology, Carver College of Medicine, University of Iowa, Iowa City, IA 52242, U.S.A., §Department of Pharmacology, University Medical Center, Johannes Gutenberg University, Mainz, Germany, Cardiovascular Division, Department of Internal Medicine, University of Virginia, Charlottesville, VA 22908, U.S.A., and ¶Department of Pharmacology and Therapeutics, Faculty of Medicine, University of British Columbia, 2176 Health Sciences Mall, Vancouver, BC, Canada V6T 1Z3 ABSTRACT Most cardiovascular diseases (CVDs), as well as age-related cardiovascular alterations, are accompanied by increases in oxidative stress, usually due to increased generation and/or decreased metabolism of ROS (reactive oxygen species; for example superoxide radicals) and RNS (reactive nitrogen species; for example peroxynitrite). The superoxide anion is generated by several enzymatic reactions, including a variety of NADPH oxidases and uncoupled eNOS (endothelial NO synthase). To relieve the burden caused by this generation of free radicals, which also occurs as part of normal physiological processes, such as mitochondrial respiratory chain activity, mammalian systems have developed endogenous antioxidant enzymes. There is an increased usage of exogenous antioxidants such as vitamins C and E by many patients and the general public, ostensibly in an attempt to supplement intrinsic antioxidant activity. Unfortunately, the results of large-scale trails do not generate much enthusiasm for the continued use of antioxidants to mitigate free-radical-induced changes in the cardiovascular system. In the present paper, we review the clinical use of antioxidants by providing the rationale for their use and describe the outcomes of several large-scale trails that largely display negative outcomes. We also describe the emerging understanding of the detailed regulation of superoxide generation by an uncoupled eNOS and efforts to reverse eNOS uncoupling. SIRT1 (sirtuin 1), which regulates the expression and activity of multiple pro- and anti-oxidant enzymes, could be considered a candidate molecule for a ‘molecular switch’. − Key words: cardiovascular disease, endothelial progenitor cell, free radical, oxidative stress, sirtuin, superoxide anion (O2 ). Abbreviations: ACE, angiotensin-converting enzyme; ADMA, asymmetric ω-NG,NG-dimethylarginine; AGE, advanced glycation end-product; AngII, angiotensin II; ApoE, apolipoprotein E; ARB, angiotensin receptor blocker; AT1 receptor, AngII type 1 receptor; BH4, tetrahydrobiopterin; CAD, coronary artery disease; CVD, cardiovascular disease; EPC, endothelial progenitor cell; FOXO, forkhead box O; GCH, GTP cyclohydrolase; GPx, glutathione peroxidase; GTN, nitroglycerine; KO, knockout; LDL, low- density lipoprotein; l-NAME, NG-nitro-l-arginine methyl ester; MI, myocardial infarction; mitoQ, mitoquinone; MMP, matrix metalloproteinase; mPTP, mitochondrial permeability transition pore; mtKATP channel, mitochondrial ATP-sensitive potassium − − channel; NOS, NO synthase; eNOS, endothelial NOS; O2 , superoxide anion; ONOO , peroxynitrite; PARP, poly(ADP- ribose) polymerase; PETN, pentaerithrityl tetranitrate; PKC, protein kinase C; PPAR, peroxisome- proliferator-activated receptor; RAS, renin–angiotensin system; RNS, reactive nitrogen species; RONS, reactive oxygen and nitrogen species; ROS, reactive oxygen species; siRNA, small interfering RNA; SIRT1, sirtuin 1; SOD, superoxide dismutase; Cu/Zn-SOD, copper/zinc SOD; Mn-SOD, manganese SOD; UAG, unacylated ghrelin; VEGF, vascular endothelial growth factor. Correspondence: Dr Ismail Laher (email [email protected]). C The Authors Journal compilation C 2012 Biochemical Society 74 A. F. Chen and others