Progress in Erigonine Spider Phylogeny—The Savignia-Group Is Not Monophyletic (Araneae: Linyphiidae)
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Reticulate Evolution and Phylogenetic Networks 6
CHAPTER Reticulate Evolution and Phylogenetic Networks 6 So far, we have modeled the evolutionary process as a bifurcating treelike process. The main feature of trees is that the flow of information in one lineage is independent of that in another lineage. In real life, however, many process- es—including recombination, hybridization, polyploidy, introgression, genome fusion, endosymbiosis, and horizontal gene transfer—do not abide by lineage independence and cannot be modeled by trees. Reticulate evolution refers to the origination of lineages through the com- plete or partial merging of two or more ancestor lineages. The nonvertical con- nections between lineages are referred to as reticulations. In this chapter, we introduce the language of networks and explain how networks can be used to study non-treelike phylogenetic processes. A substantial part of this chapter will be dedicated to the evolutionary relationships among prokaryotes and the very intriguing question of the origin of the eukaryotic cell. Networks Networks were briefly introduced in Chapter 4 in the context of protein-protein interactions. Here, we provide a more formal description of networks and their use in phylogenetics. As mentioned in Chapter 5, trees are connected graphs in which any two nodes are connected by a single path. In phylogenetics, a network is a connected graph in which at least two nodes are connected by two or more pathways. In other words, a network is a connected graph that is not a tree. All networks contain at least one cycle, i.e., a path of branches that can be followed in one direction from any starting point back to the starting point. -
Aranhas (Araneae, Arachnida) Do Estado De São Paulo, Brasil: Diversidade, Esforço Amostral E Estado Do Conhecimento
Biota Neotrop., vol. 11(Supl.1) Aranhas (Araneae, Arachnida) do Estado de São Paulo, Brasil: diversidade, esforço amostral e estado do conhecimento Antonio Domingos Brescovit1,4, Ubirajara de Oliveira2,3 & Adalberto José dos Santos2 1Laboratório de Artrópodes, Instituto Butantan, Av. Vital Brasil, n. 1500, CEP 05503-900, São Paulo, SP, Brasil, e-mail: [email protected] 2Departamento de Zoologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais – UFMG, Av. Antonio Carlos, n. 6627, CEP 31270-901, Belo Horizonte, MG, Brasil, e-mail: [email protected], [email protected] 3Pós-graduação em Ecologia, Conservação e Manejo da Vida Silvestre, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais – UFMG 4Autor para correspondência: Antonio Domingos Brescovit, e-mail: [email protected] BRESCOVIT, A.D., OLIVEIRA, U. & SANTOS, A.J. Spiders (Araneae, Arachnida) from São Paulo State, Brazil: diversity, sampling efforts, and state-of-art. Biota Neotrop. 11(1a): http://www.biotaneotropica.org. br/v11n1a/en/abstract?inventory+bn0381101a2011. Abstract: In this study we present a database of spiders described and registered from the Neotropical region between 1757 and 2008. Results are focused on the diversity of the group in the State of São Paulo, compared to other Brazilian states. Data was compiled from over 25,000 records, published in scientific papers dealing with Neotropical fauna. These records enabled the evaluation of the current distribution of the species, the definition of collection gaps and priority biomes, and even future areas of endemism for Brazil. A total of 875 species, distributed in 50 families, have been described from the State of São Paulo. -
Higher-Level Phylogenetics of Linyphiid Spiders (Araneae, Linyphiidae) Based on Morphological and Molecular Evidence
