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Opuscula Philolichenum, 6: 1-XXXX
Opuscula Philolichenum, 15: 56-81. 2016. *pdf effectively published online 25July2016 via (http://sweetgum.nybg.org/philolichenum/) Lichens, lichenicolous fungi, and allied fungi of Pipestone National Monument, Minnesota, U.S.A., revisited M.K. ADVAITA, CALEB A. MORSE1,2 AND DOUGLAS LADD3 ABSTRACT. – A total of 154 lichens, four lichenicolous fungi, and one allied fungus were collected by the authors from 2004 to 2015 from Pipestone National Monument (PNM), in Pipestone County, on the Prairie Coteau of southwestern Minnesota. Twelve additional species collected by previous researchers, but not found by the authors, bring the total number of taxa known for PNM to 171. This represents a substantial increase over previous reports for PNM, likely due to increased intensity of field work, and also to the marked expansion of corticolous and anthropogenic substrates since the site was first surveyed in 1899. Reexamination of 116 vouchers deposited in MIN and the PNM herbarium led to the exclusion of 48 species previously reported from the site. Crustose lichens are the most common growth form, comprising 65% of the lichen diversity. Sioux Quartzite provided substrate for 43% of the lichen taxa collected. Saxicolous lichen communities were characterized by sampling four transects on cliff faces and low outcrops. An annotated checklist of the lichens of the site is provided, as well as a list of excluded taxa. We report 24 species (including 22 lichens and two lichenicolous fungi) new for Minnesota: Acarospora boulderensis, A. contigua, A. erythrophora, A. strigata, Agonimia opuntiella, Arthonia clemens, A. muscigena, Aspicilia americana, Bacidina delicata, Buellia tyrolensis, Caloplaca flavocitrina, C. lobulata, C. -
Whole Genome Shotgun Sequencing Detects Greater Lichen Fungal Diversity Than Amplicon-Based Methods in Environmental Samples
ORIGINAL RESEARCH published: 13 December 2019 doi: 10.3389/fevo.2019.00484 Whole Genome Shotgun Sequencing Detects Greater Lichen Fungal Diversity Than Amplicon-Based Methods in Environmental Samples Kyle Garrett Keepers 1*, Cloe S. Pogoda 1, Kristin H. White 1, Carly R. Anderson Stewart 1, Jordan R. Hoffman 2, Ana Maria Ruiz 2, Christy M. McCain 1, James C. Lendemer 2, Nolan Coburn Kane 1 and Erin A. Tripp 1,3 1 Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, CO, United States, 2 Institute of Edited by: Systematic Botany, The New York Botanical Garden, New York, NY, United States, 3 Museum of Natural History, University of Maik Veste, Colorado, Boulder, CO, United States Brandenburg University of Technology Cottbus-Senftenberg, Germany Reviewed by: In this study we demonstrate the utility of whole genome shotgun (WGS) metagenomics Martin Grube, in study organisms with small genomes to improve upon amplicon-based estimates University of Graz, Austria of biodiversity and microbial diversity in environmental samples for the purpose of Robert Friedman, University of South Carolina, understanding ecological and evolutionary processes. We generated a database of United States full-length and near-full-length ribosomal DNA sequence complexes from 273 lichenized *Correspondence: fungal species and used this database to facilitate fungal species identification in Kyle Garrett Keepers [email protected] the southern Appalachian Mountains using low coverage WGS at higher resolution and without the biases of amplicon-based approaches. Using this new database and Specialty section: methods herein developed, we detected between 2.8 and 11 times as many species This article was submitted to Phylogenetics, Phylogenomics, and from lichen fungal propagules by aligning reads from WGS-sequenced environmental Systematics, samples compared to a traditional amplicon-based approach. -
