SCAMIT Newsletter Vol. 11 No. 7 1992 November
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Environmental DNA Metabarcoding As a Means of Estimating Species Diversity in an Urban Aquatic Ecosystem
animals Article Environmental DNA Metabarcoding as a Means of Estimating Species Diversity in an Urban Aquatic Ecosystem Heather J. Webster 1, Arsalan Emami-Khoyi 1, Jacobus C. van Dyk 2, Peter R. Teske 1 and Bettine Jansen van Vuuren 1,* 1 Centre for Ecological Genomics and Wildlife Conservation, Department of Zoology, University of Johannesburg, Auckland Park, Gauteng 2006, South Africa; [email protected] (H.J.W.); [email protected] (A.E.-K.); [email protected] (P.R.T.) 2 Department of Zoology, University of Johannesburg, Auckland Park, Gauteng 2006, South Africa; [email protected] * Correspondence: [email protected] Received: 13 October 2020; Accepted: 5 November 2020; Published: 7 November 2020 Simple Summary: Cities are the fastest developing ecosystems on the planet. The rapid expansion of urban areas is typically seen as a threat to global biodiversity, yet the role of cities in protecting species that may be rare in the wild remains poorly explored. Here, we report the use of environmental DNA (eDNA) to document the species present in one of the largest urban green spaces in Johannesburg, South Africa. We document a surprisingly large number of taxonomic groups, including some rare and threatened species. Our results support the notion that urban green spaces can provide refuge to a large number of species, and the species inventory provides critical information that can be used by city parks managers to conserve green spaces. Abstract: Adaptation to environments that are changing as a result of human activities is critical to species’ survival. A large number of species are adapting to, and even thriving in, urban green spaces, but this diversity remains largely undocumented. -
Global Diversity of Amphipods (Amphipoda; Crustacea) in Freshwater
Hydrobiologia (2008) 595:241–255 DOI 10.1007/s10750-007-9020-6 FRESHWATER ANIMAL DIVERSITY ASSESSMENT Global diversity of amphipods (Amphipoda; Crustacea) in freshwater R. Va¨ino¨la¨ Æ J. D. S. Witt Æ M. Grabowski Æ J. H. Bradbury Æ K. Jazdzewski Æ B. Sket Ó Springer Science+Business Media B.V. 2007 Abstract Amphipods are brooding peracaridan abundant in cool and temperate environments; they crustaceans whose young undergo direct develop- are particularly diversified in subterranean environ- ment, with no independent larval dispersal stage. ments and in running waters (fragmented habitats), Most species are epibenthic, benthic, or subterranean. and in temperate ancient lakes, but are notably rare in There are some 1,870 amphipod species and subspe- the tropics. Of the described freshwater taxa 70% are cies recognized from fresh or inland waters world- Palearctic, 13% Nearctic, 7% Neotropical, 6% Aus- wide at the end of 2005. This accounts for 20% of the tralasian and 3% Afrotropical. Approximately 45% of total known amphipod diversity. The actual diversity the taxa are subterranean; subterranean diversity is may still be several-fold. Amphipods are most highest in the karst landscapes of Central and Southern Europe (e.g., Niphargidae), North America (Crangonyctidae), and Australia (Paramelitidae). The Guest editors: E. V. Balian, C. Le´veˆque, H. Segers and K. Martens majority of Palearctic epigean amphipods are in the Freshwater Animal Diversity Assessment superfamily Gammaroidea, whereas talitroid amphi- pods (Hyalella) account for all Neotropic and much R. Va¨ino¨la¨ (&) of the Nearctic epigean fauna. Major concentrations Finnish Museum of Natural History, University of of endemic species diversity occur in Southern Helsinki, POB 17, 00014 Helsinki, Finland e-mail: risto.vainola@helsinki.fi Europe, Lake Baikal, the Ponto-Caspian basin, Southern Australia (including Tasmania), and the J. -
Research Commons at The
