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The Lichens' Microbiota, Still a Mystery?
fmicb-12-623839 March 24, 2021 Time: 15:25 # 1 REVIEW published: 30 March 2021 doi: 10.3389/fmicb.2021.623839 The Lichens’ Microbiota, Still a Mystery? Maria Grimm1*, Martin Grube2, Ulf Schiefelbein3, Daniela Zühlke1, Jörg Bernhardt1 and Katharina Riedel1 1 Institute of Microbiology, University Greifswald, Greifswald, Germany, 2 Institute of Plant Sciences, Karl-Franzens-University Graz, Graz, Austria, 3 Botanical Garden, University of Rostock, Rostock, Germany Lichens represent self-supporting symbioses, which occur in a wide range of terrestrial habitats and which contribute significantly to mineral cycling and energy flow at a global scale. Lichens usually grow much slower than higher plants. Nevertheless, lichens can contribute substantially to biomass production. This review focuses on the lichen symbiosis in general and especially on the model species Lobaria pulmonaria L. Hoffm., which is a large foliose lichen that occurs worldwide on tree trunks in undisturbed forests with long ecological continuity. In comparison to many other lichens, L. pulmonaria is less tolerant to desiccation and highly sensitive to air pollution. The name- giving mycobiont (belonging to the Ascomycota), provides a protective layer covering a layer of the green-algal photobiont (Dictyochloropsis reticulata) and interspersed cyanobacterial cell clusters (Nostoc spec.). Recently performed metaproteome analyses Edited by: confirm the partition of functions in lichen partnerships. The ample functional diversity Nathalie Connil, Université de Rouen, France of the mycobiont contrasts the predominant function of the photobiont in production Reviewed by: (and secretion) of energy-rich carbohydrates, and the cyanobiont’s contribution by Dirk Benndorf, nitrogen fixation. In addition, high throughput and state-of-the-art metagenomics and Otto von Guericke University community fingerprinting, metatranscriptomics, and MS-based metaproteomics identify Magdeburg, Germany Guilherme Lanzi Sassaki, the bacterial community present on L. -
Supplementary Materials: Figure S1
1 Supplementary materials: Figure S1. Coral reef in Xiaodong Hai locality: (A) The southern part of the locality; (B) Reef slope; (C) Reef-flat, the upper subtidal zone; (D) Reef-flat, the lower intertidal zone. Figure S2. Algal communities in Xiaodong Hai at different seasons of 2016–2019: (A) Community of colonial blue-green algae, transect 1, the splash zone, the dry season of 2019; (B) Monodominant community of the red crust alga Hildenbrandia rubra, transect 3, upper intertidal, the rainy season of 2016; (C) Monodominant community of the red alga Gelidiella bornetii, transect 3, upper intertidal, the rainy season of 2018; (D) Bidominant community of the red alga Laurencia decumbens and the green Ulva clathrata, transect 3, middle intertidal, the dry season of 2019; (E) Polydominant community of algal turf with the mosaic dominance of red algae Tolypiocladia glomerulata (inset a), Palisada papillosa (center), and Centroceras clavulatum (inset b), transect 2, middle intertidal, the dry season of 2019; (F) Polydominant community of algal turf with the mosaic dominance of the red alga Hypnea pannosa and green Caulerpa chemnitzia, transect 1, lower intertidal, the dry season of 2016; (G) Polydominant community of algal turf with the mosaic dominance of brown algae Padina australis (inset a) and Hydroclathrus clathratus (inset b), the red alga Acanthophora spicifera (inset c) and the green alga Caulerpa chemnitzia, transect 1, lower intertidal, the dry season of 2019; (H) Sargassum spp. belt, transect 1, upper subtidal, the dry season of 2016. 2 3 Table S1. List of the seaweeds of Xiaodong Hai in 2016-2019. The abundance of taxa: rare sightings (+); common (++); abundant (+++). -
Phylogenetic Placement of Botryococcus Braunii (Trebouxiophyceae) and Botryococcus Sudeticus Isolate Utex 2629 (Chlorophyceae)1
