Review Article a Protocell Design for Bioaccumulation Applications
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
New Opportunities Revealed by Biotechnological Explorations of Extremophiles - Mircea Podar and Anna-Louise Reysenbach
BIOTECHNOLOGY – Vol .III – New Opportunities Revealed by Biotechnological Explorations of Extremophiles - Mircea Podar and Anna-Louise Reysenbach NEW OPPORTUNITIES REVEALED BY BIOTECHNOLOGICAL EXPLORATIONS OF EXTREMOPHILES Mircea Podar and Anna-Louise Reysenbach Department of Biology, Portland State University, Portland, OR 97201, USA. Keywords: extremophiles, genomics, biotechnology, enzymes, metagenomics. Contents 1. Introduction 2. Extremophiles and Biomolecules 3. Extremophile Genomics Exposing the Biotechnological Potential 4. Tapping into the Hidden Biotechnological Potential through Metagenomics 5. Unexplored Frontiers and Future Prospects Acknowledgements Glossary Bibliography Biographical Sketches Summary Over the past few decades the extremes at which life thrives has continued to challenge our understanding of biochemistry, biology and evolution. As more new extremophiles are brought into laboratory culture, they have provided a multitude of new potential applications for biotechnology. Furthermore, more recently, innovative culturing approaches, environmental genome sequencing and whole genome sequencing have provided new opportunities for biotechnological exploration of extremophiles. 1. Introduction Organisms that live at the extremes of pH (>pH 8.5,< pH 5.0), temperature (>45°C, <15°C), pressure (>500 atm), salinity (>1.0M NaCl) and in high concentrations of recalcitrant substances or heavy metals (extremophiles) represent one of the last frontiers for biotechnological and industrial discovery. As we learn more about the -
Intelligent Design, Abiogenesis, and Learning from History: Dennis R
Author Exchange Intelligent Design, Abiogenesis, and Learning from History: Dennis R. Venema A Reply to Meyer Dennis R. Venema Weizsäcker’s book The World View of Physics is still keeping me very busy. It has again brought home to me quite clearly how wrong it is to use God as a stop-gap for the incompleteness of our knowledge. If in fact the frontiers of knowledge are being pushed back (and that is bound to be the case), then God is being pushed back with them, and is therefore continually in retreat. We are to find God in what we know, not in what we don’t know; God wants us to realize his presence, not in unsolved problems but in those that are solved. Dietrich Bonhoeffer1 am thankful for this opportunity to nature, is the result of intelligence. More- reply to Stephen Meyer’s criticisms over, this assertion is proffered as the I 2 of my review of his book Signature logical basis for inferring design for the in the Cell (hereafter Signature). Meyer’s origin of biological information: if infor- critiques of my review fall into two gen- mation only ever arises from intelli- eral categories. First, he claims I mistook gence, then the mere presence of Signature for an argument against bio- information demonstrates design. A few logical evolution, rendering several of examples from Signature make the point my arguments superfluous. Secondly, easily: Meyer asserts that I have failed to refute … historical scientists can show that his thesis by not providing a “causally a presently acting cause must have adequate alternative explanation” for the been present in the past because the origin of life in that the few relevant cri- proposed candidate is the only known tiques I do provide are “deeply flawed.” cause of the effect in question. -
The Hidden Kingdom
INTRODUCTION Fungi—The Hidden Kingdom OBJECTIVE • To provide students with basic knowledge about fungi Activity 0.1 BACKGROUND INFORMATION The following text provides an introduction to the fungi. It is written with the intention of sparking curiosity about this GRADES fascinating biological kingdom. 