Old Woman Creek National Estuarine Research Reserve Management Plan 2011-2016
Old Woman Creek National Estuarine Research Reserve Management Plan 2011-2016 April 1981 Revised, May 1982 2nd revision, April 1983 3rd revision, December 1999 4th revision, May 2011 Prepared for U.S. Department of Commerce Ohio Department of Natural Resources National Oceanic and Atmospheric Administration Division of Wildlife Office of Ocean and Coastal Resource Management 2045 Morse Road, Bldg. G Estuarine Reserves Division Columbus, Ohio 1305 East West Highway 43229-6693 Silver Spring, MD 20910 This management plan has been developed in accordance with NOAA regulations, including all provisions for public involvement. It is consistent with the congressional intent of Section 315 of the Coastal Zone Management Act of 1972, as amended, and the provisions of the Ohio Coastal Management Program. OWC NERR Management Plan, 2011 - 2016 Acknowledgements This management plan was prepared by the staff and Advisory Council of the Old Woman Creek National Estuarine Research Reserve (OWC NERR), in collaboration with the Ohio Department of Natural Resources-Division of Wildlife. Participants in the planning process included: Manager, Frank Lopez; Research Coordinator, Dr. David Klarer; Coastal Training Program Coordinator, Heather Elmer; Education Coordinator, Ann Keefe; Education Specialist Phoebe Van Zoest; and Office Assistant, Gloria Pasterak. Other Reserve staff including Dick Boyer and Marje Bernhardt contributed their expertise to numerous planning meetings. The Reserve is grateful for the input and recommendations provided by members of the Old Woman Creek NERR Advisory Council. The Reserve is appreciative of the review, guidance, and council of Division of Wildlife Executive Administrator Dave Scott and the mapping expertise of Keith Lott and the late Steve Barry. -
H. Thorsten Lumbsch VP, Science & Education the Field Museum 1400
H. Thorsten Lumbsch VP, Science & Education The Field Museum 1400 S. Lake Shore Drive Chicago, Illinois 60605 USA Tel: 1-312-665-7881 E-mail: [email protected] Research interests Evolution and Systematics of Fungi Biogeography and Diversification Rates of Fungi Species delimitation Diversity of lichen-forming fungi Professional Experience Since 2017 Vice President, Science & Education, The Field Museum, Chicago. USA 2014-2017 Director, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. Since 2014 Curator, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. 2013-2014 Associate Director, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. 2009-2013 Chair, Dept. of Botany, The Field Museum, Chicago, USA. Since 2011 MacArthur Associate Curator, Dept. of Botany, The Field Museum, Chicago, USA. 2006-2014 Associate Curator, Dept. of Botany, The Field Museum, Chicago, USA. 2005-2009 Head of Cryptogams, Dept. of Botany, The Field Museum, Chicago, USA. Since 2004 Member, Committee on Evolutionary Biology, University of Chicago. Courses: BIOS 430 Evolution (UIC), BIOS 23410 Complex Interactions: Coevolution, Parasites, Mutualists, and Cheaters (U of C) Reading group: Phylogenetic methods. 2003-2006 Assistant Curator, Dept. of Botany, The Field Museum, Chicago, USA. 1998-2003 Privatdozent (Assistant Professor), Botanical Institute, University – GHS - Essen. Lectures: General Botany, Evolution of lower plants, Photosynthesis, Courses: Cryptogams, Biology -
BLS Bulletin 111 Winter 2012.Pdf
