Inhibition of Mitochondrial Respiratory Complex I by Nitric Oxide, Peroxynitrite and S-Nitrosothiols
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Oxygen Is Instrumental for Biological Signaling: an Overview
Review Oxygen Is Instrumental for Biological Signaling: An Overview John T. Hancock Department of Applied Sciences, University of the West of England, Bristol BS16 1QY, UK; [email protected]; Tel.: +44-(0)117-328-2475 Abstract: Control of cellular function is extremely complex, being reliant on a wide range of compo- nents. Several of these are small oxygen-based molecules. Although reactive compounds containing oxygen are usually harmful to cells when accumulated to relatively high concentrations, they are also instrumental in the control of the activity of a myriad of proteins, and control both the upregulation and downregulation of gene expression. The formation of one oxygen-based molecule, such as the superoxide anion, can lead to a cascade of downstream generation of others, such as hydrogen · peroxide (H2O2) and the hydroxyl radical ( OH), each with their own reactivity and effect. Nitrogen- based signaling molecules also contain oxygen, and include nitric oxide (NO) and peroxynitrite, both instrumental among the suite of cell signaling components. These molecules do not act alone, but form part of a complex interplay of reactions, including with several sulfur-based compounds, such as glutathione and hydrogen sulfide (H2S). Overaccumulation of oxygen-based reactive compounds may alter the redox status of the cell and lead to programmed cell death, in processes referred to as oxidative stress, or nitrosative stress (for nitrogen-based molecules). Here, an overview of the main oxygen-based molecules involved, and the ramifications of their production, is given. Keywords: carbon monoxide; hydrogen peroxide; hydroxyl radicals; hydrogen sulfide; NADPH oxidase; nitric oxide; peroxynitrite; redox; superoxide Citation: Hancock, J.T. -
Mitochondrial Supercomplex Assembly Promotes Breast and Endometrial Tumorigenesis by Metabolic Alterations and Enhanced Hypoxia Tolerance
ARTICLE https://doi.org/10.1038/s41467-019-12124-6 OPEN Mitochondrial supercomplex assembly promotes breast and endometrial tumorigenesis by metabolic alterations and enhanced hypoxia tolerance Kazuhiro Ikeda1, Kuniko Horie-Inoue1, Takashi Suzuki2, Rutsuko Hobo1,3, Norie Nakasato1,3, Satoru Takeda3,4 & Satoshi Inoue 1,5 1234567890():,; Recent advance in cancer research sheds light on the contribution of mitochondrial respiration in tumorigenesis, as they efficiently produce ATP and oncogenic metabolites that will facilitate cancer cell growth. Here we show that a stabilizing factor for mitochondrial supercomplex assembly, COX7RP/COX7A2L/SCAF1, is abundantly expressed in clinical breast and endometrial cancers. Moreover, COX7RP overexpression associates with prog- nosis of breast cancer patients. We demonstrate that COX7RP overexpression in breast and endometrial cancer cells promotes in vitro and in vivo growth, stabilizes mitochondrial supercomplex assembly even in hypoxic states, and increases hypoxia tolerance. Metabo- lomic analyses reveal that COX7RP overexpression modulates the metabolic profile of cancer cells, particularly the steady-state levels of tricarboxylic acid cycle intermediates. Notably, silencing of each subunit of the 2-oxoglutarate dehydrogenase complex decreases the COX7RP-stimulated cancer cell growth. Our results indicate that COX7RP is a growth- regulatory factor for breast and endometrial cancer cells by regulating metabolic pathways and energy production. 1 Division of Gene Regulation and Signal Transduction, Research Center for Genomic Medicine, Saitama Medical University, 1397-1 Yamane, Hidaka-shi, Saitama 350-1241, Japan. 2 Departments of Pathology and Histotechnology, Tohoku University Graduate School of Medicine, 2-1 Seiryo-machi, Aoba-ku, Sendai 980-8575, Japan. 3 Department of Obstetrics and Gynecology, Saitama Medical Center, Saitama Medical University, 1981, Tsujido, Kamoda, Kawagoe-shi, Saitama 350-8550, Japan. -