Cladistics Cladistics 25 (2009) 231–262 10.1111/j.1096-0031.2009.00249.x Higher-level phylogenetics of linyphiid spiders (Araneae, Linyphiidae) based on morphological and molecular evidence Miquel A. Arnedoa,*, Gustavo Hormigab and Nikolaj Scharff c aDepartament Biologia Animal, Universitat de Barcelona, Av. Diagonal 645, E-8028 Barcelona, Spain; bDepartment of Biological Sciences, The George Washington University, Washington, DC 20052, USA; cDepartment of Entomology, Natural History Museum of Denmark, Zoological Museum, University of Copenhagen, Universitetsparken 15, DK-2100 Copenhagen, Denmark Accepted 19 November 2008 Abstract This study infers the higher-level cladistic relationships of linyphiid spiders from five genes (mitochondrial CO1, 16S; nuclear 28S, 18S, histone H3) and morphological data. In total, the character matrix includes 47 taxa: 35 linyphiids representing the currently used subfamilies of Linyphiidae (Stemonyphantinae, Mynogleninae, Erigoninae, and Linyphiinae (Micronetini plus Linyphiini)) and 12 outgroup species representing nine araneoid families (Pimoidae, Theridiidae, Nesticidae, Synotaxidae, Cyatholipidae, Mysmenidae, Theridiosomatidae, Tetragnathidae, and Araneidae). The morphological characters include those used in recent studies of linyphiid phylogenetics, covering both genitalic and somatic morphology. Different sequence alignments and analytical methods produce different cladistic hypotheses. Lack of congruence among different analyses is, in part, due to the shifting placement of Labulla, Pityohyphantes, -
Surface-Active Spiders (Araneae) in Ley and Field Margins
Norw. J. Entomol. 51, 57–66. 2004 Surface-active spiders (Araneae) in ley and field margins Reidun Pommeresche Pommeresche, R. 2004. Surface-active spiders (Araneae) in ley and field margins. Norw. J. Entomol. 51, 57-66. Surface-active spiders were sampled from a ley and two adjacent field margins on a dairy farm in western Norway, using pitfall traps from April to June 2001. Altogether, 1153 specimens, represent- ing 33 species, were found. In total, 10 species were found in the ley, 16 species in the edge of the ley, 22 species in the field margin “ley/forest” and 16 species in the field margin “ley/stream”. Erigone atra, Bathyphantes gracilis, Savignia frontata and Collinsia inerrans were the most abun- dant species in the ley. C. inerrans was not found in the field margins. This species is previously recorded only a few times in Norway. Diplocephalus latifrons, Tapinocyba insecta, Dicymbium tibiale, Bathyphantes nigrinus and Diplostyla concolor were most abundant in the field margin “ley/ forest”. D. latifrons, D. tibiale and Pardosa amentata were most abundant in the field margin “ley/ stream”, followed by E. atra and B. gracilis. The present results were compared to results from ley and pasture on another farm in the region, recorded in 2000. A Detrended Correspondence Analyses (DCA) of the data sets showed that the spider fauna from the leys were more similar, independent of location, than the fauna in ley and field margins on the same locality. The interactions between cultivated fields and field margins according to spider species composition, dominance pattern and habitat preferences are discussed. -
Uehara-Prado Marcio D.Pdf
FICHA CATALOGRÁFICA ELABORADA PELA BIBLIOTECA DO INSTITUTO DE BIOLOGIA – UNICAMP Uehara-Prado, Marcio Ue3a Artrópodes terrestres como indicadores biológicos de perturbação antrópica / Marcio Uehara do Prado. – Campinas, SP: [s.n.], 2009. Orientador: André Victor Lucci Freitas. Tese (doutorado) – Universidade Estadual de Campinas, Instituto de Biologia. 1. Indicadores (Biologia). 2. Borboleta . 3. Artrópode epigéico. 4. Mata Atlântica. 