http://waikato.researchgateway.ac.nz/ Research Commons at the University of Waikato Copyright Statement: The digital copy of this thesis is protected by the Copyright Act 1994 (New Zealand). The thesis may be consulted by you, provided you comply with the provisions of the Act and the following conditions of use: Any use you make of these documents or images must be for research or private study purposes only, and you may not make them available to any other person. Authors control the copyright of their thesis. You will recognise the author’s right to be identified as the author of the thesis, and due acknowledgement will be made to the author where appropriate. You will obtain the author’s permission before publishing any material from the thesis. Phylogeography and Ecology of New Zealand Freshwater Amphipoda (Paracalliope, Paraleptamphopus and Phreatogammarus) A thesis submitted in partial fulfilment of the requirements for the Degree of Doctor of Philosophy in Biological Sciences at the University of Waikato by Darin Lee Sutherland The University of Waikato 2006 ABSTRACT This thesis examines phylogenetic patterns in three New Zealand amphipod taxa in relation to current geographic distributions and historical climatic (e.g. glaciation, marine inundation) and geological (e.g. mountain building) events using DNA sequencing and distributional data. It also examines how recognition behaviour can be used to delineate potential species boundaries and to assess the role of sexual selection. The endemic genus Phreatogammarus has been found in only a limited number of sites and is not very abundant. An analysis of the genetic variation of two species within the genus using allozyme electrophoresis revealed high levels of genetic differentiation among populations but low levels within populations. -
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30 September 1991 Memoirs of the Museum of Victoria 52(2): 283-289 (1991) ISSN 0814-1827 https://doi.org/10.24199/j.mmv.1991.52.05 YHI YINDI, A NEW GENUS AND SPECIES OF PARACALLIOPIIDAE (CRUSTACEA: AMPHIPODA) FROM THE GREAT BARRIER REEF By J. L. Barnard 1 and James Darwin Thomas 2 'NHB-163. Department of Invertebrate Zoology, Smithsonian Institution, Washington, DC 20560 USA -Reef Foundation, PO Box 569, Big Pine Key, Florida, 33043, USA Abstract Barnard, J. L. and Thomas. J. D„ 1991. Yhi yindi. a new genus and species of Paracallio- piidae (Crustacea: Amphipoda) from the Great Barrier Reef. Memoirs of the Museum of Victoria 52: 283-289. The new genus and species, Yhi yindi was found in 4 m on coral-algal sand at Orpheus Island on the Great Barrier Reef. The genus differs from others in the family in the loss of carpal lobes on the gnathopods of both sexes, the strongly reduced male gnathopod 2 and reduced spination on the outer plate of the maxilliped. The antennae are unusually elongate and articles 2-3 of antenna 1 are as long as article 1, found otherwise only in Doowia which has short antenna 1 and fused eyes. Unlike Paraca/liope and Indocalliope this genus plus Katocalliope and Doowia are characterized by fossorial pereopods 3-6. Introduction ily includes Doowia which has fused eyes but because of fused urosomites 2-3 is placed in A review of Paracalliopiidae is presented to Paracalliopiidae rather than Oedicerotidae. The include the new genus and species, Yhi yindi, gnathopods of Doowia conform to the facies in into new keys and into a newly revised diagnosis. -
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1 Memoirs of the Museum of Victoria 53(1): 1-29 (l l> l>2) 30 May 1992 https://doi.org/10.24199/j.mmv.1992.53.01 PARACALUOPE, A GENUS OF AUSTRAL IAN SHORELINES (CRUSTACEA: AMPHIPODA: PARACALLIOPIIDAE) By J. L. Barnard'* and M. M. Drummond 1 Department of Invertebrate Zoology. NHB-163, Smithsonian Institution. Washington. DC 20S60, USA : Department of Crustacea. Museum of Victoria. Swanston Street, Melbourne, Victoria 3000, Australia Abstract Barnard, J.L. and Drummoiul. MM. 1992. Paracalliopc. a genus of Australian shorelines (Crustacea: Amphipoda: I'aracalliopiidae). Memoirs ofthe Museum of Victoria 53: 1-29. Species of Paracalliopc are widely distributed along south-eastern open-sea shores, brack- ish inlets and certain freshwater streams of Australia. We describe here extensive collections ranging from southern Queensland through New South Wales and Tasmania to western Victoria. The identity o\ Plicntsa australis llaswell (1880) is now confirmed from numerous