Analyzing the Potential Biological Determinants of Autism Spectrum Disorders: from Neuroinflammation to Kynurenines Pathway
Preprints (www.preprints.org) | NOT PEER-REVIEWED | Posted: 19 July 2020 doi:10.20944/preprints202007.0425.v1 Peer-reviewed version available at Brain Sci. 2020, 10, 631; doi:10.3390/brainsci10090631 Review Analyzing the potential biological determinants of Autism Spectrum Disorders: from Neuroinflammation to Kynurenines Pathway Rosa Savino1, Marco Carotenuto2, A. Nunzia Polito1, *, Sofia Di Noia1, Marzia Albenzio6,Alessia Scarinci3, Antonio Ambrosi4, Francesco Sessa5, Nicola Tartaglia4 and Giovanni Messina5 1 Department of Woman and Child, Neuropsychiatry for Child and Adolescent Unit, General Hospital “Riuniti” of Foggia, 71122 Foggia, Italy. [email protected] 2Department of Mental Health, Physical and Preventive Medicine, Clinic of Child and Adolescent Neuropsychiatry, Università degli Studi della Campania "Luigi Vanvitelli", 81100 Caserta, Italy. [email protected] 3Department of Education Sciences, Psychology and Communication, University of Bari, 70121 Bari, Italy. [email protected] 4Department of Medical and Surgical Sciences, University of Foggia, Viale Pinto, 71122, Foggia, Italy. [email protected] 5Department of Clinical and Experimental Medicine, University of Foggia, 71122 Foggia, Italy. [email protected] 6Department of the Sciences of Agriculture, Food and Environment, University of Foggia, Via Napoli, 25, 71100 Foggia, Italy. [email protected] * Correspondence: [email protected], tel: 0881732364. © 2020 by the author(s). Distributed under a Creative Commons CC BY license. Preprints (www.preprints.org) | NOT PEER-REVIEWED | Posted: 19 July 2020 doi:10.20944/preprints202007.0425.v1 Peer-reviewed version available at Brain Sci. 2020, 10, 631; doi:10.3390/brainsci10090631 2 of 32 Abstract: Autism Spectrum Disorder etiopathogenesis is still unclear and no effective preventive and treatment measures have been identified. -
Structure of the Intact 14-Subunit Human Cytochrome C Oxidase
www.nature.com/cr www.cell-research.com ARTICLE Structure of the intact 14-subunit human cytochrome c oxidase Shuai Zong 1, Meng Wu1, Jinke Gu1, Tianya Liu1, Runyu Guo1 and Maojun Yang1,2 Respiration is one of the most basic features of living organisms, and the electron transport chain complexes are probably the most complicated protein system in mitochondria. Complex-IV is the terminal enzyme of the electron transport chain, existing either as randomly scattered complexes or as a component of supercomplexes. NDUFA4 was previously assumed as a subunit of complex-I, but recent biochemical data suggested it may be a subunit of complex-IV. However, no structural evidence supporting this notion was available till now. Here we obtained the 3.3 Å resolution structure of complex-IV derived from the human supercomplex I1III2IV1 and assigned the NDUFA4 subunit into complex-IV. Intriguingly, NDUFA4 lies exactly at the dimeric interface observed in previously reported crystal structures of complex-IV homodimer which would preclude complex- IV dimerization. Combining previous structural and biochemical data shown by us and other groups, we propose that the intact complex-IV is a monomer containing 14 subunits. Cell Research (2018) 28:1026–1034; https://doi.org/10.1038/s41422-018-0071-1 INTRODUCTION states under physiological conditions, either being assembled into Mitochondria are critical to many cellular activities. Respiration is supercomplexes or freely scattered on mitochondrial inner the central function of mitochondria, and is exquisitely regulated membrane.36 NDUFA4 was originally considered as a subunit of in multiple ways in response to varying cell conditions.1–3 The Complex-I37 but was proposed to belong to Complex-IV recently.38 assembly of respiratory chain complexes, Complex I–IV (CI, NADH: However, the precise location of NDUFA4 in CIV remains unknown, ubiquinone oxidoreductase; CII, succinate:ubiquinone oxidoreduc- and thus this notion still lacks structural support. -