1 BRITISH LICHEN SOCIETY OFFICERS AND CONTACTS 2012 PRESIDENT B.P. Hilton, Beauregard, 5 Alscott Gardens, Alverdiscott, Barnstaple, Devon EX31 3QJ; e-mail [email protected] VICE-PRESIDENT J. Simkin, 41 North Road, Ponteland, Newcastle upon Tyne NE20 9UN, email [email protected] SECRETARY C. Ellis, Royal Botanic Garden, 20A Inverleith Row, Edinburgh EH3 5LR; email [email protected] TREASURER J.F. Skinner, 28 Parkanaur Avenue, Southend-on-Sea, Essex SS1 3HY, email [email protected] ASSISTANT TREASURER AND MEMBERSHIP SECRETARY H. Döring, Mycology Section, Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3AB, email [email protected] REGIONAL TREASURER (Americas) J.W. Hinds, 254 Forest Avenue, Orono, Maine 04473-3202, USA; email [email protected]. CHAIR OF THE DATA COMMITTEE D.J. Hill, Yew Tree Cottage, Yew Tree Lane, Compton Martin, Bristol BS40 6JS, email [email protected] MAPPING RECORDER AND ARCHIVIST M.R.D. Seaward, Department of Archaeological, Geographical & Environmental Sciences, University of Bradford, West Yorkshire BD7 1DP, email [email protected] DATA MANAGER J. Simkin, 41 North Road, Ponteland, Newcastle upon Tyne NE20 9UN, email [email protected] SENIOR EDITOR (LICHENOLOGIST) P.D. Crittenden, School of Life Science, The University, Nottingham NG7 2RD, email [email protected] BULLETIN EDITOR P.F. Cannon, CABI and Royal Botanic Gardens Kew; postal address Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3AB, email [email protected] CHAIR OF CONSERVATION COMMITTEE & CONSERVATION OFFICER B.W. Edwards, DERC, Library Headquarters, Colliton Park, Dorchester, Dorset DT1 1XJ, email [email protected] CHAIR OF THE EDUCATION AND PROMOTION COMMITTEE: S. -
One Hundred New Species of Lichenized Fungi: a Signature of Undiscovered Global Diversity
Phytotaxa 18: 1–127 (2011) ISSN 1179-3155 (print edition) www.mapress.com/phytotaxa/ Monograph PHYTOTAXA Copyright © 2011 Magnolia Press ISSN 1179-3163 (online edition) PHYTOTAXA 18 One hundred new species of lichenized fungi: a signature of undiscovered global diversity H. THORSTEN LUMBSCH1*, TEUVO AHTI2, SUSANNE ALTERMANN3, GUILLERMO AMO DE PAZ4, ANDRÉ APTROOT5, ULF ARUP6, ALEJANDRINA BÁRCENAS PEÑA7, PAULINA A. BAWINGAN8, MICHEL N. BENATTI9, LUISA BETANCOURT10, CURTIS R. BJÖRK11, KANSRI BOONPRAGOB12, MAARTEN BRAND13, FRANK BUNGARTZ14, MARCELA E. S. CÁCERES15, MEHTMET CANDAN16, JOSÉ LUIS CHAVES17, PHILIPPE CLERC18, RALPH COMMON19, BRIAN J. COPPINS20, ANA CRESPO4, MANUELA DAL-FORNO21, PRADEEP K. DIVAKAR4, MELIZAR V. DUYA22, JOHN A. ELIX23, ARVE ELVEBAKK24, JOHNATHON D. FANKHAUSER25, EDIT FARKAS26, LIDIA ITATÍ FERRARO27, EBERHARD FISCHER28, DAVID J. GALLOWAY29, ESTER GAYA30, MIREIA GIRALT31, TREVOR GOWARD32, MARTIN GRUBE33, JOSEF HAFELLNER33, JESÚS E. HERNÁNDEZ M.34, MARÍA DE LOS ANGELES HERRERA CAMPOS7, KLAUS KALB35, INGVAR KÄRNEFELT6, GINTARAS KANTVILAS36, DOROTHEE KILLMANN28, PAUL KIRIKA37, KERRY KNUDSEN38, HARALD KOMPOSCH39, SERGEY KONDRATYUK40, JAMES D. LAWREY21, ARMIN MANGOLD41, MARCELO P. MARCELLI9, BRUCE MCCUNE42, MARIA INES MESSUTI43, ANDREA MICHLIG27, RICARDO MIRANDA GONZÁLEZ7, BIBIANA MONCADA10, ALIFERETI NAIKATINI44, MATTHEW P. NELSEN1, 45, DAG O. ØVSTEDAL46, ZDENEK PALICE47, KHWANRUAN PAPONG48, SITTIPORN PARNMEN12, SERGIO PÉREZ-ORTEGA4, CHRISTIAN PRINTZEN49, VÍCTOR J. RICO4, EIMY RIVAS PLATA1, 50, JAVIER ROBAYO51, DANIA ROSABAL52, ULRIKE RUPRECHT53, NORIS SALAZAR ALLEN54, LEOPOLDO SANCHO4, LUCIANA SANTOS DE JESUS15, TAMIRES SANTOS VIEIRA15, MATTHIAS SCHULTZ55, MARK R. D. SEAWARD56, EMMANUËL SÉRUSIAUX57, IMKE SCHMITT58, HARRIE J. M. SIPMAN59, MOHAMMAD SOHRABI 2, 60, ULRIK SØCHTING61, MAJBRIT ZEUTHEN SØGAARD61, LAURENS B. SPARRIUS62, ADRIANO SPIELMANN63, TOBY SPRIBILLE33, JUTARAT SUTJARITTURAKAN64, ACHRA THAMMATHAWORN65, ARNE THELL6, GÖRAN THOR66, HOLGER THÜS67, EINAR TIMDAL68, CAMILLE TRUONG18, ROMAN TÜRK69, LOENGRIN UMAÑA TENORIO17, DALIP K. -