INTRODUCTION Cu/Zn-SOD (copper/zinc SOD; SOD1), Mn-SOD (manganese SOD; SOD2) and ec-SOD (extracellular There is much interest in the role of free radical oxidative SOD; SOD3). GPx proteins consume reduced gluta- damage in human diseases. The first description of free thione to convert H2O2 into water and lipid peroxides radicals was by Gomberg in 1900 at the University to their respective alcohols, with GPx1 being the most of Michigan; the term free radicals refers to atoms, abundant selenoperoxidase and a key antioxidant enzyme molecules or ions with unpaired electrons in their in many cell types. Catalase is an intracellular antioxidant outer shells, making them highly reactive in biological enzyme that is mainly located in cellular peroxisomes and systems. This unstable configuration provides energy that to some extent in the cytosol, which catalyses the reaction is released through reactions with adjacent molecules of H2O2 into water and molecular oxygen [9]. Non- such as proteins, lipids, carbohydrates and nucleic acids. enzymatic antioxidants include vitamins E (tocopherol) As a result, oxidative stress is implicated in several and C (ascorbic acid), thiol antioxidants (glutathione, human diseases, including hypertension, atherosclerosis thioredoxin and lipoic acid), melatonin, carotenoids, and vascular diabetic complications, as well as in the natural flavonoids and other compounds [10]. aging process [1]. The majority of free radicals that The growing interest in the possible beneficial roles damage biological systems are oxygen free radicals. of antioxidant supplements in the treatment of CVD Oxygen free radicals or, more generally, ROS (reactive (cardiovascular disease) has contributed to a debate about oxygen species), as well as RNS (reactive nitrogen their value in providing complementary therapies aimed species), are products of normal cellular metabolism at improving standard therapy. There are numerous [2]. The most common RONS (reactive oxygen and explanations for the failure to observe noticeable benefits − nitrogen species) include O2 (superoxide anions), H2O2 with the use of currently available antioxidants. It is • (hydrogen peroxide), OH (hydroxyl radicals), carbon- possible that the agents examined are ineffective and • centred peroxides and peroxyl radicals, NO (NO non-specific, and that the dosing regimens and the • − radicals), NO2 (nitrogen dioxide radicals), ONOO duration of therapy are insufficient. Vitamins C and E − (peroxynitrite), ClO (hypochlorite) and others [3–5]. may have pro-oxidant properties with harmful and − O2 can be formed from different sources such as deleterious interactions. It is also possible that orally xanthine oxidase, NADPH oxidases, uncoupled NOSs administered antioxidants may be inaccessible to the (NO synthases), enzymes of the mitochondrial respir- source of free radicals, particularly if ROS are generated in atory chain and cytochrome P450 mono-oxygenases [1]. intracellular compartments and organelles. Furthermore, Among these enzymes, NADPH oxidases and uncoupled antioxidant vitamins do not scavenge H2O2, which may − eNOS (endothelial NOS) are crucial ROS sources under be more important than O2 in CVD [11]. In the present pathological conditions [6]. Oxidative stress defines a review, we will discuss strategies for the design of newer state with either increased (uncontrolled) formation of antioxidants. For example, it may be more promising to RONS and/or impaired cellular antioxidant defence develop antioxidants that accumulate at the site of oxidant system (e.g. down-regulation of important antioxidant formation (e.g. mitochondrial-targeted antioxidants) or