5. Cerrados. I. Freitas, André Victor Lucci. II. Universidade Estadual de Campinas. Instituto de Biologia. III. Título. (rcdt/ib) Título em inglês: Terrestrial arthropods as biological indicators of anthropogenic disturbance. Palavras-chave em inglês : Indicators (Biology); Butterflies; Epigaeic arthropod; Mata Atlântica (Brazil); Cerrados. Área de concentração: Ecologia. Titulação: Doutor em Ecologia. Banca examinadora: André Victor Lucci Freitas, Fabio de Oliveira Roque, Paulo Roberto Guimarães Junior, Flavio Antonio Maës dos Santos, Thomas Michael Lewinsohn. Data da defesa : 21/08/2009. Programa de Pós-Graduação: Ecologia. iv Dedico este trabalho ao professor Keith S. Brown Jr. v AGRADECIMENTOS Ao longo dos vários anos da tese, muitas pessoas contribuiram direta ou indiretamente para a sua execução. Gostaria de agradecer nominalmente a todos, mas o espaço e a memória, ambos limitados, não permitem. Fica aqui o meu obrigado geral a todos que me ajudaram de alguma forma. Ao professor André V.L. Freitas, por sempre me incentivar e me apoiar em todos os momentos da tese, e por todo o ensinamento passado ao longo de nossa convivência de uma década. A minha família: Dona Júlia, Bagi e Bete, pelo apoio incondicional. A Cris, por ser essa companheira incrível, sempre cuidando muito bem de mim. A todas as meninas que participaram do projeto original “Artrópodes como indicadores biológicos de perturbação antrópica em Floresta Atlântica”, em especial a Juliana de Oliveira Fernandes, Huang Shi Fang, Mariana Juventina Magrini, Cristiane Matavelli, Tatiane Gisele Alves e Regiane Moreira de Oliveira. -
Distribution of Spiders in Coastal Grey Dunes
kaft_def 7/8/04 11:22 AM Pagina 1 SPATIAL PATTERNS AND EVOLUTIONARY D ISTRIBUTION OF SPIDERS IN COASTAL GREY DUNES Distribution of spiders in coastal grey dunes SPATIAL PATTERNS AND EVOLUTIONARY- ECOLOGICAL IMPORTANCE OF DISPERSAL - ECOLOGICAL IMPORTANCE OF DISPERSAL Dries Bonte Dispersal is crucial in structuring species distribution, population structure and species ranges at large geographical scales or within local patchily distributed populations. The knowledge of dispersal evolution, motivation, its effect on metapopulation dynamics and species distribution at multiple scales is poorly understood and many questions remain unsolved or require empirical verification. In this thesis we contribute to the knowledge of dispersal, by studying both ecological and evolutionary aspects of spider dispersal in fragmented grey dunes. Studies were performed at the individual, population and assemblage level and indicate that behavioural traits narrowly linked to dispersal, con- siderably show [adaptive] variation in function of habitat quality and geometry. Dispersal also determines spider distribution patterns and metapopulation dynamics. Consequently, our results stress the need to integrate knowledge on behavioural ecology within the study of ecological landscapes. / Promotor: Prof. Dr. Eckhart Kuijken [Ghent University & Institute of Nature Dries Bonte Conservation] Co-promotor: Prf. Dr. Jean-Pierre Maelfait [Ghent University & Institute of Nature Conservation] and Prof. Dr. Luc lens [Ghent University] Date of public defence: 6 February 2004 [Ghent University] Universiteit Gent Faculteit Wetenschappen Academiejaar 2003-2004 Distribution of spiders in coastal grey dunes: spatial patterns and evolutionary-ecological importance of dispersal Verspreiding van spinnen in grijze kustduinen: ruimtelijke patronen en evolutionair-ecologisch belang van dispersie door Dries Bonte Thesis submitted in fulfilment of the requirements for the degree of Doctor [Ph.D.] in Sciences Proefschrift voorgedragen tot het bekomen van de graad van Doctor in de Wetenschappen Promotor: Prof. -
A Summary List of Fossil Spiders
A summary list of fossil spiders compiled by Jason A. Dunlop (Berlin), David Penney (Manchester) & Denise Jekel (Berlin) Suggested citation: Dunlop, J. A., Penney, D. & Jekel, D. 2010. A summary list of fossil spiders. In Platnick, N. I. (ed.) The world spider catalog, version 10.5. American Museum of Natural History, online at http://research.amnh.org/entomology/spiders/catalog/index.html Last udated: 10.12.2009 INTRODUCTION Fossil spiders have not been fully cataloged since Bonnet’s Bibliographia Araneorum and are not included in the current Catalog. Since Bonnet’s time there has been considerable progress in our understanding of the spider fossil record and numerous new taxa have been described. As part of a larger project to