J. Phycol. 40, 412–423 (2004) r 2004 Phycological Society of America DOI: 10.1046/j.1529-8817.2004.03173.x PHYLOGENETIC PLACEMENT OF BOTRYOCOCCUS BRAUNII (TREBOUXIOPHYCEAE) AND BOTRYOCOCCUS SUDETICUS ISOLATE UTEX 2629 (CHLOROPHYCEAE)1 Hoda H. Senousy, Gordon W. Beakes, and Ethan Hack2 School of Biology, University of Newcastle upon Tyne, Newcastle upon Tyne NE1 7RU, UK The phylogenetic placement of four isolates of a potential source of renewable energy in the form of Botryococcus braunii Ku¨tzing and of Botryococcus hydrocarbon fuels (Metzger et al. 1991, Metzger and sudeticus Lemmermann isolate UTEX 2629 was Largeau 1999, Banerjee et al. 2002). The best known investigated using sequences of the nuclear small species is Botryococcus braunii Ku¨tzing. This organism subunit (18S) rRNA gene. The B. braunii isolates has a worldwide distribution in fresh and brackish represent the A (two isolates), B, and L chemical water and is occasionally found in salt water. Although races. One isolate of B. braunii (CCAP 807/1; A race) it grows relatively slowly, it sometimes forms massive has a group I intron at Escherichia coli position 1046 blooms (Metzger et al. 1991, Tyson 1995). Botryococcus and isolate UTEX 2629 has group I introns at E. coli braunii strains differ in the hydrocarbons that they positions 516 and 1512. The rRNA sequences were accumulate, and they have been classified into three aligned with 53 previously reported rRNA se- chemical races, called A, B, and L. Strains in the A race quences from members of the Chlorophyta, includ- accumulate alkadienes; strains in the B race accumulate ing one reported for B. -
Plant-Parasitic Algae (Chlorophyta: Trentepohliales) in American Samoa1
Plant-Parasitic Algae (Chlorophyta: Trentepohliales) in American Samoa1 Fnd E. Erooks 2 Abstract: A survey conducted betweenJune 2000 and May 2002 on the island of Tutuila, American Samoa, recorded filamentous green algae of the order Tren tepohliales (CWorophyta) and their plant hosts. Putative pathogenicity of the parasitic genus Cephaleuros and its lichenized state, Strig;ula, was also inves tigated. Three genera and nine species were identified: Cephaleuros (five spp.), Phycopeltis (two spp.), and Stomatochroon (two spp.). A widely distributed species of Trentepohlia was not classified. These algae occurred on 146 plant species and cultivars in 101 genera and 48 families; 90% of the hosts were dicotyledonous plants. Cephaleuros spp. have aroused worldwide curiosity, confusion, and con cern for over a century. Their hyphaelike filaments, sporangiophores, and as sociated plant damage have led unsuspecting plant pathologists to misidentify them as fungi, and some phycologists question their parasitic ability. Of the five species of Cephaleuros identified, C. virescens was the most prevalent, followed by C. parasiticus. Leaf tissue beneath thalli of Cephaleuros spp. on 124 different hosts was dissected with a scalpel and depth of necrosis evaluated using a four point scale. No injury was observed beneath thalli on 6% of the hosts, but full thickness necrosis occurred on leaves of 43% of hosts. Tissue damage beneath nonlichenized Cephaleuros thalli was equal to or greater than damage beneath lichenized thalli (Strig;ula elegans). In spite of moderate to severe leaf necrosis caused by Cephaleuros spp., damage was usually confined to older leaves near the base of plants. Unhealthy, crowded, poorly maintained plants tended to have the highest percentage of leaf surface area affected by TrentepoWiales. -
Neoproterozoic Origin and Multiple Transitions to Macroscopic Growth in Green Seaweeds
Neoproterozoic origin and multiple transitions to macroscopic growth in green seaweeds Andrea Del Cortonaa,b,c,d,1, Christopher J. Jacksone, François Bucchinib,c, Michiel Van Belb,c, Sofie D’hondta, f g h i,j,k e Pavel Skaloud , Charles F. Delwiche , Andrew H. Knoll , John A. Raven , Heroen Verbruggen , Klaas Vandepoeleb,c,d,1,2, Olivier De Clercka,1,2, and Frederik Leliaerta,l,1,2 aDepartment of Biology, Phycology Research Group, Ghent University, 9000 Ghent, Belgium; bDepartment of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Zwijnaarde, Belgium; cVlaams Instituut voor Biotechnologie Center for Plant Systems Biology, 9052 Zwijnaarde, Belgium; dBioinformatics Institute Ghent, Ghent University, 9052 Zwijnaarde, Belgium; eSchool of Biosciences, University of Melbourne, Melbourne, VIC 3010, Australia; fDepartment of Botany, Faculty of Science, Charles University, CZ-12800 Prague 2, Czech Republic; gDepartment of Cell Biology and Molecular Genetics, University of Maryland, College Park, MD 20742; hDepartment of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138; iDivision of Plant Sciences, University of Dundee at the James Hutton Institute, Dundee DD2 5DA, United Kingdom; jSchool of Biological Sciences, University of Western Australia, WA 