proteins) with subsequent depletion of low-molecular- to inhibit the sources of oxidants (e.g. NADPH oxidase mass antioxidants and a shift in the cellular redox balance inhibitors). Another strategy would be the synthetic [7]. production of intrinsic antioxidant enzymes (e.g. SOD- Organisms have evolved a number of antioxidant mimetic antioxidants). enzymes to combat the burden of increased oxidative stress. An antioxidant refers to any molecule capable of stabilizing or deactivating free radicals before they OXIDATIVE STRESS IN VASCULAR AGING attach to cells. Humans have evolved highly complex AND DISEASE antioxidant systems (enzymatic and non-enzymatic) that work synergistically, and in combination with each Aging produces complex changes in both structure and other, to protect cells and organ systems of the body function throughout the vascular tree [12]. Mechanisms against free radical damage. Antioxidants can be either that underlie vascular homoeostasis and maintain oxygen endogenously produced substances or obtained from delivery often become impaired with aging. For example, exogenous sources, e.g. as a part of a diet or as dietary resting blood flow and most vasodilator responses decline supplements. Some dietary compounds that do not with age. Complex responses including neurovascular neutralize free radicals, but enhance endogenous activity, coupling and endothelium-dependent regulation of can also be classified as antioxidants [8]. vascular tone exhibit age-related dysfunction in both The most efficient enzymatic antioxidants involve GPx experimental animals and humans [13]. Vascular or (glutathione peroxidase), catalase
Recommended publications
  • Effect of a Caloric Restriction Based On
    UNIVERSIDAD AUTÓNOMA DE MADRID FACULTAD DE CIENCIAS DEPARTAMENTO DE BIOLOGÍA DOCTORAL THESIS Biology PhD “Effect of a caloric restriction based on the Mediterranean diet and intake of traditional Mediterranean foods on the expression of microRNAs regulating molecular processes associated with aging” INSTITUTO MADRILEÑO DE ESTUDIOS AVANZADOS EN ALIMENTACIÓN (IMDEA FOOD INSTITUTE) VÍCTOR MICÓ MORENO Madrid, 2018 UNIVERSIDAD AUTÓNOMA DE MADRID FACULTAD DE CIENCIAS DEPARTAMENTO DE BIOLOGÍA DOCTORAL THESIS Biology PhD “Effect of a caloric restriction based on the Mediterranean diet and intake of traditional Mediterranean foods on the expression of microRNAs regulating molecular processes associated with aging” INSTITUTO MADRILEÑO DE ESTUDIOS AVANZADOS EN ALIMENTACIÓN (IMDEA FOOD INSTITUTE) Memoria presentada por: Víctor Micó Moreno Para optar al grado de: DOCTOR EN BIOLOGÍA Doña Lidia Ángeles Daimiel Ruíz, Doctora en Biología Celular y Genética por la Universidad Autónoma de Madrid, investigadora del Instituto IMDEA Alimentación, informa favorablemente la solicitud de autorización de defensa de la tesis doctoral con el Título: “Effect of a caloric restriction based on the Mediterranean diet and intake of traditional Mediterranean foods on the expression of microRNAs regulating molecular processes associated with aging”, presentada por Don Víctor Micó Moreno para optar al grado de Doctor en Biología. Este trabajo ha sido realizado en el Instituto Madrileño de Estudios Avanzados en Alimentación (IMDEA Alimentación) bajo su dirección, y cumple satisfactoriamente las condiciones requeridas por el Departamento de Biología de la Universidad Autónoma de Madrid para optar al Título de Doctor. Ha actuado como tutor académico, y presenta su conformidad el Dr. Carlos Francisco Sentís Castaño, vicedecano de Personal Docente e Investigador y profesor titular del Departamento de Biología de la Facultad de Ciencias de la Universidad Autónoma de Madrid.