catalog the diversity of fossil arachnids and their relatives, our aim here is to offer a summary list of the known fossil spiders in their current systematic position; as a first step towards the eventual goal of combining fossil and Recent data within a single arachnological resource. To integrate our data as smoothly as possible with standards used for living spiders, our list follows the names and sequence of families adopted in the Catalog. For this reason some of the family groupings proposed in Wunderlich’s (2004, 2008) monographs of amber and copal spiders are not reflected here, and we encourage the reader to consult these studies for details and alternative opinions. Extinct families have been inserted in the position which we hope best reflects their probable affinities. Genus and species names were compiled from established lists and cross-referenced against the primary literature. -
A New Spider Genus (Araneae: Linyphiidae: Erigoninae) from a Tropical Montane Cloud Forest of Mexico
European Journal of Taxonomy 731: 97–116 ISSN 2118-9773 https://doi.org/10.5852/ejt.2021.731.1207 www.europeanjournaloftaxonomy.eu 2021 · Ibarra-Núñez G. et al. This work is licensed under a Creative Commons Attribution License (CC BY 4.0). Research article urn:lsid:zoobank.org:pub:0EFF0D93-EF7D-4943-BEBF-995E25D34544 A new spider genus (Araneae: Linyphiidae: Erigoninae) from a tropical montane cloud forest of Mexico Guillermo IBARRA-NÚÑEZ 1,*, David CHAMÉ-VÁZQUEZ 2 & Julieta MAYA-MORALES 3 1,2,3 El Colegio de la Frontera Sur, Unidad Tapachula. Carretera Antiguo Aeropuerto km 2.5, Apdo. Postal 36, Tapachula, Chiapas 30700, Mexico. * Corresponding author: [email protected] 2 Email: [email protected] 3 Email: [email protected] 1 urn:lsid:zoobank.org:author:61F4CDEF-04B8-4F8E-83DF-BFB576205F7A 2 urn:lsid:zoobank.org:author:CDA7A4DA-D0CF-4445-908A-3096B1C8D55D 3 urn:lsid:zoobank.org:author:BE1F67AB-94A6-45F7-A311-8C99E16139BA Abstract. A new genus and species of spider (Araneae, Linyphiidae, Erigoninae) from a tropical montane cloud forest of Mexico is described from both male and female specimens, Xim trenzado gen. et sp. nov. A phylogenetic parsimony analysis situates Xim gen. nov. as a distinct genus among the distal Erigoninae. Xim gen. nov. is sister to a clade including Ceratinopsis, Tutaibo and Sphecozone, but differs from those genera by having a high cymbium, large paracymbium, short straight embolus, male cheliceral stridulatory striae widely and evenly spaced, both sexes with a post-ocular lobe, male with two series of prolateral macrosetae on femur I, and the female by having strongly oblong, u-shaped spermathecae. -
SA Spider Checklist
REVIEW ZOOS' PRINT JOURNAL 22(2): 2551-2597 CHECKLIST OF SPIDERS (ARACHNIDA: ARANEAE) OF SOUTH ASIA INCLUDING THE 2006 UPDATE OF INDIAN SPIDER CHECKLIST Manju Siliwal 1 and Sanjay Molur 2,3 1,2 Wildlife Information & Liaison Development (WILD) Society, 3 Zoo Outreach Organisation (ZOO) 29-1, Bharathi Colony, Peelamedu, Coimbatore, Tamil Nadu 641004, India Email: 1 [email protected]; 3 [email protected] ABSTRACT Thesaurus, (Vol. 1) in 1734 (Smith, 2001). Most of the spiders After one year since publication of the Indian Checklist, this is described during the British period from South Asia were by an attempt to provide a comprehensive checklist of spiders of foreigners based on the specimens deposited in different South Asia with eight countries - Afghanistan, Bangladesh, Bhutan, India, Maldives, Nepal, Pakistan and Sri Lanka. The European Museums. Indian checklist is also updated for 2006. The South Asian While the Indian checklist (Siliwal et al., 2005) is more spider list is also compiled following The World Spider Catalog accurate, the South Asian spider checklist is not critically by Platnick and other peer-reviewed publications since the last scrutinized due to lack of complete literature, but it gives an update. In total, 2299 species of spiders in 67 families have overview of species found in various South Asian countries, been reported from South Asia. There are 39 species included in this regions checklist that are not listed in the World Catalog gives the endemism of species and forms a basis for careful of Spiders. Taxonomic verification is recommended for 51 species. and participatory work by arachnologists in the region. -