4-6 with a K-3 adaptation TEACHER INSTRUCTIONS TYPE OF ACTIVITY 1. With your class, brainstorm everything you know about fungi. Teacher read/comprehension 2. For younger students, hand out the question sheet before you begin the teacher read and have them follow along and MATERIALS answer the questions as you read. • copies of page 11 3. For older students, inform them that they will be given a • pencils brainteaser quiz (that is not for evaluation) after you finish reading the text. VOCABULARY 4. The class can work on the questions with partners or in groups bioremediation and then go over the answers as a class. Discuss any chitin particularly interesting facts and encourage further fungi independent research. habitat hyphae K-3 ADAPTATION kingdom 1. To introduce younger students to fungi, you can make a KWL lichens chart either as a class or individually. A KWL chart is divided moulds into three parts. The first tells what a student KNOWS (K) mushrooms about a subject before it is studied in class. The second part mycelium tells what the student WANTS (W) to know about that subject. mycorrhizas The third part tells what the child LEARNED (L) after studying nematodes that subject. parasitic fungi 2. Share some of the fascinating fungal facts presented in the photosynthesis “Fungi—The Hidden Kingdom” text with your students. -
Framing Major Prebiotic Transitions As Stages of Protocell Development: Three Challenges for Origins-Of-Life Research
Framing major prebiotic transitions as stages of protocell development: three challenges for origins-of-life research Ben Shirt-Ediss1, Sara Murillo-Sánchez2,3 and Kepa Ruiz-Mirazo*2,3 Commentary Open Access Address: Beilstein J. Org. Chem. 2017, 13, 1388–1395. 1Interdisciplinary Computing and Complex BioSystems Group, doi:10.3762/bjoc.13.135 University of Newcastle, UK, 2Dept. Logic and Philosophy of Science, University of the Basque Country, Spain and 3Biofisika Institute Received: 16 February 2017 (CSIC, UPV-EHU), Spain Accepted: 27 June 2017 Published: 13 July 2017 Email: Kepa Ruiz-Mirazo* - [email protected] This article is part of the Thematic Series "From prebiotic chemistry to molecular evolution". * Corresponding author Guest Editor: L. Cronin Keywords: functional integration; origins of life; prebiotic evolution; protocells © 2017 Shirt-Ediss et al.; licensee Beilstein-Institut. License and terms: see end of document. Abstract Conceiving the process of biogenesis as the evolutionary development of highly dynamic and integrated protocell populations provides the most appropriate framework to address the difficult problem of how prebiotic chemistry bridged the gap to full-fledged living organisms on the early Earth. In this contribution we briefly discuss the implications of taking dynamic, functionally inte- grated protocell systems (rather than complex reaction networks in bulk solution, sets of artificially evolvable replicating molecules, or even these same replicating molecules encapsulated in passive compartments) -
Droplet Microfluidics for Tumor Drug‐Related Studies And
REVIEW www.global-challenges.com Droplet Microfluidics for Tumor Drug-Related Studies and Programmable Artificial Cells Pantelitsa Dimitriou,* Jin Li, Giusy Tornillo, Thomas McCloy, and David Barrow* robotics, have promoted the use of in vitro Anticancer drug development is a crucial step toward cancer treatment, tumor models in high-throughput drug that requires realistic predictions of malignant tissue development and screenings.[2,3] High-throughput screens sophisticated drug delivery. Tumors often acquire drug resistance and drug for anticancer drugs have been, for a long efficacy, hence cannot be accurately predicted in 2D tumor cell cultures. time, limited to 2D culture of tumor cells, grown as a monolayer on the bottom of On the other hand, 3D cultures, including multicellular tumor spheroids a well of a microtiter plate. Compared to (MCTSs), mimic the in vivo cellular arrangement and provide robust 2D cell cultures, 3D culture systems can platforms for drug testing when grown in hydrogels with characteristics more faithfully model cell-cell interactions, similar to the living body. Microparticles and liposomes are considered smart matrix deposition and tumor microenvi- drug delivery vehicles, are able to target cancerous tissue, and can release ronments, including more physiological flow conditions, oxygen and nutrient gra- entrapped drugs on demand. Microfluidics serve as a high-throughput dients.[4] Therefore, 3D cultures have tool for reproducible, flexible, and automated production of droplet-based recently begun to be incorporated into microscale constructs, tailored to the desired final application. In this high-throughput drug screenings, with the review, it is described how natural hydrogels in combination with droplet aim of better predicting drug efficacy and microfluidics can generate MCTSs, and the use of microfluidics to produce improving the prioritization of candidate tumor targeting microparticles and liposomes. -