topotypic collections, at Cape Hanks, as the first species of Paracalliopc described from Australia and as the senior synonym of Paroediceropsis raymondi learn-Wannan (1968). Paracalliopc iarai Knott (1975), a freshwater Tasmanian species, is re-examined and par- tially re-described. A third mostly marine and widespread new species. /' lonryi, is described and a fourth species. /' victims, also new. with quite variable brackish-freshwater habitat, is described in numerous collections from Tasmania. Introduction Museum (AM). Queensland Museum (QM) and I'asmanian Museum (I'M). Many replicate The Paracalliopiidae were established by Bar- samples have been identified but only one from 1 nard and Karaman ( > 8 2 ) to include Paracai- each locality is reported here. -
Two Species of Paracalliopiidae from the Ryukyu Archipelago in Japan, with the Description of a New Species (Crustacea: Amphipoda)
Species Diversity 26: 79–91 Published online 22 March 2021 DOI: 10.12782/specdiv.26.79 Two Species of Paracalliopiidae from the Ryukyu Archipelago in Japan, with the Description of a New Species (Crustacea: Amphipoda) Hiroyuki Ariyama Osaka Museum of Natural History, Nagai Park, Higashi-Sumiyoshi, Osaka 546-0034, Japan E-mail: [email protected] (Received 27 October 2020; Accepted 31 January 2021) http://zoobank.org/5B86B101-40CC-4349-A39C-BC4B55CDE282 Two species of the paracalliopiid Amphipoda are recorded from the Ryukyu Archipelago in Japan, one of which is Mucrocalliope ryukyuensis sp. nov., the second species of the genus. This new species is very similar to the type species, M. shimantoensis Ariyama and Azuma, 2011 from the Shimanto estuary, western Japan; however, M. ryukyuensis can be distin- guished from M. shimantoensis by the longer peduncular article 4 of the male antenna 2 and the basis of the male pereopod 5 with a posteromedial plumose seta. The other species is Paracalliope dichotomus Morino, 1991; its morphology in female and the coloration are firstly described. Key Words: Mucrocalliope, Paracalliope, morphology, coloration, Kakeroma Island, Okinawa Island, Iriomote Island, coxal gill. Introduction Taxonomic Account The amphipod family Paracalliopiidae is a small group Family Paracalliopiidae Barnard and Karaman, 1982 containing only 19 species in six genera and is characterized [Japanese name: Genkotsu-yokoebi-ka] by the coalesced urosomites 2 and 3 and the elongate pe- Genus Mucrocalliope Ariyama and Azuma, 2011 reopod 7 (Ariyama and Azuma 2011). In Japan, two species [Japanese name: Toge-genkotsu-yokoebi-zoku] of the family have been recorded: Paracalliope dichotomus Morino, 1991 from Okinawa Island and Mucrocalliope shi- Mucrocalliope Ariyama and Azuma, 2011: 138. -
Subphylum Crustacea Brünnich, 1772. In: Zhang, Z.-Q
Subphylum Crustacea Brünnich, 1772 1 Class Branchiopoda Latreille, 1817 (2 subclasses)2 Subclass Sarsostraca Tasch, 1969 (1 order) Order Anostraca Sars, 1867 (2 suborders) Suborder Artemiina Weekers, Murugan, Vanfleteren, Belk and Dumont, 2002 (2 families) Family Artemiidae Grochowski, 1896 (1 genus, 9 species) Family Parartemiidae Simon, 1886 (1 genus, 18 species) Suborder Anostracina Weekers, Murugan, Vanfleteren, Belk and Dumont, 2002 (6 families) Family Branchinectidae Daday, 1910 (2 genera, 46 species) Family Branchipodidae Simon, 1886 (6 genera, 36 species) Family Chirocephalidae Daday, 1910 (9 genera, 78 species) Family Streptocephalidae Daday, 1910 (1 genus, 56 species) Family Tanymastigitidae Weekers, Murugan, Vanfleteren, Belk and Dumont, 2002 (2 genera, 8 species) Family Thamnocephalidae Packard, 1883 (6 genera, 62 species) Subclass Phyllopoda Preuss, 1951 (3 orders) Order Notostraca Sars, 1867 (1 family) Family Triopsidae Keilhack, 1909 (2 genera, 15 species) Order Laevicaudata Linder, 1945 (1 family) Family Lynceidae Baird, 1845 (3 genera, 36 species) Order Diplostraca Gerstaecker, 1866 (3 suborders) Suborder Spinicaudata Linder, 1945 (3 families) Family Cyzicidae Stebbing, 1910 (4 genera, ~90 species) Family Leptestheriidae Daday, 1923 (3 genera, ~37 species) Family Limnadiidae Baird, 1849 (5 genera, ~61 species) Suborder Cyclestherida Sars, 1899 (1 family) Family Cyclestheriidae Sars, 1899 (1 genus, 1 species) Suborder Cladocera Latreille, 1829 (4 infraorders) Infraorder Ctenopoda Sars, 1865 (2 families) Family Holopediidae -
