Annual Report 2020–2021 the Great Unknown Ruby Burns Contents from Recollections
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Adaptive Radiations: from Field to Genomic Studies
Adaptive radiations: From field to genomic studies Scott A. Hodges and Nathan J. Derieg1 Department of Ecology, Evolution, and Marine Biology, University of California, Santa Barbara, CA 93106 Adaptive radiations were central to Darwin’s formation of his phenotype–environment correlation, (iii) trait utility, and (iv) theory of natural selection, and today they are still the centerpiece rapid speciation. Monophyly and rapid speciation for many of for many studies of adaptation and speciation. Here, we review the the classic examples of adaptive radiation have been established advantages of adaptive radiations, especially recent ones, for by using molecular techniques [e.g., cichlids (4), Galapagos detecting evolutionary trends and the genetic dissection of adap- finches (5, 6), and Hawaiian silverswords (7)]. Ecological and tive traits. We focus on Aquilegia as a primary example of these manipulative experiments are used to identify and test pheno- advantages and highlight progress in understanding the genetic type–environmental correlations and trait utility. Ultimately, basis of flower color. Phylogenetic analysis of Aquilegia indicates such studies have pointed to the link between divergent natural that flower color transitions proceed by changes in the types of selection and reproductive isolation and, thus, speciation (3). anthocyanin pigments produced or their complete loss. Biochem- Studies of adaptive radiations have exploded during the last 20 ical, crossing, and gene expression studies have provided a wealth years. In a search of the ISI Web of Science with ‘‘adaptive of information about the genetic basis of these transitions in radiation’’ (limited to the subject area of evolutionary biology) Aquilegia. To obtain both enzymatic and regulatory candidate we found 80 articles published in 2008 compared with only 1 in genes for the entire flavonoid pathway, which produces antho- 1990. -
Riverside State Park
Provisonal Report Rare Plant and Vegetation Survey of Riverside State Park Pacific Biodiversity Institute 2 Provisonal Report Rare Plant and Vegetation Survey of Riverside State Park Peter H. Morrison [email protected] George Wooten [email protected] Juliet Rhodes [email protected] Robin O’Quinn, Ph.D. [email protected] Hans M. Smith IV [email protected] January 2009 Pacific Biodiversity Institute P.O. Box 298 Winthrop, Washington 98862 509-996-2490 Recommended Citation Morrison, P.H., G. Wooten, J. Rhodes, R. O’Quinn and H.M. Smith IV, 2008. Provisional Report: Rare Plant and Vegetation Survey of Riverside State Park. Pacific Biodiversity Institute, Winthrop, Washington. 433 p. Acknowledgements Diana Hackenburg and Alexis Monetta assisted with entering and checking the data we collected into databases. The photographs in this report were taken by Peter Morrison, Robin O’Quinn, Geroge Wooten, and Diana Hackenburg. Project Funding This project was funded by the Washington State Parks and Recreation Commission. 3 Executive Summary Pacific Biodiversity Institute (PBI) conducted a rare plant and vegetation survey of Riverside State Park (RSP) for the Washington State Parks and Recreation Commission (WSPRC). RSP is located in Spokane County, Washington. A large portion of the park is located within the City of Spokane. RSP extends along both sides of the Spokane River and includes upland areas on the basalt plateau above the river terraces. The park also includes the lower portion of the Little Spokane River and adjacent uplands. The park contains numerous trails, campgrounds and other recreational facilities. The park receives a tremendous amount of recreational use from the nearby population. -
UC Berkeley UC Berkeley Electronic Theses and Dissertations