Hydrogen Sulfide Metabolite, Sodium Thiosulfate
International Journal of Molecular Sciences Review Hydrogen Sulfide Metabolite, Sodium Thiosulfate: Clinical Applications and Underlying Molecular Mechanisms Max Y. Zhang 1,2, George J. Dugbartey 1,2,3, Smriti Juriasingani 1,3 and Alp Sener 1,2,3,4,* 1 Matthew Mailing Center for Translational Transplant Studies, London Health Sciences Center, Western University, London, ON N6A 5A5, Canada; [email protected] (M.Y.Z.); [email protected] (G.J.D.); [email protected] (S.J.) 2 London Health Sciences Center, Multi-Organ Transplant Program, Western University, London, ON N6A 5A5, Canada 3 London Health Sciences Center, Department of Surgery, Division of Urology, Western University, London, ON N6A 5A5, Canada 4 Department of Microbiology & Immunology, Schulich School of Medicine & Dentistry, University of Western Ontario, London, ON N6A 3K7, Canada * Correspondence: [email protected]; Tel.: +1(519) 6633352 Abstract: Thiosulfate in the form of sodium thiosulfate (STS) is a major oxidation product of hydrogen sulfide (H2S), an endogenous signaling molecule and the third member of the gasotransmitter family. STS is currently used in the clinical treatment of acute cyanide poisoning, cisplatin toxicities in cancer therapy, and calciphylaxis in dialysis patients. Burgeoning evidence show that STS has antioxidant and anti-inflammatory properties, making it a potential therapeutic candidate molecule that can target multiple molecular pathways in various diseases and drug-induced toxicities. This review Citation: Zhang, M.Y.; Dugbartey, discusses the biochemical and molecular pathways in the generation of STS from H2S, its clinical G.J.; Juriasingani, S.; Sener, A. usefulness, and potential clinical applications, as well as the molecular mechanisms underlying these Hydrogen Sulfide Metabolite, clinical applications and a future perspective in kidney transplantation. -
Thiol Switches in Mitochondria: Operation and Physiological Relevance
Biol. Chem. 2015; aop Review Jan Riemer * , Markus Schwarzl ä nder * , Marcus Conrad * and Johannes M. Herrmann * Thiol switches in mitochondria: operation and physiological relevance Abstract : Mitochondria are a major source of reactive Introduction – mitochondria oxygen species (ROS) in the cell, particularly of super- oxide and hydrogen peroxide. A number of dedicated contain two distinct redox networks enzymes regulate the conversion and consumption of superoxide and hydrogen peroxide in the intermem- Mitochondria are essential organelles of eukaryotic cells. brane space and the matrix of mitochondria. Neverthe- They produce not only the bulk of cellular energy in the less, hydrogen peroxide can also interact with many other form of ATP, but they also generate numerous important mitochondrial enzymes, particularly those with reactive metabolites and cofactors, and they serve as critical sign- cysteine residues, modulating their reactivity in accord- aling stations that, for example, integrate cellular signals ance with changes in redox conditions. In this review we to initiate apoptosis. In turn, mitochondria also commu- will describe the general redox systems in mitochondria nicate their metabolic and fitness state to the remainder of animals, fungi and plants and discuss potential target of the cell to trigger cellular adaptation processes. proteins that were proposed to contain regulatory thiol Mitochondria contain two distinct aqueous sub- switches. compartments, the intermembrane space (IMS) and the matrix. Both subcompartments differ strongly with Keywords: glutathione; hydrogen peroxide; mitochon- respect to their biological activity, their protein composi- dria; NADPH; reactive oxygen species; redox regulation; tion ( Herrmann and Riemer, 2010 ) as well as their redox ROS; signaling; thiol switch. properties. -