29196394.Pdf
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Research Commons@Waikato http://waikato.researchgateway.ac.nz/ Research Commons at the University of Waikato Copyright Statement: The digital copy of this thesis is protected by the Copyright Act 1994 (New Zealand). The thesis may be consulted by you, provided you comply with the provisions of the Act and the following conditions of use: Any use you make of these documents or images must be for research or private study purposes only, and you may not make them available to any other person. Authors control the copyright of their thesis. You will recognise the author’s right to be identified as the author of the thesis, and due acknowledgement will be made to the author where appropriate. You will obtain the author’s permission before publishing any material from the thesis. Phylogeography and Ecology of New Zealand Freshwater Amphipoda (Paracalliope, Paraleptamphopus and Phreatogammarus) A thesis submitted in partial fulfilment of the requirements for the Degree of Doctor of Philosophy in Biological Sciences at the University of Waikato by Darin Lee Sutherland The University of Waikato 2006 ABSTRACT This thesis examines phylogenetic patterns in three New Zealand amphipod taxa in relation to current geographic distributions and historical climatic (e.g. glaciation, marine inundation) and geological (e.g. mountain building) events using DNA sequencing and distributional data. It also examines how recognition behaviour can be used to delineate potential species boundaries and to assess the role of sexual selection. The endemic genus Phreatogammarus has been found in only a limited number of sites and is not very abundant. -
Taxonomic Status of Amphipod Crustaceans in the South China Sea with a Checklist of Known Species
THE RAFFLES BULLETIN OF ZOOLOGY 2000 Supplement No. 8: 309-342 © National University of Singapore TAXONOMIC STATUS OF AMPHIPOD CRUSTACEANS IN THE SOUTH CHINA SEA WITH A CHECKLIST OF KNOWN SPECIES J.K. Lowry Division of Invertebrate Zoology, Australian Museum, 6 College Street, Sydney, NSW 2000, Australia ABSTRACT. - The Amphipoda of the South China Sea are catalogued. Based on the literature, 48 families, 113 genera and 272 species are recorded. Gammaridean amphipods have effectively been studied from only three areas - Hong Kong, several sites in Vietnam and several sites in the Philippines. There are additional small study sites in Singapore and the Spratly Islands. Based on these studies 31 gammaridean families, 67 genera and 153 species have been recorded, the vast majority of these taxa come from the Central-western and North-western South China Sea. In nearly all recorded families the genera and species appear to be poorly represented. By comparison Ruffo (1982; 1989; 1993) has reported 51 families, 157 genera and 450 species of gammaridean and caprellidean amphipods from the Mediterranean Sea. Important habitats for amphipods such as algal forests, seagrass meadows and coral reefs have not been studied in the South China Sea. No caprellidean or ingolfiellidean amllhipods have been reported. Hyperiidean amphipods appear to be more widely collected and studied (17 hyperiidean families, 46 genera and 119 species). More than half of all hyperiidean families have been reported from this area. Much work needs to be done in the South China Sea before amphipod biodiversity can be properly assessed and understood. KEYWORDS. - Amphipods, South China Sea, checklist. -
Amphipoda of the NEP