UC Berkeley UC Berkeley Electronic Theses and Dissertations Title Disturbance Macroecology: An Information Entropy Approach for Cross-System Comparisons of Ecosystems in Transition Permalink https://escholarship.org/uc/item/7rd5d4hv Author Newman, Erica A. Publication Date 2016 Peer reviewed|Thesis/dissertation eScholarship.org Powered by the California Digital Library University of California Disturbance Macroecology: An Information Entropy Approach for Cross-System Comparisons of Ecosystems in Transition by Erica Anna Newman A dissertation submitted in partial satisfaction of the requirements for the degree of Doctor of Philosophy in the Energy and Resources Group in the Graduate Division of the University of California, Berkeley Committee in charge: Professor John Harte, Co-Chair Professor Max Alan Moritz, Co-Chair Professor Steven R. Beissinger Professor Scott L. Stephens Spring 2016 Abstract Disturbance Macroecology: An Information Entropy Approach for Cross-System Comparisons of Ecosystems in Transition by Erica Anna Newman Doctor of Philosophy in Energy and Resources University of California, Berkeley Professor John Harte, Co-Chair Professor Max Alan Moritz, Co-Chair Little is known about how metrics of biodiversity and abundance scale in ecologically disturbed and disrupted systems. Natural disturbances have a fundamental role in structuring ecological communities, and the study of these processes and extension to novel ecological disruptions is of increasing importance due to global change and mounting human impacts. Numerous studies have demonstrated the importance of natural disturbance in determining basic ecological properties of an ecosystem, including species diversity, membership, and relative abundances of those species, as well as overall productivity. Although estimating ecological metrics at both the species and community level is of critical importance to conservation goals, predicting the impacts of disturbance and disruption, including anthropogenic changes, on ecosystems is a major problem for ecological theory for several reasons. -
Vascular Plant List Whatcom County Whatcom County. Whatcom County, WA
Vascular Plant List Whatcom County Whatcom County. Whatcom County, WA. List covers plants found in Whatcom County. Combination of plant lists of areas within Whatcom County, made by various observers over several years, with numerous additions by Jim Duemmel. Plants collected in Whatcom County found in the UW and WSU herbariums have been added to the list. 1175 spp., 223 introduced. Prepared by Don Knoke 2004. These lists represent the work of different WNPS members over the years. Their accuracy has not been verified by the Washington Native Plant Society. We offer these lists to individuals as a tool to enhance the enjoyment and study of native plants. * - Introduced Scientific Name Common Name Family Name Abies amabilis Pacific silver fir Pinaceae Abies grandis Grand fir Pinaceae Abies lasiocarpa Sub-alpine fir Pinaceae Abies procera Noble fir Pinaceae Acer circinatum Vine maple Aceraceae Acer glabrum Douglas maple Aceraceae Acer macrophyllum Big-leaf maple Aceraceae Achillea millefolium Yarrow Asteraceae Achlys triphylla Vanilla leaf Berberidaceae Aconitum columbianum Monkshood Ranunculaceae Actaea rubra Baneberry Ranunculaceae Adenocaulon bicolor Pathfinder Asteraceae Adiantum pedatum Maidenhair fern Polypodiaceae Agoseris aurantiaca Orange agoseris Asteraceae Agoseris glauca Mountain agoseris Asteraceae Agropyron caninum Bearded wheatgrass Poaceae Agropyron repens* Quack grass Poaceae Agropyron spicatum Blue-bunch wheatgrass Poaceae Agrostemma githago* Common corncockle Caryophyllaceae Agrostis alba* Red top Poaceae Agrostis exarata* -
Comparative Analysis of Inflorescence Architecture In
COMPARATIVE ANALYSIS OF INFLORESCENCE ARCHITECTURE IN AQUILEGIA SPECIES A Thesis Presented to the Faculty of California State Polytechnic University, Pomona In Partial Fulfilment Of the Requirements for the Degree Master of Science In Biological Sciences By Michael R. Speck 2021 SIGNATURE PAGE THESIS: COMPARATIVE ANALYSIS OF INFLORESCENCE ARCHITECTURE IN AQUILEGIA SPECIES AUTHOR: Michael R. Speck DATE SUBMITTED: Spring 2021 Department of Biological Sciences Dr. Bharti Sharma Thesis Committee Chair Professor of Biological Science __________________________________________ Dr. Valerie Mellano Professor of Plant Science __________________________________________ Dr. Paul Beardsley Professor of Biological Science __________________________________________ ii ABSTRACT The Aquilegia genus has undergone adaptive radiation over the last 1-5 million years. This has led to a wide array of diversity in flower size, plant height, and primary and secondary branching patterns of inflorescences. An inflorescence consists of flowers, branches, leaves, and bracts centered around the main stem. Some common inflorescence types in dicots and monocots include