Mitochondrial Probe Methyltriphenylphosphonium (TPMP) Inhibits the Krebs Cycle Enzyme 2- Oxoglutarate Dehydrogenase
RESEARCH ARTICLE Mitochondrial Probe Methyltriphenylphosphonium (TPMP) Inhibits the Krebs Cycle Enzyme 2- Oxoglutarate Dehydrogenase Moustafa Elkalaf1,4, Petr Tůma2,4, Martin Weiszenstein3,4, Jan Polák3,4, Jan Trnka1,2,4* 1 Laboratory for Metabolism and Bioenergetics, Third Faculty of Medicine, Charles University, Prague, Czech Republic, 2 Department of Biochemistry, Cell and Molecular Biology, Third Faculty of Medicine, a11111 Charles University, Prague, Czech Republic, 3 Department of Sport Medicine, Third Faculty of Medicine, Charles University, Prague, Czech Republic, 4 Centre for Research on Diabetes, Metabolism and Nutrition, Third Faculty of Medicine, Charles University, Prague, Czech Republic * [email protected] OPEN ACCESS Abstract ů Citation: Elkalaf M, T ma P, Weiszenstein M, Polák Methyltriphenylphosphonium (TPMP) salts have been widely used to measure the mito- J, Trnka J (2016) Mitochondrial Probe + Methyltriphenylphosphonium (TPMP) Inhibits the chondrial membrane potential and the triphenylphosphonium (TPP ) moiety has been Krebs Cycle Enzyme 2-Oxoglutarate attached to many bioactive compounds including antioxidants to target them into mitochon- Dehydrogenase. PLoS ONE 11(8): e0161413. dria thanks to their high affinity to accumulate in the mitochondrial matrix. The adverse doi:10.1371/journal.pone.0161413 effects of these compounds on cellular metabolism have been insufficiently studied and are Editor: Janine Santos, National Institute of still poorly understood. Micromolar concentrations of TPMP cause a progressive -
Mitochondrial Peroxynitrite Generation Is Mainly Driven by Superoxide Steady-State Concentration Rather Than by Nitric Oxide Steady-State Concentration
International Journal of Molecular Biology: Open Access Review Article Open Access Mitochondrial peroxynitrite generation is mainly driven by superoxide steady-state concentration rather than by nitric oxide steady-state concentration Abstract Volume 3 Issue 2 - 2018 - - In biological systems, ONOO production depends on production rates of NO and O2 , and on the reactions of these two free radicals with other biological components, which Laura B Valdez,1,2 Silvina S Bombicino,1 Darío limit the local concentrations of NO and O -. In mitochondria, O - is generated through 2 2 E Iglesias,1,2 Ivana Rukavina Mikusic A,1,2 the auto oxidation of semiquinones at Complexes I and III, and it may suffer the SOD- 1,2 catalyzed dismutation reaction to produce H O or react with NO in a classical termination Alberto Boveris 2 2 1 reaction between free radicals. These diffusion-controlled reactions kinetically compete for University of Buenos Aires, Physical Chemistry Division, Argentina O - degradation. Results from our laboratory have shown that even in physiopathological 2 2 situations in which NO production is reduced, such as the mitochondrial dysfunction University of Buenos Aires, Institute of Biochemistry and Molecular Medicine (IBIMOL), Argentina associated to stunned heart, mitochondrial ONOO- production rate may be slightly - - increased if the steady-state concentration of O2 is augmented. The enhancement in O2 concentration leads to an increase in its degradation by reaction with NO, decreasing NO Correspondence: Laura B Valdez, Cátedra de Fisicoquímica, bioavailability and increasing ONOO- production rate. Therefore, mitochondrial ONOO- Facultad de Farmacia y Bioquímica, Universidad de Buenos Aires, Junín 956, C1113AAD, Buenos Aires, Argentina, Tel+ 54-11-5287- generation is mainly driven by O - rather than by NO steady-state concentrations. -