Lichens and Allied Fungi of the Indiana Forest Alliance
2017. Proceedings of the Indiana Academy of Science 126(2):129–152 LICHENS AND ALLIED FUNGI OF THE INDIANA FOREST ALLIANCE ECOBLITZ AREA, BROWN AND MONROE COUNTIES, INDIANA INCORPORATED INTO A REVISED CHECKLIST FOR THE STATE OF INDIANA James C. Lendemer: Institute of Systematic Botany, The New York Botanical Garden, Bronx, NY 10458-5126 USA ABSTRACT. Based upon voucher collections, 108 lichen species are reported from the Indiana Forest Alliance Ecoblitz area, a 900 acre unit in Morgan-Monroe and Yellowwood State Forests, Brown and Monroe Counties, Indiana. The lichen biota of the study area was characterized as: i) dominated by species with green coccoid photobionts (80% of taxa); ii) comprised of 49% species that reproduce primarily with lichenized diaspores vs. 44% that reproduce primarily through sexual ascospores; iii) comprised of 65% crustose taxa, 29% foliose taxa, and 6% fruticose taxa; iv) one wherein many species are rare (e.g., 55% of species were collected fewer than three times) and fruticose lichens other than Cladonia were entirely absent; and v) one wherein cyanolichens were poorly represented, comprising only three species. Taxonomic diversity ranged from 21 to 56 species per site, with the lowest diversity sites concentrated in riparian corridors and the highest diversity sites on ridges. Low Gap Nature Preserve, located within the study area, was found to have comparable species richness to areas outside the nature preserve, although many species rare in the study area were found only outside preserve boundaries. Sets of rare species are delimited and discussed, as are observations as to the overall low abundance of lichens on corticolous substrates and the presence of many unhealthy foliose lichens on mature tree boles. -
Adiciones a La Biota De Líquenes De La Isla Del Coco, Puntarenas, Costa Rica
Adiciones a la biota de líquenes de la Isla del Coco, Puntarenas, Costa Rica Loengrin Alfonso Umaña-Tenorio1 1. Departamento de Historia Natural, Museo Nacional de Costa Rica, Apdo. 749-1000, San José, Costa Rica; [email protected] Recibido 30-I-2019. Corregido 26-IV-2019. Aceptado 20-VI-2019. ABSTRACT. Additions to the lichen biota of Isla del Coco, Puntarenas, Costa Rica. Introduction: The flo- ristic composition of Isla del Coco is relatively well known. While studies have been typically oriented to flow- ering plants, other organisms such as lichens remain understudied. Objective: The purpose of this inventory is to expand the documentation of lichen species found in Isla del Coco, by reviewing literature and herbarium col- lections, as well as new collections, to facilitate the understanding of the diversity of said organisms. Methods: A list of the collections deposited in several herbaria was prepared, complemented with the bibliographical references of previous works. In addition, a field trip to collect and photograph specimens was performed in November 2017. The names of the species were adapted according to the online database Index Fungorum. Results: A total of 284 specimens were studied, corresponding to 173 different taxa, including 40 new records. Twenty-five taxa were identified at the genus level and 148 at the species level. The specimens were distributed in 23 families and 66 genera. The best-represented families are Graphidaceae (37 spp.), Pilocarpaceae (34 spp.) and Collemataceae (8 spp.). Porina (17 spp.) and Strigula (14 spp.) were the most diverse genera. The major- ity (52%) of the 148 species have a pantropical distribution, 34% are Neotropical and 13% are cosmopolitan. -