    [Show full text]
  • Supplementary Table S4. FGA Co-Expressed Gene List in LUAD
    Supplementary Table S4. FGA co-expressed gene list in LUAD tumors Symbol R Locus Description FGG 0.919 4q28 fibrinogen gamma chain FGL1 0.635 8p22 fibrinogen-like 1 SLC7A2 0.536 8p22 solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 DUSP4 0.521 8p12-p11 dual specificity phosphatase 4 HAL 0.51 12q22-q24.1histidine ammonia-lyase PDE4D 0.499 5q12 phosphodiesterase 4D, cAMP-specific FURIN 0.497 15q26.1 furin (paired basic amino acid cleaving enzyme) CPS1 0.49 2q35 carbamoyl-phosphate synthase 1, mitochondrial TESC 0.478 12q24.22 tescalcin INHA 0.465 2q35 inhibin, alpha S100P 0.461 4p16 S100 calcium binding protein P VPS37A 0.447 8p22 vacuolar protein sorting 37 homolog A (S. cerevisiae) SLC16A14 0.447 2q36.3 solute carrier family 16, member 14 PPARGC1A 0.443 4p15.1 peroxisome proliferator-activated receptor gamma, coactivator 1 alpha SIK1 0.435 21q22.3 salt-inducible kinase 1 IRS2 0.434 13q34 insulin receptor substrate 2 RND1 0.433 12q12 Rho family GTPase 1 HGD 0.433 3q13.33 homogentisate 1,2-dioxygenase PTP4A1 0.432 6q12 protein tyrosine phosphatase type IVA, member 1 C8orf4 0.428 8p11.2 chromosome 8 open reading frame 4 DDC 0.427 7p12.2 dopa decarboxylase (aromatic L-amino acid decarboxylase) TACC2 0.427 10q26 transforming, acidic coiled-coil containing protein 2 MUC13 0.422 3q21.2 mucin 13, cell surface associated C5 0.412 9q33-q34 complement component 5 NR4A2 0.412 2q22-q23 nuclear receptor subfamily 4, group A, member 2 EYS 0.411 6q12 eyes shut homolog (Drosophila) GPX2 0.406 14q24.1 glutathione peroxidase
    [Show full text]
  • Compartmentation of NAD+-Dependent Signalling ⇑ ⇑ Friedrich Koch-Nolte A, , Stefan Fischer B, Friedrich Haag A, Mathias Ziegler B
    View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector FEBS Letters 585 (2011) 1651–1656 journal homepage: www.FEBSLetters.org Review Compartmentation of NAD+-dependent signalling ⇑ ⇑ Friedrich Koch-Nolte a, , Stefan Fischer b, Friedrich Haag a, Mathias Ziegler b, a Institute of Immunology, University Medical Center, Martinistr. 52, 20246 Hamburg, Germany b Department of Molecular Biology, University of Bergen, Thormøhlensgate 55, 5008 Bergen, Norway article info abstract Article history: NAD+ plays central roles in energy metabolism as redox carrier. Recent research has identified Received 25 February 2011 important signalling functions of NAD+ that involve its consumption. Although NAD+ is synthesized Revised 21 March 2011 mainly in the cytosol, nucleus and mitochondria, it has been detected also in vesicular and extracel- Accepted 21 March 2011 lular compartments. Three protein families that consume NAD+ in signalling reactions have been Available online 31 March 2011 characterized on a molecular level: ADP-ribosyltransferases (ARTs), Sirtuins (SIRTs), and NAD+ glyco- Edited by Sergio Papa, Gianfranco Gilardi hydrolases (NADases). Members of these families serve important regulatory functions in various and Wilhelm Just cellular compartments, e.g., by linking the cellular energy state to gene expression in the nucleus, by regulating nitrogen metabolism in mitochondria, and by sensing tissue damage in the extracel- + Keywords: lular compartment. Distinct NAD pools may be crucial for these processes. Here, we review the cur- + NAD+ rent knowledge about the compartmentation and biochemistry of NAD -converting enzymes that + ADP-ribosyltransferase control NAD signalling. Sirtuins Ó 2011 Federation of European Biochemical Societies.