An Introduction to the Viruses
Chapter 1 An introduction to the viruses Viruses are obligate intracellular parasites of man, other animals, plants and bacteria. They can only multiply within cells, and thus differ from bacteria, which can multiply in tissues in an extracellular position, and also in artificial culture media in the laboratory. It has always been recognized that viruses are distinct from the bacteria, but originally other groups of infective agents were included among the viruses which are now known to be organisms of a different and more complex nature. These included the Chlamydiae, organisms causing diseases such as lymphogranuloma venereum and trachoma, and the Rickettsiae, the causative agents of typhus and related infections. The specific treatment of infections caused by these two groups of agents will not be considered in this work, which is restricted to the chemotherapy of infections caused by the true viruses. The Chlamydiae and Rickettsiae are complete organisms, with cell walls, which possess both types of nucleic acid, enzyme systems which function within their cytoplasm, and a number of cell organelles. The viruses, on the other hand, possess either DNA or RNA as their genetic material, but not both. In some cases they contain enzymes, but these exert their functions within the host cell after the virus particle has under gone a process of dissolution during the early stage of infection. Except in the case of the arenaviruses, a group which contains the virus of Lassa fever, the virus particles do not contain organelles. A virus is thus much more rudimentary in structure, and relies upon the host cell to provide the systems for synthesizing its components which it does not possess itself. -
Acquisition of 1,000 Eubacterial Genes Physiologically Transformed a Methanogen at the Origin of Haloarchaea
Acquisition of 1,000 eubacterial genes physiologically transformed a methanogen at the origin of Haloarchaea Shijulal Nelson-Sathia, Tal Daganb, Giddy Landana,b, Arnold Janssenc, Mike Steeld, James O. McInerneye, Uwe Deppenmeierf, and William F. Martina,1 aInstitute of Molecular Evolution, bInstitute of Genomic Microbiology, cMathematisches Institut, Heinrich Heine University, 40225 Düsseldorf, Germany; dBiomathematics Research Centre, University of Canterbury, Private Bag 4800, Christchurch, New Zealand; eDepartment of Biology, National University of Ireland, Maynooth, Co. Kildare, Ireland; and fInstitute of Microbiology and Biotechnology, University of Bonn, 53115 Bonn, Germany Edited* by W. Ford Doolittle, Dalhousie University, Halifax, NS, Canada, and approved October 25, 2012 (received for review May 29, 2012) Archaebacterial halophiles (Haloarchaea) are oxygen-respiring involved in the assembly of FeS clusters (19). The sequencing of heterotrophs that derive from methanogens—strictly anaerobic, the first haloarchaeal genome over a decade ago identified some hydrogen-dependent autotrophs. Haloarchaeal genomes are known eubacterial genes that possibly could have been acquired by lat- to have acquired, via lateral gene transfer (LGT), several genes eral gene transfer (11, 20), and whereas substantial data that from eubacteria, but it is yet unknown how many genes the Hal- would illuminate the origin of haloarchaeal physiology have ac- oarchaea acquired in total and, more importantly, whether inde- cumulated since then, those data have -
Theory of an Immune System Retrovirus