Prognostic Implications and Molecular Associations of NADH Dehydrogenase Subunit 4 (ND4) Mutations in Acute Myeloid Leukemia
Leukemia (2012) 26, 289–295 & 2012 Macmillan Publishers Limited All rights reserved 0887-6924/12 www.nature.com/leu ORIGINAL ARTICLE Prognostic implications and molecular associations of NADH dehydrogenase subunit 4 (ND4) mutations in acute myeloid leukemia F Damm1, T Bunke1, F Thol1, B Markus1, K Wagner1,GGo¨hring2, B Schlegelberger2, G Heil1,3, CWM Reuter1,KPu¨llmann1, RF Schlenk4,KDo¨hner4, M Heuser1, J Krauter1,HDo¨hner4, A Ganser1 and MA Morgan1 1Department of Hematology, Hemostasis, Oncology, and Stem Cell Transplantation, Hannover Medical School, Hannover, Germany; 2Institute of Cell and Molecular Pathology, Hannover Medical School, Hannover, Germany; 3Department of Internal Medicine V, Klinikum Lu¨denscheid, Lu¨denscheid, Germany and 4Department of Internal Medicine III, University Hospital of Ulm, Ulm, Germany To study the prevalence and prognostic importance of muta- novel somatic mutations affecting other genes, such as IDH1/ tions in NADH dehydrogenase subunit 4 (ND4), a mitochondrial IDH2 or DNMT3A, suggesting that multiple genetic aberrations encoded transmembrane component of the electron transport contribute to leukemic clone evolution and expansion.4–6 Using chain respiratory Complex I, 452 AML patients were examined for ND4 mutations by direct sequencing. The prognostic impact the same approach, mutations in the mitochondrial NADH of ND4 mutations was evaluated in the context of other clinical dehydrogenase subunit 4 (ND4) were described in 3 out of prognostic markers and genetic risk factors. In all, 29 of 452 93 AML patients.6 patients (6.4%) had either somatic (n ¼ 12) or germline (n ¼ 17) Mitochondria contribute to several key components of ND4 mutations predicted to affect translation. -
On the Liquid Chemistry of the Reactive Nitrogen Species Peroxynitrite and Nitrogen Dioxide Generated by Physical Plasmas
biomolecules Article On the Liquid Chemistry of the Reactive Nitrogen Species Peroxynitrite and Nitrogen Dioxide Generated by Physical Plasmas Giuliana Bruno 1, Sebastian Wenske 1, Jan-Wilm Lackmann 2, Michael Lalk 3 , Thomas von Woedtke 4 and Kristian Wende 1,* 1 Centre for Innovation Competence (ZIK) Plasmatis, Leibniz Institute for Plasma Science and Technology (INP Greifswald), 17489 Greifswald, Germany; [email protected] (G.B.); [email protected] (S.W.) 2 Cluster of Excellence Cellular Stress Responses in Aging-Associated Diseases, University of Cologne, 50931 Cologne, Germany; [email protected] 3 Institute of Biochemistry, University of Greifswald, 17487 Greifswald, Germany; [email protected] 4 Leibniz Institute for Plasma Science and Technology, 17489 Greifswald, Germany; [email protected] * Correspondence: [email protected] Received: 9 November 2020; Accepted: 9 December 2020; Published: 16 December 2020 Abstract: Cold physical plasmas modulate cellular redox signaling processes, leading to the evolution of a number of clinical applications in recent years. They are a source of small reactive species, including reactive nitrogen species (RNS). Wound healing is a major application and, as its physiology involves RNS signaling, a correlation between clinical effectiveness and the activity of plasma-derived RNS seems evident. To investigate the type and reactivity of plasma-derived RNS in aqueous systems, a model with tyrosine as a tracer was utilized. By high-resolution mass spectrometry, 26 different tyrosine derivatives including the physiologic nitrotyrosine were identified. The product pattern was distinctive in terms of plasma parameters, especially gas phase composition. By scavenger experiments and isotopic labelling, gaseous nitric dioxide radicals and liquid phase peroxynitrite ions were determined as dominant RNS. -