raceme, panicle, spike, thyrse, capitulum, and cymose. The Aquilegia genus is an example of a cymose inflorescence. Cymose patterns can be dichasial or monochasial and have primary, secondary, and tertiary branching. While a lot of recent effort has gone into the study of genes involved in the floral development (ABC model) in the Aquilegia, only a few studies have looked in detail into inflorescence development and intraspecific morphological differences in lateral organs such as bracts, and leaves. This study was aimed to track Aquilegia formosa and Aquilegia coerulea to understand heteroblasty in lateral organs and observe inflorescence development. I noticed conserved morphological patterns in simple bracts, trifoliate bracts, and leaves with/without a petiole at three to four main nodes on the stem in both species. -
Washington Flora Checklist a Checklist of the Vascular Plants of Washington State Hosted by the University of Washington Herbarium
Washington Flora Checklist A checklist of the Vascular Plants of Washington State Hosted by the University of Washington Herbarium The Washington Flora Checklist aims to be a complete list of the native and naturalized vascular plants of Washington State, with current classifications, nomenclature and synonymy. The checklist currently contains 3,929 terminal taxa (species, subspecies, and varieties). Taxa included in the checklist: * Native taxa whether extant, extirpated, or extinct. * Exotic taxa that are naturalized, escaped from cultivation, or persisting wild. * Waifs (e.g., ballast plants, escaped crop plants) and other scarcely collected exotics. * Interspecific hybrids that are frequent or self-maintaining. * Some unnamed taxa in the process of being described. Family classifications follow APG IV for angiosperms, PPG I (J. Syst. Evol. 54:563?603. 2016.) for pteridophytes, and Christenhusz et al. (Phytotaxa 19:55?70. 2011.) for gymnosperms, with a few exceptions. Nomenclature and synonymy at the rank of genus and below follows the 2nd Edition of the Flora of the Pacific Northwest except where superceded by new information. Accepted names are indicated with blue font; synonyms with black font. Native species and infraspecies are marked with boldface font. Please note: This is a working checklist, continuously updated. Use it at your discretion. Created from the Washington Flora Checklist Database on September 17th, 2018 at 9:47pm PST. Available online at http://biology.burke.washington.edu/waflora/checklist.php Comments and questions should be addressed to the checklist administrators: David Giblin ([email protected]) Peter Zika ([email protected]) Suggested citation: Weinmann, F., P.F. Zika, D.E. Giblin, B. -
Plant List by Scientific Names
Sheet1 Plant List from Antoine Peak (4/7/17, 5/13/17, and 7/8/17) Compiled by Derek Antonelli with the Calypso Chapter, Idaho Native Plant Society Scientific Name Common Name Symbol Family Duration Growth Habit Status Wetland Abies grandis grand fir ABGR Pinaceae perennial tree native Acer glabrum Rocky Mountain maple ACGL Aceraceae perennial tree/shrub native FAC Achillea millefolium common yarrow ACMI2 Asteraceae perennial forb/herb native FACU Adenocaulon bicolor American trailplant ADBI Asteraceae perennial forb/herb native Agrostis stolonifera creeping bentgrass AGST2 Poaceae perennial graminoid introduced FAC* Alnus incana ssp. tenuifolia thinleaf alder ALINT Betulaceae perennial tree/shrub native FACW Amelanchier alnifolia Saskatoon serviceberry AMAL2 Rosaceae perennial shrub native FACU Anaphalis margaritacea western pearly everlasting ANMA Asteraceae perennial forb/herb native Anemone piperi Piper's anemone ANPI Ranunculaceae perennial forb/herb native FACU Antennaria howellii Howell's pussytoes ANHO Asteraceae perennial forb/herb native Antennaria racemosa raceme pussytoes ANRA Asteraceae perennial forb/herb native Apocynum androsaemifolium spreading dogbane APAN2 Apocynaceae perennial forb/herb native (cont.) androsaemifolium Arabidopsis thaliana mouseear cress ARTH Brassicaceae annual forb/herb introduced Arnica cordifolia heartleaf arnica ARCO9 Asteraceae perennial forb/herb native Arceuthobium americanum American dwarf mistletoe ARAM Viscaceae perennial subshrub native Arrhenatherum elatius tall oatgrass AREL3 Poaceae perennial -
Waterton Lakes National Park • Common Name(Order Family Genus Species)