Proc. Nati. Acad. Sci. USA Vol. 83, pp. 9159-9163, December 1986 Medical Sciences Theory of an immune system retrovirus (human immunodeficiency virus/acquired immune deficiency syndrome) LEON N COOPER Physics Department and Center for Neural Science, Brown University, Providence, RI 02912 Contributed by Leon N Cooper, July 23, 1986 ABSTRACT Human immunodeficiency virus (HIV; for- initiates clonal expansion, sustained by interleukin 2 and y merly known as human T-cell lymphotropic virus type interferon. Ill/lymphadenopathy-associated virus, HTLV-Ill/LAV), the I first give a brief sketch of these events in a linked- retrovirus that infects T4-positive (helper) T cells of the interaction model in which it is assumed that antigen-specific immune system, has been implicated as the agent responsible T cells must interact with the B-cell-processed virus to for the acquired immune deficiency syndrome. In this paper, initiate clonal expansion (2). I then assume that virus-specific I contrast the growth of a "normal" virus with what I call an antibody is the major component ofimmune system response immune system retrovirus: a retrovirus that attacks the T4- that limits virus spread. As will be seen, the details of these positive T cells of the immune system. I show that remarkable assumptions do not affect the qualitative features of my interactions with other infections as well as strong virus conclusions. concentration dependence are general properties of immune Linked-Interaction Model for Clonal Expansion of Lympho- system retroviruses. Some of the consequences of these ideas cytes. Let X be the concentration of normal infecting virus are compared with observations. -
Maria Barthmes, Andre Bazzone, Ulrich Thomas, Andrea Brüggemann, Michael George, Niels Fertig, Alison Obergrussberger
Label-free analysis of Na+/Ca2+- exchanger (NCX) isolated from iPSC-derived cardiomyocytes Maria Barthmes, Andre Bazzone, Ulrich Thomas, Andrea Brüggemann, Michael George, Niels Fertig, Alison Obergrussberger Nanion Technologies GmbH, Ganghoferstr. 70A, 80339 Munich, Germany, contact: [email protected] Abstract Measuring NCX activity in human iPSC derived The Sodium-Calcium Exchangers (NCX) play an To drive the progress in pharmacological NCX cardiomyocytes important role in the cellular calcium research, new methods to measure NCX Human iPSC derived cardiomyocytes are being with high fluidic speed, the cells detached homeostasis under physiological and function are needed. At the current time, investigated as a model for cardiac safety again, but a sheet of the cell membrane pathological conditions. NCX has been of functional investigation of NCX range from assessment. To measure native NCX in these remains on the sensor. NCX currents can be interest as a pharmacological target for many patch-clamp, calcium flux assays, Langendorff- cardiomyocytes a cell based assay was evoked in these sheets. For a higher NCX signal years, in particular because clinical trials perfused hearts to studies in whole animals. We developed. Cardiomyocytes were detached female cardiomyocytes were used. This method involving inhibitors of the sodium-proton have developed an electrophysiological from the culture dish and added to the lipid enables the efficient investigation of the isolated exchanger, NHE, have delivered mixed results. method to investigate NCX function which is coated SSM sensor. Where the cell connected cardiac NCX current in a native membrane. Inhibition of the reversed mode of NCX is based on the solid supported membrane (SSM) with the lipid layer. -
Early-Stage Dynamics of Chloride Ion–Pumping Rhodopsin Revealed by a Femtosecond X-Ray Laser
Early-stage dynamics of chloride ion–pumping rhodopsin revealed by a femtosecond X-ray laser Ji-Hye Yuna,1, Xuanxuan Lib,c,1, Jianing Yued, Jae-Hyun Parka, Zeyu Jina, Chufeng Lie, Hao Hue, Yingchen Shib,c, Suraj Pandeyf, Sergio Carbajog, Sébastien Boutetg, Mark S. Hunterg, Mengning Liangg, Raymond G. Sierrag, Thomas J. Laneg, Liang Zhoud, Uwe Weierstalle, Nadia A. Zatsepine,h, Mio Ohkii, Jeremy R. H. Tamei, Sam-Yong Parki, John C. H. Spencee, Wenkai Zhangd, Marius Schmidtf,2, Weontae Leea,2, and Haiguang Liub,d,2 aDepartment of Biochemistry, College of Life Sciences and Biotechnology, Yonsei University, Seodaemun-gu, 120-749 Seoul, South Korea; bComplex Systems Division, Beijing Computational Science Research Center, Haidian, 100193 Beijing, People’s Republic of China; cDepartment of Engineering Physics, Tsinghua University, 100086 Beijing, People’s Republic of China; dDepartment of Physics, Beijing Normal University, Haidian, 100875 Beijing, People’s Republic of China; eDepartment of Physics, Arizona State University, Tempe, AZ 85287; fPhysics Department, University of Wisconsin, Milwaukee, Milwaukee, WI 53201; gLinac Coherent Light Source, Stanford Linear Accelerator Center National Accelerator Laboratory, Menlo