Role of PGC-1 in the Mitochondrial NAD+ Pool in Metabolic Diseases
International Journal of Molecular Sciences Review Role of PGC-1α in the Mitochondrial NAD+ Pool in Metabolic Diseases Jin-Ho Koh * and Jong-Yeon Kim * Department of Physiology, College of Medicine, Yeungnam University, Daegu 42415, Korea * Correspondence: [email protected] (J.-H.K.); [email protected] (J.-Y.K.) Abstract: Mitochondria play vital roles, including ATP generation, regulation of cellular metabolism, and cell survival. Mitochondria contain the majority of cellular nicotinamide adenine dinucleotide (NAD+), which an essential cofactor that regulates metabolic function. A decrease in both mitochon- dria biogenesis and NAD+ is a characteristic of metabolic diseases, and peroxisome proliferator- activated receptor γ coactivator 1-α (PGC-1α) orchestrates mitochondrial biogenesis and is involved in mitochondrial NAD+ pool. Here we discuss how PGC-1α is involved in the NAD+ synthesis pathway and metabolism, as well as the strategy for increasing the NAD+ pool in the metabolic disease state. Keywords: mitochondria; PGC-1α; NAD+, SIRTs; metabolic disease 1. Introduction Mitochondria are powerhouses that generate the majority of cellular ATP via fatty acid oxidation, tricarboxylic acid (TCA) cycle, electron transport chain (ETC), and ATP synthase. Mitochondrial dysfunction is linked to metabolic diseases and health issues, including Citation: Koh, J.-H.; Kim, J.-Y. Role insulin resistance and type 2 diabetes, cancer, Alzheimer’s disease, and others [1–3]. α of PGC-1 in the Mitochondrial Nicotinamide adenine dinucleotide (NAD+) is an essential cofactor that regulates NAD+ Pool in Metabolic Diseases. Int. metabolic function, and it is an electron carrier and signaling molecule involved in response J. Mol. Sci. 2021, 22, 4558. -
A Common East Asian-Speci C ALDH2 Mutation Causes
A common East Asian-specic ALDH2 mutation causes obesity and insulin resistance: therapeutic effect of reducing toxic aldehydes by ALDH2 activation Yi-Cheng Chang ( [email protected] ) College of Medicine, National Taiwan University https://orcid.org/0000-0002-8077-5011 Hsiao-Lin Lee College of Medicine, National Taiwan University Wenjin Yang Foresee Pharmaceuticals, Co. Ltd Meng-Lun Hsieh College of Medicine, National Taiwan University Cai-Cin Liu College of Medicine, National Taiwan University Tung-Yuan Lee College of Medicine, National Taiwan University Jing-Yong Huang College of Medicine, National Taiwan University Jiun-Yi Nong College of Medicine, National Taiwan University Fu-An Li Institute of Biomedical Sciences, Academia Sinica https://orcid.org/0000-0002-0580-7765 Hsiao-Li Chuang National Laboratory Animal Center, National Applied Research Laboratories Zhi-Zhong Ding College of Medicine, National Taiwan University Wei-Lun Su College of Medicine, National Taiwan University Li-Yun Chueh College of Medicine, National Taiwan University Yi-Ting Tsai Laboratory Animal Center, College of Medicine, National Taiwan University Che-Hong Chen Department of Chemical and Systems Biology, Stanford University School of Medicine Page 1/26 Daria Mochly-Rosen Stanford University School of Medicine https://orcid.org/0000-0002-6691-8733 Lee-Ming Chuang National Taiwan University Hospital Article Keywords: Acetaldehyde Metabolizing Enzyme, Missense Mutation, Homozygous Knock-in Mice, Thermogenesis, Substrate-enzyme Collision, Glucose Homeostasis Posted Date: December 2nd, 2020 DOI: https://doi.org/10.21203/rs.3.rs-104384/v1 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Page 2/26 Abstract Obesity and type 2 diabetes have reached pandemic proportion.