Lichens and Lichenicolous Fungi of Yosemite National Park, California
North American Fungi Volume 8, Number 11, Pages 1-47 Published September 9, 2013 Lichens and Lichenicolous Fungi of Yosemite National Park, California M. Hutten1, U. Arup2, O. Breuss3, T. L. Esslinger4, A. M. Fryday5, K. Knudsen6, J. C. Lendemer7, C. Printzen8, H. T. Root9, M. Schultz10, J. Sheard11, T. Tønsberg12, and B. McCune9 1Lassen Volcanic National Park, P.O. Box 100, Mineral, CA 96063 USA. 2Botanical Museum, Lund University, Box 117, 221 00 Lund, Sweden 3Naturhistorisches Museum Wien, Botanische Abteilung, Burgring 7, A-1010 Wien, Austria 4Dept. of Biological Sciences #2715, P.O. Box 6050, North Dakota State University, Fargo ND 58108, U.S.A. 5Dept. of Plant Biology, Michigan State University, East Lansing, MI 48824, U.S.A. 6Dept. of Botany & Plant Sciences, University of California, Riverside, CA 92521, U.S.A. 7New York Botanical Garden, Bronx, NY 10458-5126, U.S.A. 8Abt. Botanik & Molek. Evol., Forschungsinstitut Senckenberg, Senckenberganlage 25, D-60325 Frankfurt am Main, Germany 9Dept. Botany and Plant Pathology, Oregon State University, Corvallis OR 97331, U.S.A. 10Biocenter Klein Flottbek, University of Hamburg, Ohnhorststr. 18, D-22609 Hamburg, Germany 11Dept. of Biology, University of Saskatchewan, 112 Science Place, Saskatoon, SK S7N 5E2, Canada 12Museum of Natural History, University of Bergen, Allégaten 41, N-5007 Bergen, Norway Hutten, M., U. Arup, O. Breuss, T. L. Esslinger, A. M. Fryday, K. Knudsen, J. C. Lendemer, C. Printzen, H. T. Root, M. Schultz, J. Sheard, T. Tønsberg, and B. McCune. 2013. Lichens and Lichenicolous Fungi of Yosemite National Park, California. North American Fungi 8(11): 1-47. -
Species in Mexican Xerophytic Scrub Vegetation, Evidenced by Molecular, Morphological and Chemistry Data
Anales del Jardín Botánico de Madrid 78 (1): e107 https://doi.org/10.3989/ajbm.2564 ISSN-L: 0211-1322 Diversity of Xanthoparmelia (Parmeliaceae) species in Mexican xerophytic scrub vegetation, evidenced by molecular, morphological and chemistry data Alejandrina BARCENAS-PEÑA1,*, Steven D. LEAVITT2, Felix GREWE3, H. Thorsten LUMBSCH4 1,3,4The Grainger Bioinformatics Center & Negaunee Integrative Research Center, Science & Education, The Field Museum, 1400 South Lake Shore Drive, Chicago, IL 60605-2496, USA. 2Department of Biology and M.L. Bean Life Science Museum, Brigham Young University, 4102 Life Science Building, Provo, UT 84602, USA. *Correspondence: [email protected] 1https://orcid.org/0000-0003-1674-1164, 2https://orcid.org/0000-0002-5034-9724 3https://orcid.org/0000-0002-2805-5930, 4https://orcid.org/0000-0003-1512-835X Abstract. The genus Xanthoparmelia is the largest genus of lichen- Resumen. Xanthoparmelia es el género más grande de hongos liqueniza- forming fungi with about 800 species worldwide. Xanthoparmelia is dos, con alrededor de 800 especies en todo el mundo. Xanthoparmelia es also common in the deserts of central Mexico, but only a few molecular común en los desiertos del centro de México, pero existen pocos estudios studies exist on its species’ diversity in this region. In this study, we moleculares sobre la diversidad de especies en esta región. En este estu- sampled 38 Xanthoparmelia species from around the world including dio, muestreamos 38 especies de Xanthoparmelia de diferentes partes del species from the xerophytic scrubs of central Mexico to assess the di- mundo, incluidas especies de los matorrales xerófilos del centro de Méxi- versity using an integrative approach. -