Park, CA 94025; hDepartment of Chemistry and Physics, Australian Research Council Centre of Excellence in Advanced Molecular Imaging, La Trobe Institute for Molecular Science, La Trobe University, Melbourne, VIC 3086, Australia; and iDrug Design Laboratory, Graduate School of Medical Life Science, Yokohama City University, 230-0045 Yokohama, Japan Edited by Nicholas K. Sauter, Lawrence Berkeley National Laboratory, Berkeley, CA, and accepted by Editorial Board Member Axel T. Brunger February 21, 2021 (received for review September 30, 2020) Chloride ion–pumping rhodopsin (ClR) in some marine bacteria uti- an acceptor aspartate (13–15). -
Effect of Irradiation of the PEM of 1.531211SMJ29 Jeewanu with Clinical Mercury Lamp and Sunlight on the Morphological Features of the Silicon Molybdenum Jeewanu
International Journal of Engineering Research and General Science Volume 4, Issue 4, July-August, 2016 ISSN 2091-2730 Effect of Irradiation of the PEM of 1.531211SMJ29 Jeewanu with Clinical Mercury Lamp and Sunlight on the Morphological Features of the Silicon Molybdenum Jeewanu Deepa Srivastava Department of Chemistry, S.S.Khanna Girls‘ Degree College, Constituent College of Allahabad University, Allahabad, Uttar Pradesh, India E- Mail – [email protected] Abstract— Sterilized aqueous mixture of ammonium molybdate, diammonium hydrogen phosphate, mineral solution and formaldehyde on exposure to sunlight results in the formation of self-sustaining coacervates which were coined as Jeewanu, the autopoetic eukaryote by Bahadur and Ranganayaki. Jeewanu have been analyzed to contain a number of compounds of biological interest. The presence of various enzyme like activities viz., phosphatase, ATP-ase, esterase, nitrogenase have been also been detected in Jeewanu mixture. Gáinti (2003) discussed that Jeewanu possesses a promising configuration similar to protocell-like model. Keywords— Autopoetic, eukaryote, Jeewanu, PEM, sunlight, mercury lamp, morphology, 1.531211SMJ29 INTRODUCTION Sterilized aqueous mixture of ammonium molybdate, diammonium hydrogen phosphate, mineral solution and formaldehyde on exposure to sunlight results in the formation of self-sustaining coacervates which were coined as Jeewanu, the autopoetic eukaryote by Bahadur, K and Ranganayaki, S. in 1970. [1] The photochemical, formation of protocell-like microstructures ―Jeewanu‖ in a laboratory simulated prebiotic atmosphere capable of showing multiplication by budding, growth from within by actual synthesis of material and various metabolic activities has been reported by Bahadur et al. [1, 2, 3, 4, 5, 7, 8] Jeewanu have been analyzed to contain a number of compounds of biological interest viz. -
West Nile Virus (WNV) Fact Sheet
West Nile Virus (WNV) Fact Sheet What Is West Nile Virus? How Does West Nile Virus Spread? West Nile virus infection can cause serious disease. WNV is ▪ Infected Mosquitoes. established as a seasonal epidemic in North America that WNV is spread by the bite of an infected mosquito. flares up in the summer and continues into the fall. This Mosquitoes become infected when they feed on fact sheet contains important information that can help infected birds. Infected mosquitoes can then spread you recognize and prevent West Nile virus. WNV to humans and other animals when they bite. What Can I Do to Prevent WNV? ▪ Transfusions, Transplants, and Mother-to-Child. In a very small number of cases, WNV also has been The easiest and best way to avoid WNV is to prevent spread directly from an infected person through blood mosquito bites. transfusions, organ transplants, breastfeeding and ▪ When outdoors, use repellents containing DEET, during pregnancy from mother to baby. picaridin, IR3535, some oil of lemon eucalyptus or para- Not through touching. menthane-diol. Follow the directions on the package. ▪ WNV is not spread through casual contact such as ▪ Many mosquitoes are most active from dusk to dawn. touching or kissing a person with the virus. Be sure to use insect repellent and wear long sleeves and pants at these times or consider staying indoors How Soon Do Infected People Get Sick? during these hours. People typically develop symptoms between 3 and 14 days after they are bitten by the infected mosquito. ▪ Make sure you have good screens on your windows and doors to keep mosquitoes out.