6009, Australia; kClimate Change Cluster, University of Technology, Ultimo, NSW 2006, Australia; and lMeise Botanic Garden, 1860 Meise, Belgium Edited by Pamela S. Soltis, University of Florida, Gainesville, FL, and approved December 13, 2019 (received for review June 11, 2019) The Neoproterozoic Era records the transition from a largely clear interpretation of how many times and when green seaweeds bacterial to a predominantly eukaryotic phototrophic world, creat- emerged from unicellular ancestors (8). ing the foundation for the complex benthic ecosystems that have There is general consensus that an early split in the evolution sustained Metazoa from the Ediacaran Period onward. -
Is Chloroplastic Class IIA Aldolase a Marine Enzyme&Quest;
The ISME Journal (2016) 10, 2767–2772 © 2016 International Society for Microbial Ecology All rights reserved 1751-7362/16 www.nature.com/ismej SHORT COMMUNICATION Is chloroplastic class IIA aldolase a marine enzyme? Hitoshi Miyasaka1, Takeru Ogata1, Satoshi Tanaka2, Takeshi Ohama3, Sanae Kano4, Fujiwara Kazuhiro4,7, Shuhei Hayashi1, Shinjiro Yamamoto1, Hiro Takahashi5, Hideyuki Matsuura6 and Kazumasa Hirata6 1Department of Applied Life Science, Sojo University, Kumamoto, Japan; 2The Kansai Electric Power Co., Environmental Research Center, Keihanna-Plaza, Kyoto, Japan; 3School of Environmental Science and Engineering, Kochi University of Technology, Kochi, Japan; 4Chugai Technos Corporation, Hiroshima, Japan; 5Graduate School of Horticulture, Faculty of Horticulture, Chiba University, Chiba, Japan and 6Environmental Biotechnology Laboratory, Graduate School of Pharmaceutical Sciences, Osaka University, Osaka, Japan Expressed sequence tag analyses revealed that two marine Chlorophyceae green algae, Chlamydo- monas sp. W80 and Chlamydomonas sp. HS5, contain genes coding for chloroplastic class IIA aldolase (fructose-1, 6-bisphosphate aldolase: FBA). These genes show robust monophyly with those of the marine Prasinophyceae algae genera Micromonas, Ostreococcus and Bathycoccus, indicating that the acquisition of this gene through horizontal gene transfer by an ancestor of the green algal lineage occurred prior to the divergence of the core chlorophytes (Chlorophyceae and Treboux- iophyceae) and the prasinophytes. The absence of this gene in some freshwater chlorophytes, such as Chlamydomonas reinhardtii, Volvox carteri, Chlorella vulgaris, Chlorella variabilis and Coccomyxa subellipsoidea, can therefore be explained by the loss of this gene somewhere in the evolutionary process. Our survey on the distribution of this gene in genomic and transcriptome databases suggests that this gene occurs almost exclusively in marine algae, with a few exceptions, and as such, we propose that chloroplastic class IIA FBA is a marine environment-adapted enzyme. -
Altitudinal Zonation of Green Algae Biodiversity in the French Alps
Altitudinal Zonation of Green Algae Biodiversity in the French Alps Adeline Stewart, Delphine Rioux, Fréderic Boyer, Ludovic Gielly, François Pompanon, Amélie Saillard, Wilfried Thuiller, Jean-Gabriel Valay, Eric Marechal, Eric Coissac To cite this version: Adeline Stewart, Delphine Rioux, Fréderic Boyer, Ludovic Gielly, François Pompanon, et al.. Altitu- dinal Zonation of Green Algae Biodiversity in the French Alps. Frontiers in Plant Science, Frontiers, 2021, 12, pp.679428. 10.3389/fpls.2021.679428. hal-03258608 HAL Id: hal-03258608 https://hal.archives-ouvertes.fr/hal-03258608 Submitted on 11 Jun 2021 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. fpls-12-679428 June 4, 2021 Time: 14:28 # 1 ORIGINAL RESEARCH published: 07 June 2021 doi: 10.3389/fpls.2021.679428 Altitudinal Zonation of Green Algae Biodiversity in the French Alps Adeline Stewart1,2,3, Delphine Rioux3, Fréderic Boyer3, Ludovic Gielly3, François Pompanon3, Amélie Saillard3, Wilfried Thuiller3, Jean-Gabriel Valay2, Eric Maréchal1* and Eric Coissac3* on behalf of The ORCHAMP Consortium 1 Laboratoire de Physiologie Cellulaire et Végétale, CEA, CNRS, INRAE, IRIG, Université Grenoble Alpes, Grenoble, France, 2 Jardin du Lautaret, CNRS, Université Grenoble Alpes, Grenoble, France, 3 Université Grenoble Alpes, Université Savoie Mont Blanc, CNRS, LECA, Grenoble, France Mountain environments are marked by an altitudinal zonation of habitat types. -
Comparative Analyses of Chloroplast Genome Data Representing Nine Green Algae in Sphaeropleales (Chlorophyceae, Chlorophyta)