    [Show full text]
  • Metabolic Regulation of Epigenetic Modifications and Cell
    cancers Review Metabolic Regulation of Epigenetic Modifications and Cell Differentiation in Cancer Pasquale Saggese 1, Assunta Sellitto 2 , Cesar A. Martinez 1, Giorgio Giurato 2 , Giovanni Nassa 2 , Francesca Rizzo 2 , Roberta Tarallo 2 and Claudio Scafoglio 1,* 1 Division of Pulmonary and Critical Care Medicine, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, CA 90095, USA; [email protected] (P.S.); [email protected] (C.A.M.) 2 Laboratory of Molecular Medicine and Genomics, Department of Medicine, Surgery and Dentistry ‘Scuola Medica Salernitana’, University of Salerno, 84081 Baronissi (SA), Italy; [email protected] (A.S.); [email protected] (G.G.); [email protected] (G.N.); [email protected] (F.R.); [email protected] (R.T.) * Correspondence: [email protected]; Tel.: +1-310-825-9577 Received: 20 October 2020; Accepted: 11 December 2020; Published: 16 December 2020 Simple Summary: Cancer cells change their metabolism to support a chaotic and uncontrolled growth. In addition to meeting the metabolic needs of the cell, these changes in metabolism also affect the patterns of gene activation, changing the identity of cancer cells. As a consequence, cancer cells become more aggressive and more resistant to treatments. In this article, we present a review of the literature on the interactions between metabolism and cell identity, and we explore the mechanisms by which metabolic changes affect gene regulation. This is important because recent therapies under active investigation target both metabolism and gene regulation. The interactions of these new therapies with existing chemotherapies are not known and need to be investigated.
    [Show full text]
  • Global Profiling of Metabolic Adaptation to Hypoxic Stress in Human Glioblastoma Cells
    Global profiling of metabolic adaptation to hypoxic stress in human glioblastoma cells. Kucharzewska, Paulina; Christianson, Helena; Belting, Mattias Published in: PLoS ONE DOI: 10.1371/journal.pone.0116740 2015 Link to publication Citation for published version (APA): Kucharzewska, P., Christianson, H., & Belting, M. (2015). Global profiling of metabolic adaptation to hypoxic stress in human glioblastoma cells. PLoS ONE, 10(1), [e0116740]. https://doi.org/10.1371/journal.pone.0116740 Total number of authors: 3 General rights Unless other specific re-use rights are stated the following general rights apply: Copyright and moral rights for the publications made accessible in the public portal are retained by the authors and/or other copyright owners and it is a condition of accessing publications that users recognise and abide by the legal requirements associated with these rights. • Users may download and print one copy of any publication from the public portal for the purpose of private study or research. • You may not further distribute the material or use it for any profit-making activity or commercial gain • You may freely distribute the URL identifying the publication in the public portal Read more about Creative commons licenses: https://creativecommons.org/licenses/ Take down policy If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. LUND UNIVERSITY PO Box 117 221 00 Lund +46 46-222 00 00 Download date: 07. Oct. 2021 RESEARCH ARTICLE Global Profiling of Metabolic Adaptation to Hypoxic Stress in Human Glioblastoma Cells Paulina Kucharzewska1, Helena C.
    [Show full text]
  • Epigenetic Regulation in B-Cell Maturation and Its Dysregulation in Autoimmunity
    OPEN Cellular and Molecular Immunology (2018) 15, 676–684 www.nature.com/cmi REVIEW Epigenetic regulation in B-cell maturation and its dysregulation in autoimmunity Haijing Wu1, Yaxiong Deng1, Yu Feng1, Di Long1, Kongyang Ma2, Xiaohui Wang2, Ming Zhao1, Liwei Lu2 and Qianjin Lu1 B cells have a critical role in the initiation and acceleration of autoimmune diseases, especially those mediated by autoantibodies. In the peripheral lymphoid system, mature B cells are activated by self or/and foreign antigens and signals from helper T cells for differentiating into either memory B cells or antibody-producing plasma cells. Accumulating evidence has shown that epigenetic regulations modulate somatic hypermutation and class switch DNA recombination during B-cell activation and differentiation. Any abnormalities in these complex regulatory processes may contribute to aberrant antibody production, resulting in autoimmune pathogenesis such as systemic lupus erythematosus. Newly generated knowledge from advanced modern technologies such as next-generation sequencing, single-cell sequencing and DNA methylation sequencing has enabled us to better understand B-cell biology and its role in autoimmune development. Thus this review aims to summarize current research progress in epigenetic modifications contributing to B-cell activation and differentiation, especially under autoimmune conditions such as lupus, rheumatoid arthritis and type 1 diabetes. Cellular and Molecular Immunology advance online publication, 29 January 2018; doi:10.1038/cmi.2017.133 Keywords:
    [Show full text]
  • Activation of the AMPK/Sirt1 Pathway by a Leucine
    METABOLISM CLINICAL AND EXPERIMENTAL 65 (2016) 1679– 1691 Available online at www.sciencedirect.com Metabolism www.metabolismjournal.com Activation of the AMPK/Sirt1 pathway by a leucine–metformin combination increases insulin sensitivity in skeletal muscle, and stimulates glucose and lipid metabolism and increases life span in Caenorhabditis elegans Jheelam Banerjee⁎, Antje Bruckbauer, Michael B. Zemel NuSirt BioPharma Inc., 11020 Solway School Road, Knoxville, TN 37931, USA ARTICLE INFO ABSTRACT Article history: Background. We have previously shown leucine (Leu) to activate Sirt1 by lowering its KM for Received 28 January 2016 NAD+, thereby amplifying the effects of other sirtuin activators and improving insulin Accepted 29 June 2016 sensitivity. Metformin (Met) converges on this pathway both indirectly (via AMPK) and by direct activation of Sirt1, and we recently found Leu to synergize with Met to improve insulin Keywords: sensitivity and glycemic control while achieving ~80% dose-reduction in diet-induced obese AMPK mice. Accordingly, we sought here to define the mechanism of this interaction. Sirt1 Methods. Muscle cells C2C12 and liver cells HepG2 were used to test the effect of Met–Leu on Insulin sensitivity Sirt1 activation. Caenorhabditis elegans was used for glucose utilization and life span studies. Leucine Results. Leu (0.5 mmol/L) + Met (50–100 μmol/L) synergistically activated Sirt1 (p < 0.001) at + Metformin low (≤100 μmol/L) NAD levels while Met exerted no independent effect. This was associated with an increase in AMPK and ACC, phosphorylation, and increased fatty acid oxidation, which was prevented by AMPK or Sirt inhibition or silencing. Met–Leu also increased P-IRS1/IRS1 and P-AKT/AKT and in insulin-independent glucose disposal in myotubes (~50%, p < 0.002) evident within 30 min as well as a 60% reduction in insulin EC50.
    [Show full text]
  • Unexpected Side Effects of Everyday Medication Through Sirtuin1 Modulation
    223-232 9/1/08 16:06 Page 223 INTERNATIONAL JOURNAL OF MOLECULAR MEDICINE 21: 223-232, 2008 223 Aging and anti-aging: Unexpected side effects of everyday medication through sirtuin1 modulation NICOLE ENGEL2 and ULRICH MAHLKNECHT1,2 1Saarland University Medical Center, Department of Hematology/Oncology, José Carreras Center for Immunotherapy and Gene Therapy, D-66424 Homburg/Saar; 2Department of Hematology/Oncology, University of Heidelberg Medical Center, Im Neuenheimer Feld 410, D-69120 Heidelberg, Germany Received August 28, 2007; Accepted October 19, 2007 Abstract. The sirtuin 1 protein (SIRT1) is a member of the Introduction class III NAD+-dependent histone deacetylases, which are also referred to as the ‘sirtuins’. The sirtuins and silent Reversible DNA and protein modification, such as acetylation information regulator 1 (SIRT1) in particular, are known to and deacetylation, are involved in the regulation of tran- play a role in the response to DNA damage, metabolism, scriptional activity and influence protein enzymatic activity. longevity and carcinogenesis. SIRT1 regulates different Acetylation of histone N-terminal lysine residues is carried cellular processes such as proliferation, differentiation and out by histone acetyltransferases (HATs) and is associated apoptosis through deacetylation of important regulatory with increased transcriptional activity in eukaryotic cells proteins such as p53, FOXO3a and NFκB. A number of through chromatin relaxation and may be reversed by different modifiers of SIRT1 expression and activity have competing histone deacetylase (HDAC) enzymatic activities, been discovered and even food and cosmetic additives (e.g. which cause histone deacetylation and thus chromatin resveratrol and dihydrocoumarin) have been suggested to condensation and subsequently repression of gene expression either activate or inhibit the activity of human SIRT1.