Amphipoda of the Northeast Pacific (Equator to Aleutians, intertidal to abyss): XXIII. Oediceratoidea - a review Donald B. Cadien, LACSD 22July2004 (revised 27January2015) Preface The purpose of this review is to bring together information on all of the species reported to occur in the NEP fauna. It is not a straight path to the identification of your unknown animal. It is a resource guide to assist you in making the required identification in full knowledge of what the possibilities are. Never forget that there are other, as yet unreported species from the coverage area; some described, some new to science. The natural world is wonderfully diverse, and we have just scratched its surface. Introduction to the Oediceratoidea They are a moderately old group, stemming from the middle-upper Cretaceous (Bousfield 1982b), but have a preponderance of apomorphic character states (Bousfield 1983). The superfamily consists primarily of the family Oedicerotidae, which is distributed world-wide, and two small families of southern distribution neither with NEP representatives, the Exoedicerotidae and the Paracalliopiidae (Bousfield and Shih 1994). The Exoedicerotidae are viewed as the most primitive members of the superfamily (J. L. Barnard and Drummond 1984). The Paracalliopiidae also seem generally less apomorphic than the Oedicerotidae. Diagnosis of the Oediceratoidea “Moderately apomorphic, strongly rostrate, strongly fossorial marine amphipods having a moderately dimorphic terminal male stage; brush setae borne on peduncles of antennae 1 and 2 -
Conservation Status of New Zealand Freshwater Invertebrates, 2013
NEW ZEALAND THREAT CLASSIFICATION SERIES 8 Conservation status of New Zealand freshwater invertebrates, 2013 Natasha Grainger, Kevin Collier, Rod Hitchmough, Jon Harding, Brian Smith and Darin Sutherland Cover: Polyplectropus sp. Photo: Brian Smith, NIWA. New Zealand Threat Classification Series is a scientific monograph series presenting publications related to the New Zealand Threat Classification System (NZTCS). Most will be lists providing NZTCS status of members of a plant or animal group (e.g. algae, birds, spiders). There are currently 23 groups, each assessed once every 3 years. After each three-year cycle there will be a report analysing and summarising trends across all groups for that listing cycle. From time to time the manual that defines the categories, criteria and process for the NZTCS will be reviewed. Publications in this series are considered part of the formal international scientific literature. This report is available from the departmental website in pdf form. Titles are listed in our catalogue on the website, refer www.doc.govt.nz under Publications, then Science & technical. © Copyright May 2014, New Zealand Department of Conservation ISSN 2324–1713 (web PDF) ISBN 978–0–478–15015–5 (web PDF) This report was prepared for publication by the Publishing Team; editing and layout by Lynette Clelland. Publication was approved by the Deputy Director-General, Science and Technical Group, Department of Conservation, Wellington, New Zealand. Published by Publishing Team, Department of Conservation, PO Box 10420, The Terrace, -
AMPHIPOD Newsletter 36 (2012)
Amphipod newsletter 36 AMPHIPOD newsletter 36 (2012) Facebook and other List of new genera Feature Interview Meetings and info media A list of the new genera of our new Feature starts out with 15th ICA, Poland 2013 Amphipods everywhere! Amphipoda since AN10 (1970) Wim Vader. Page 58 Page 2 Page 34 Page 55 Palermo 2011. Bibliography Page 59 Page 4 GREETINGS FROM THE EDITORS In addition to the bibliography in this newsletter is a list of the new genera of Amphipoda since AN10 (1970). One update we hope you will find useful in this Newsletter are direct links to some of the papers (those underlined in blue) in the Bibliography. Also included in this Newsletter is a list of new amphipod genera described since AN 10 (1970). This list is provided to you from the hard and loving work of Wim. Thank you Wim! It is also available in excel format. Please look for it on the webpage. New to this Newsletter is a section titled – an Amphipodologist Interview. We have long thought about how to highlight the career and personality of one of your colleagues. To open this segment, we thought it would be most appropriate to interview someone very close to us – Wim Vader. We hope you enjoy this segment. Look for it in future AN’s. And if there is anyone whom you would like us to interview, please send your suggestions to co-editor Adam Baldinger. Reports on recent amphipod conference/meetings are included. And information on upcoming meetings, namely the 15th International Colloquium on Amphipoda to be held 2-7 September 2013 in Szczawnica, Poland is provided as well.