Data in Brief 7 (2016) 558–570 Contents lists available at ScienceDirect Data in Brief journal homepage: www.elsevier.com/locate/dib Data article Comparative analyses of chloroplast genome data representing nine green algae in Sphaeropleales (Chlorophyceae, Chlorophyta) Karolina Fučíková n, Louise A. Lewis, Paul O. Lewis Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, CT, USA article info abstract Article history: The chloroplast genomes of green algae are highly variable in their Received 16 February 2016 architecture. In this article we summarize gene content across Received in revised form newly obtained and published chloroplast genomes in Chlor- 25 February 2016 ophyceae, including new data from nine of species in Sphaer- Accepted 1 March 2016 opleales (Chlorophyceae, Chlorophyta). We present genome Available online 9 March 2016 architecture information, including genome synteny analysis across two groups of species. Also, we provide a phylogenetic tree obtained from analysis of gene order data for species in Chlor- ophyceae with fully sequenced chloroplast genomes. Further analyses and interpretation of the data can be found in “Chlor- oplast phylogenomic data from the green algal order Sphaer- opleales (Chlorophyceae, Chlorophyta) reveal complex patterns of sequence evolution” (Fučíková et al., In review) [1]. & 2016 The Authors. Published by Elsevier Inc. This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). Specifications Table Subject area Biology More specific sub- Phylogenomics ject area Type of data Table, Figures, text file, tree file DOI of original article: http://dx.doi.org/10.1016/j.ympev.2016.01.022 n Corresponding author. -
JUDD W.S. Et. Al. (2002) Plant Systematics: a Phylogenetic Approach. Chapter 7. an Overview of Green
UNCORRECTED PAGE PROOFS An Overview of Green Plant Phylogeny he word plant is commonly used to refer to any auto- trophic eukaryotic organism capable of converting light energy into chemical energy via the process of photosynthe- sis. More specifically, these organisms produce carbohydrates from carbon dioxide and water in the presence of chlorophyll inside of organelles called chloroplasts. Sometimes the term plant is extended to include autotrophic prokaryotic forms, especially the (eu)bacterial lineage known as the cyanobacteria (or blue- green algae). Many traditional botany textbooks even include the fungi, which differ dramatically in being heterotrophic eukaryotic organisms that enzymatically break down living or dead organic material and then absorb the simpler products. Fungi appear to be more closely related to animals, another lineage of heterotrophs characterized by eating other organisms and digesting them inter- nally. In this chapter we first briefly discuss the origin and evolution of several separately evolved plant lineages, both to acquaint you with these important branches of the tree of life and to help put the green plant lineage in broad phylogenetic perspective. We then focus attention on the evolution of green plants, emphasizing sev- eral critical transitions. Specifically, we concentrate on the origins of land plants (embryophytes), of vascular plants (tracheophytes), of 1 UNCORRECTED PAGE PROOFS 2 CHAPTER SEVEN seed plants (spermatophytes), and of flowering plants dons.” In some cases it is possible to abandon such (angiosperms). names entirely, but in others it is tempting to retain Although knowledge of fossil plants is critical to a them, either as common names for certain forms of orga- deep understanding of each of these shifts and some key nization (e.g., the “bryophytic” life cycle), or to refer to a fossils are mentioned, much of our discussion focuses on clade (e.g., applying “gymnosperms” to a hypothesized extant groups. -
Plate. Acetabularia Schenckii