Piedmont Lichen Inventory
PIEDMONT LICHEN INVENTORY: BUILDING A LICHEN BIODIVERSITY BASELINE FOR THE PIEDMONT ECOREGION OF NORTH CAROLINA, USA By Gary B. Perlmutter B.S. Zoology, Humboldt State University, Arcata, CA 1991 A Thesis Submitted to the Staff of The North Carolina Botanical Garden University of North Carolina at Chapel Hill Advisor: Dr. Johnny Randall As Partial Fulfilment of the Requirements For the Certificate in Native Plant Studies 15 May 2009 Perlmutter – Piedmont Lichen Inventory Page 2 This Final Project, whose results are reported herein with sections also published in the scientific literature, is dedicated to Daniel G. Perlmutter, who urged that I return to academia. And to Theresa, Nichole and Dakota, for putting up with my passion in lichenology, which brought them from southern California to the Traingle of North Carolina. TABLE OF CONTENTS Introduction……………………………………………………………………………………….4 Chapter I: The North Carolina Lichen Checklist…………………………………………………7 Chapter II: Herbarium Surveys and Initiation of a New Lichen Collection in the University of North Carolina Herbarium (NCU)………………………………………………………..9 Chapter III: Preparatory Field Surveys I: Battle Park and Rock Cliff Farm……………………13 Chapter IV: Preparatory Field Surveys II: State Park Forays…………………………………..17 Chapter V: Lichen Biota of Mason Farm Biological Reserve………………………………….19 Chapter VI: Additional Piedmont Lichen Surveys: Uwharrie Mountains…………………...…22 Chapter VII: A Revised Lichen Inventory of North Carolina Piedmont …..…………………...23 Acknowledgements……………………………………………………………………………..72 Appendices………………………………………………………………………………….…..73 Perlmutter – Piedmont Lichen Inventory Page 4 INTRODUCTION Lichens are composite organisms, consisting of a fungus (the mycobiont) and a photosynthesising alga and/or cyanobacterium (the photobiont), which together make a life form that is distinct from either partner in isolation (Brodo et al. -
Distribution of Chemistry and Sexual Fecundity in the Lichenized-Fungi, Xanthoparmelia Cumberlandia and Xanthoparmelia Coloradoe
Brigham Young University BYU ScholarsArchive Theses and Dissertations 2004-12-01 Distribution of chemistry and sexual fecundity in the lichenized- fungi, Xanthoparmelia cumberlandia and Xanthoparmelia coloradoensis on Boulder Mountain, Aquarius Plateau, UT Heather Bird Jackson Brigham Young University - Provo Follow this and additional works at: https://scholarsarchive.byu.edu/etd Part of the Biology Commons BYU ScholarsArchive Citation Jackson, Heather Bird, "Distribution of chemistry and sexual fecundity in the lichenized-fungi, Xanthoparmelia cumberlandia and Xanthoparmelia coloradoensis on Boulder Mountain, Aquarius Plateau, UT" (2004). Theses and Dissertations. 206. https://scholarsarchive.byu.edu/etd/206 This Thesis is brought to you for free and open access by BYU ScholarsArchive. It has been accepted for inclusion in Theses and Dissertations by an authorized administrator of BYU ScholarsArchive. For more information, please contact [email protected], [email protected]. DISTRIBUTION OF CHEMISTRY AND SEXUAL FECUNDITY IN THE LICHENIZED-FUNGI, XANTHOPARMELIA CUMBERLANDIA AND XANTHOPARMELIA COLORADOËNSIS, ON BOULDER MOUNTAIN, AQUARIUS PLATEAU, UT by Heather Bird Jackson A thesis submitted to the faculty of Brigham Young University in partial fulfillment of the requirements for the degree of Master of Science Department of Integrative Biology Brigham Young University December 2004 BRIGHAM YOUNG UNIVERSITY GRADUATE COMMITTEE APPROVAL of dissertation submitted by Heather Bird Jackson This dissertation has been read by each