Waterton Lakes National Park Flora • Common Name(Order Family Genus species) Monocotyledons • Arrow-grass, Marsh (Najadales Juncaginaceae Triglochin palustris) • Arrow-grass, Seaside (Najadales Juncaginaceae Triglochin maritima) • Arrowhead, Northern (Alismatales Alismataceae Sagittaria cuneata) • Asphodel, Sticky False (Liliales Liliaceae Triantha glutinosa) • Barley, Foxtail (Poales Poaceae/Gramineae Hordeum jubatum) • Bear-grass (Liliales Liliaceae Xerophyllum tenax) • Bentgrass, Alpine (Poales Poaceae/Gramineae Podagrostis humilis) • Bentgrass, Creeping (Poales Poaceae/Gramineae Agrostis stolonifera) • Bentgrass, Green (Poales Poaceae/Gramineae Calamagrostis stricta) • Bentgrass, Spike (Poales Poaceae/Gramineae Agrostis exarata) • Bluegrass, Alpine (Poales Poaceae/Gramineae Poa alpina) • Bluegrass, Annual (Poales Poaceae/Gramineae Poa annua) • Bluegrass, Arctic (Poales Poaceae/Gramineae Poa arctica) • Bluegrass, Plains (Poales Poaceae/Gramineae Poa arida) • Bluegrass, Bulbous (Poales Poaceae/Gramineae Poa bulbosa) • Bluegrass, Canada (Poales Poaceae/Gramineae Poa compressa) • Bluegrass, Cusick's (Poales Poaceae/Gramineae Poa cusickii) • Bluegrass, Fendler's (Poales Poaceae/Gramineae Poa fendleriana) • Bluegrass, Glaucous (Poales Poaceae/Gramineae Poa glauca) • Bluegrass, Inland (Poales Poaceae/Gramineae Poa interior) • Bluegrass, Fowl (Poales Poaceae/Gramineae Poa palustris) • Bluegrass, Patterson's (Poales Poaceae/Gramineae Poa pattersonii) • Bluegrass, Kentucky (Poales Poaceae/Gramineae Poa pratensis) • Bluegrass, Sandberg's (Poales -
Cypripedium Montanum Douglas Ex Lindley (Mountain Lady's Slipper): a Technical Conservation Assessment
Cypripedium montanum Douglas ex Lindley (mountain lady’s slipper): A Technical Conservation Assessment Prepared for the USDA Forest Service, Rocky Mountain Region, Species Conservation Project February 21, 2007 Nan C. Vance, Ph.D. Pacific Northwest Research Station 3200 SW Jefferson Way Corvallis, OR 97331 Peer Review Administered by Center for Plant Conservation Vance, N.C. (2007, February 21). Cypripedium montanum Douglas ex Lindley (mountain lady’s slipper): a technical conservation assessment. [Online]. USDA Forest Service, Rocky Mountain Region. Available: http://www.fs.fed.us/r2/projects/scp/assessments/cypripediummontanum.pdf [date of access]. ACKNOWLEDGMENTS This project was funded in part by USDA Forest Service, Rocky Mountain Region, and Pacific Northwest Research Station, and by Kelsey Creek Laboratories, Issaquah, WA. Many thanks to Greg Karow, Forester, Bighorn National Forest who provided the essential and necessary site and population data for this assessment and Tucker Galloway whose dedicated field work provided important new information. Another important source of information is the Wyoming Natural Diversity Database, and I appreciate the excellent cooperation of Bonnie Heidel, Botanist, and Tessa Ducher, Database Specialist. I would also like to express my gratitude to Cathy Seibert, collections manager at the Montana State Herbarium, Peter Bernhardt, Professor of Botany at Saint Louis University, Dan Luoma and Joyce Eberhart, mycologists at Oregon State University, Roger and Jane Smith of Kelsey Creek Laboratories, and Julie Knorr, Botanist on the Klamath National Forest, for their help and information. I am grateful to David Anderson for his advice and for generously allowing me to use an assessment he authored as a model and guide. -
A Second Annotated Checklist of Vascular Plants in Wells Gray Provincial Park and Vicinity, British Columbia, Canada
A second annotated checklist of vascular plants in Wells Gray Provincial Park and vicinity, British Columbia, Canada Version 1: April, 2011 Curtis R. Björk1 and Trevor Goward2 ENLICHENED CONSULTING LTD. Box 131, Clearwater, BC, V0E 1N0, Canada [email protected], [email protected] Vascular Plants in Wells Gray SUMMARY Wells Gray Provincial Park is a vast wilderness preserve situated in the mountains and highlands of south-central British Columbia. The first major floristic study of the vascular plants of Wells Gray and its vicinity was published in 1965 by Leena Hämet-Ahti, who documented 550 taxa, including a first Canadian record of Carex praeceptorium. The present study contributes nearly 500 additional taxa documented by us between 1976 and 2010 in connection with our personal explorations of the Clearwater Valley. The vascular flora of Wells Gray Park and vicinity now stands at 1046 