Training in Tropical Taxonomy 9-23 July, 2008 Tropical Field Phycology Workshop Field Guide to Common Marine Algae of the Bocas del Toro Area Margarita Rosa Albis Salas David Wilson Freshwater Jesse Alden Anna Fricke Olga Maria Camacho Hadad Kevin Miklasz Rachel Collin Andrea Eugenia Planas Orellana Martha Cecilia Díaz Ruiz Jimena Samper Villareal Amy Driskell Liz Sargent Cindy Fernández García Thomas Sauvage Ryan Fikes Samantha Schmitt Suzanne Fredericq Brian Wysor From July 9th-23rd, 2008, 11 graduate and 2 undergraduate students representing 6 countries (Colombia, Costa Rica, El Salvador, Germany, France and the US) participated in a 15-day Marine Science Network-sponsored workshop on Tropical Field Phycology. The students and instructors (Drs. Brian Wysor, Roger Williams University; Wilson Freshwater, University of North Carolina at Wilmington; Suzanne Fredericq, University of Louisiana at Lafayette) worked synergistically with the Smithsonian Institution's DNA Barcode initiative. As part of the Bocas Research Station's Training in Tropical Taxonomy program, lecture material included discussions of the current taxonomy of marine macroalgae; an overview and recent assessment of the diagnostic vegetative and reproductive morphological characters that differentiate orders, families, genera and species; and applications of molecular tools to pertinent questions in systematics. Instructors and students collected multiple samples of over 200 algal species by SCUBA diving, snorkeling and intertidal surveys. As part of the training in tropical taxonomy, many of these samples were used by the students to create a guide to the common seaweeds of the Bocas del Toro region. Herbarium specimens will be contributed to the Bocas station's reference collection and the University of Panama Herbarium. -
Lateral Gene Transfer of Anion-Conducting Channelrhodopsins Between Green Algae and Giant Viruses
bioRxiv preprint doi: https://doi.org/10.1101/2020.04.15.042127; this version posted April 23, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 5 Lateral gene transfer of anion-conducting channelrhodopsins between green algae and giant viruses Andrey Rozenberg 1,5, Johannes Oppermann 2,5, Jonas Wietek 2,3, Rodrigo Gaston Fernandez Lahore 2, Ruth-Anne Sandaa 4, Gunnar Bratbak 4, Peter Hegemann 2,6, and Oded 10 Béjà 1,6 1Faculty of Biology, Technion - Israel Institute of Technology, Haifa 32000, Israel. 2Institute for Biology, Experimental Biophysics, Humboldt-Universität zu Berlin, Invalidenstraße 42, Berlin 10115, Germany. 3Present address: Department of Neurobiology, Weizmann 15 Institute of Science, Rehovot 7610001, Israel. 4Department of Biological Sciences, University of Bergen, N-5020 Bergen, Norway. 5These authors contributed equally: Andrey Rozenberg, Johannes Oppermann. 6These authors jointly supervised this work: Peter Hegemann, Oded Béjà. e-mail: [email protected] ; [email protected] 20 ABSTRACT Channelrhodopsins (ChRs) are algal light-gated ion channels widely used as optogenetic tools for manipulating neuronal activity 1,2. Four ChR families are currently known. Green algal 3–5 and cryptophyte 6 cation-conducting ChRs (CCRs), cryptophyte anion-conducting ChRs (ACRs) 7, and the MerMAID ChRs 8. Here we 25 report the discovery of a new family of phylogenetically distinct ChRs encoded by marine giant viruses and acquired from their unicellular green algal prasinophyte hosts. -
2004 University of Connecticut Storrs, CT
Welcome Note and Information from the Co-Conveners We hope you will enjoy the NEAS 2004 meeting at the scenic Avery Point Campus of the University of Connecticut in Groton, CT. The last time that we assembled at The University of Connecticut was during the formative years of NEAS (12th Northeast Algal Symposium in 1973). Both NEAS and The University have come along way. These meetings will offer oral and poster presentations by students and faculty on a wide variety of phycological topics, as well as student poster and paper awards. We extend a warm welcome to all of our student members. The Executive Committee of NEAS has extended dormitory lodging at Project Oceanology gratis to all student members of the Society. We believe this shows NEAS members’ pride in and our commitment to our student members. This year we will be honoring Professor Arthur C. Mathieson as the Honorary Chair of the 43rd Northeast Algal Symposium. Art arrived with his wife, Myla, at the University of New Hampshire in 1965 from California. Art is a Professor of Botany and a Faculty in Residence at the Jackson Estuarine Laboratory of the University of New Hampshire. He received his Bachelor of Science and Master’s Degrees at the University of California, Los Angeles. In 1965 he received his doctoral degree from the University of British Columbia, Vancouver, Canada. Over a 43-year career Art has supervised many undergraduate and graduate students studying the ecology, systematics and mariculture of benthic marine algae. He has been an aquanaut-scientist for the Tektite II and also for the FLARE submersible programs.