    [Show full text]
  • Global Proteomic Detection of Native, Stable, Soluble Human Protein Complexes
    GLOBAL PROTEOMIC DETECTION OF NATIVE, STABLE, SOLUBLE HUMAN PROTEIN COMPLEXES by Pierre Claver Havugimana A thesis submitted in conformity with the requirements for the degree of Doctor of Philosophy Graduate Department of Molecular Genetics University of Toronto © Copyright by Pierre Claver Havugimana 2012 Global Proteomic Detection of Native, Stable, Soluble Human Protein Complexes Pierre Claver Havugimana Doctor of Philosophy Graduate Department of Molecular Genetics University of Toronto 2012 Abstract Protein complexes are critical to virtually every biological process performed by living organisms. The cellular “interactome”, or set of physical protein-protein interactions, is of particular interest, but no comprehensive study of human multi-protein complexes has yet been reported. In this Thesis, I describe the development of a novel high-throughput profiling method, which I term Fractionomic Profiling-Mass Spectrometry (or FP-MS), in which biochemical fractionation using non-denaturing high performance liquid chromatography (HPLC), as an alternative to affinity purification (e.g. TAP tagging) or immuno-precipitation, is coupled with tandem mass spectrometry-based protein identification for the global detection of stably- associated protein complexes in mammalian cells or tissues. Using a cell culture model system, I document proof-of-principle experiments confirming the suitability of this method for monitoring large numbers of soluble, stable protein complexes from either crude protein extracts or enriched sub-cellular compartments. Next, I document how, using orthogonal functional genomics information generated in collaboration with computational biology groups as filters, we applied FP-MS co-fractionation profiling to construct a high-quality map of 622 predicted unique soluble human protein complexes that could be biochemically enriched from HeLa and HEK293 nuclear and cytoplasmic extracts.
    [Show full text]
  • Resveratrol and Vascular Function
    International Journal of Molecular Sciences Review Resveratrol and Vascular Function Huige Li 1,* , Ning Xia 1, Solveig Hasselwander 1 and Andreas Daiber 2,* 1 Department of Pharmacology, Johannes Gutenberg University Medical Center, 55131 Mainz, Germany; [email protected] (N.X.); [email protected] (S.H.) 2 Center for Cardiology, Cardiology I - Laboratory of Molecular Cardiology, Johannes Gutenberg University Medical Center, 55131 Mainz, Germany * Correspondence: [email protected] (H.L.); [email protected] (A.D.) Received: 25 March 2019; Accepted: 24 April 2019; Published: 30 April 2019 Abstract: Resveratrol increases the production of nitric oxide (NO) in endothelial cells by upregulating the expression of endothelial NO synthase (eNOS), stimulating eNOS enzymatic activity, and preventing eNOS uncoupling. At the same time, resveratrol inhibits the synthesis of endothelin-1 and reduces oxidative stress in both endothelial cells and smooth muscle cells. Pathological stimuli-induced smooth muscle cell proliferation, vascular remodeling, and arterial stiffness can be ameliorated by resveratrol as well. In addition, resveratrol also modulates immune cell function, inhibition of immune cell infiltration into the vascular wall, and improves the function of perivascular adipose tissue. All these mechanisms contribute to the protective effects of resveratrol on vascular function and blood pressure in vivo. Sirtuin 1, AMP-activated protein kinase, and estrogen receptors represent the major molecules mediating the vascular effects of resveratrol. Keywords: resveratrol; endothelium; endothelial nitic oxide synthase; sirtuin 1; cardiovascular disease; vascular function 1. Resveratrol and its Molecular Targets The polyphenolic phytoalexin 3,5,40-trihydroxy-trans-stilbene, better known under its trivial name resveratrol, can be found in numerous plants, such as white hellebore (Veratrum grandiflorum), mulberry (Morus rubra), peanut (Archis hypogaea), and grapes (Vitis vinifera)[1–3].