taxa, including 881 native species and 165 species introduced from Eurasia and other portions of British Columbia. Wells Gray Park is notable both for the presence of numerous taxa (45) at or near the northern limits of their range, as well as for an unexpectedly high number of taxa (43) accorded conservation status by the British Columbia Conservation Data Centre. Antennaria corymbosa has its only known Canadian locality within Wells Gray, while five additional species reported here are known in Canada from fewer than six localities. About a dozen unknown, possibly undescribed taxa have also been detected. Botanical inventory has thus far been confined to the southern portions of Wells Gray. Future studies in northern half of the park will certainly greatly increase our knowledge of the biological diversity safeguarded in this magnificent wilderness preserve. -
Vascular Plants Species Checklist
National Park Service U.S. Department of the Interior Crater Lake National Park (CRLA) Species Checklist This species list is a work in progress. It represents information currently in the NPSpecies data system and records are continually being added or updated by National Park Service staff. To report an error or make a suggestion, go to https://irma.nps.gov/npspecies/suggest. Scientific Name Common Name Vascular Plants Alismatales/Araceae [ ] Lemna minor duckweed [ ] * Lysichiton americanus skunk cabbage Alismatales/Potamogetonaceae [ ] Potamogeton pusillus var. tenuissimus Berchtold's pondweed Alismatales/Tofieldiaceae [ ] Tofieldia glutinosa Tofieldia [ ] * Tofieldia occidentalis Apiales/Apiaceae [ ] Angelica genuflexa bentleaf or kneeling angelica [ ] Heracleum lanatum Cow Parsnip [ ] Ligusticum grayi Gray's Licoriceroot, Gray's lovage, Lovage [ ] Lomatium martindalei coast range lomatium, few-fruited lomatium, Martindale's lomatium [ ] Lomatium nudicaule barestem lomatium, pestle parsnip [ ] Lomatium triternatum nineleaf biscuitroot [ ] Osmorhiza berteroi Mountain Sweet Cicely [ ] Osmorhiza depauperata blunt- fruited sweet cicely [ ] Osmorhiza purpurea purple sweet cicely, Sweet Cicely [ ] Oxypolis occidentalis Western Oxypolis, western sweet cicely [ ] Sanicula graveolens northern sanicle, Sierra sanicle [ ] Sphenosciadium capitellatum Swamp Whiteheads, swamp white-heads, woolly-head parsnip Apiales/Araliaceae [ ] Oplopanax horridus Devil's Club Asparagales/Amaryllidaceae [ ] Allium amplectens slim-leaf onion [ ] * Allium geyeri -
Disturbance Macroecology: an Information Entropy Approach For
Disturbance Macroecology: An Information Entropy Approach for Cross-System Comparisons of Ecosystems in Transition by Erica Anna Newman A dissertation submitted in partial satisfaction of the requirements for the degree of Doctor of Philosophy in the Energy and Resources Group in the Graduate Division of the University of California, Berkeley Committee in charge: Professor John Harte, Co-Chair Professor Max Alan Moritz, Co-Chair Professor Steven R. Beissinger Professor Scott L. Stephens Spring 2016 Abstract Disturbance Macroecology: An Information Entropy Approach for Cross-System Comparisons of Ecosystems in Transition by Erica Anna Newman Doctor of Philosophy in Energy and Resources University of California, Berkeley Professor John Harte, Co-Chair Professor Max Alan Moritz, Co-Chair Little is known about how metrics of biodiversity and abundance scale in ecologically disturbed and disrupted systems. Natural disturbances have a fundamental role in structuring ecological communities, and the study of these processes and extension to novel ecological disruptions is of increasing importance due to global change and mounting human impacts. Numerous studies have demonstrated the importance of natural disturbance in determining basic ecological properties of an ecosystem, including species diversity, membership, and relative abundances of those species, as well as overall productivity. Although estimating ecological metrics at both the species and community level is of critical importance to conservation goals, predicting the impacts of disturbance and disruption, including anthropogenic changes, on ecosystems is a major problem for ecological theory for several reasons. Disturbances are diverse in type, create patches that are internally heterogeneous, interact with site-specific disturbance legacies, and have different effects over multiple spatial and temporal scales.