    [Show full text]
  • Metabolism Impacts on Proteostasis and Aging
    Cell Death & Differentiation (2021) 28:505–521 https://doi.org/10.1038/s41418-020-00682-y REVIEW ARTICLE Build-UPS and break-downs: metabolism impacts on proteostasis and aging 1 1 1,2 Franziska Ottens ● André Franz ● Thorsten Hoppe Received: 4 September 2020 / Revised: 9 November 2020 / Accepted: 10 November 2020 / Published online: 4 January 2021 © The Author(s) 2021, corrected publication 2021 Abstract Perturbation of metabolism elicits cellular stress which profoundly modulates the cellular proteome and thus protein homeostasis (proteostasis). Consequently, changes in the cellular proteome due to metabolic shift require adaptive mechanisms by molecular protein quality control. The mechanisms vitally controlling proteostasis embrace the entire life cycle of a protein involving translational control at the ribosome, chaperone-assisted native folding, and subcellular sorting as well as proteolysis by the proteasome or autophagy. While metabolic imbalance and proteostasis decline have been recognized as hallmarks of aging and age-associated diseases, both processes are largely considered independently. Here, we delineate how proteome stability is governed by insulin/IGF1 signaling (IIS), mechanistic target of Rapamycin (TOR), 5′ 1234567890();,: 1234567890();,: adenosine monophosphate-activated protein kinase (AMPK), and NAD-dependent deacetylases (Sir2-like proteins known as sirtuins). This comprehensive overview is emphasizing the regulatory interconnection between central metabolic pathways and proteostasis, indicating the relevance of shared signaling nodes as targets for future therapeutic interventions. Facts Open questions ● Metabolic imbalance and proteostasis decline have been ● Common signaling nodes and shared mechanisms of recognized as hallmarks of aging and age-associated proteostasis networks and metabolism remain to be diseases, both processes are largely considered identified.
    [Show full text]
  • Calmodulin-Dependent Protein Kinase Kinase Β Phosphorylation of Sirtuin 1 in Endothelium Is Atheroprotective
    Ca2+/calmodulin-dependent protein kinase kinase β phosphorylation of Sirtuin 1 in endothelium is atheroprotective Liang Wena,b, Zhen Chenb, Fan Zhangc, Xiaopei Cuib, Wei Sunb, Greg G. Gearyd, Yinsheng Wangc, David A. Johnsonb, Yi Zhua,1, Shu Chiene,1, and John Y.-J. Shyyb,f,1 aDepartment of Physiology and Pathophysiology, Peking University Health Sciences Center, Beijing 100191, China; bDivision of Biomedical Sciences and cDepartment of Chemistry, University of California, Riverside, CA 92521; dDepartment of Kinesiology and Health Sciences, California State University, San Bernardino, CA 92407; and Departments of eBioengineering and fMedicine, University of California, San Diego, La Jolla, CA 92093 Contributed by Shu Chien, May 16, 2013 (sent for review March 3, 2013) Atheroprotective flow exerts antioxidative and anti-inflammatory SIRT1, there could be a flow-responsive cytoplasmic kinase that effects on vascular endothelial cells (ECs), in part through the phosphorylates SIRT1 to enhance its activity. induction of Sirtuin 1 (SIRT1), a class III histone deacetylase. The role Like SIRT1, AMP-activated protein kinase (AMPK) functions of Ca2+/calmodulin-dependent protein kinase kinase (CaMKK)β in as a master regulator in stress response and energy homeostasis in flow induction of SIRT1 both in vitro and in vivo was investigated. eukaryotic cells. SIRT1 and AMPK are coregulated by caloric Pulsatile shear stress mimicking atheroprotective flow increased restriction, resveratrol, and exercise (15, 16), which coordinately the level of SIRT1 in cultured ECs by enhancing its stability, and this deacetylate and phosphorylate a common set of molecular targets effect was abolished by inhibition or knockdown of CaMKKβ.Flow- such as PGC1α (17).
    [Show full text]