Dippenaar MARION.Qxd
The biodiversity and species composition of the spider community of Marion Island, a recent survey (Arachnida: Araneae) T.T. KHOZA, S.M. DIPPENAAR and A.S. DIPPENAAR-SCHOEMAN Khoza, T.T., S.M. Dippenaar and A.S. Dippenaar-Schoeman. 2005. The biodiversity and species composition of the spider community of Marion Island, a recent survey (Arach- nida: Araneae). Koedoe 48(2): 103–107. Pretoria. ISSN 0075-6458. Marion Island, the larger of the Prince Edward Islands, lies in the sub-Antarctic bio- geographic region in the southern Indian Ocean. From previous surveys, four spider species are known from Marion. The last survey was undertaken in 1968. During this study a survey was undertaken over a period of four weeks on the island to determine the present spider diversity and to record information about the habitat preferences and general behaviour of the species present. Three collection methods (active search, Tull- gren funnels and pitfall traps) were used, and spiders were sampled from six habitat sites. A total of 430 spiders represented by four families were collected, Myro kergue- lenesis crozetensis Enderlein, 1909 and M. paucispinosus Berland, 1947 (Desidae), Prinerigone vagans (Audouin, 1826) (Linyphiidae), Cheiracanthium furculatum Karsch, 1879 (Miturgidae) and an immature Salticidae. The miturgid and salticid are first records. Neomaso antarticus (Hickman, 1939) (Linyphiidae) was absent from sam- ples, confirming that the species might have been an erroneous record. Key words: Araneae, biodiversity, Desidae, Linyphiidae, Marion Island, Miturgidae, Salticidae, spiders. T.T. Khoza & S.M. Dippenaar, School of Molecular and Life Sciences, University of Limpopo, Private Bag X1106, Sovenga, 0727 Republic of South Africa; A.S. -
The Effect of Native Forest Dynamics Upon the Arrangements of Species in Oak Forests-Analysis of Heterogeneity Effects at the Example of Epigeal Arthropods
Master thesis Summer term 2011 The effect of native forest dynamics upon the arrangements of species in oak forests-analysis of heterogeneity effects at the example of epigeal arthropods Die Auswirkungen natürlicher Walddynamiken auf die Artengefüge in Eichenwäldern: Untersuchung von Heterogenitätseffekten am Beispiel epigäischer Raubarthropoden Study course: Ecology, Evolution and Nature conservation (M.Sc.) University of Potsdam presented by Marco Langer 757463 1. Evaluator: Prof. Dr. Monika Wulf, Institut für Landnutzungssysteme Leibniz-Zentrum für Agrarlandschaftsforschung e.V. 2. Evaluator: Tim Mark Ziesche, Landeskompetenzzentrum Eberswalde Published online at the Institutional Repository of the University of Potsdam: URL http://opus.kobv.de/ubp/volltexte/2011/5558/ URN urn:nbn:de:kobv:517-opus-55588 http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-55588 Abstract The heterogeneity in species assemblages of epigeal spiders was studied in a natural forest and in a managed forest. Additionally the effects of small-scale microhabitat heterogeneity of managed and unmanaged forests were determined by analysing the spider assemblages of three different microhabitat structures (i. vegetation, ii. dead wood. iii. litter cover). The spider were collected in a block design by pitfall traps (n=72) in a 4-week interval. To reveal key environmental factors affecting the spider distribution abiotic and biotic habitat parameters (e.g. vegetation parameters, climate parameters, soil moisture) were assessed around each pitfall trap. A TWINSPAN analyses separated pitfall traps from the natural forest from traps of the managed forest. A subsequent discriminant analyses revealed that the temperature, the visible sky, the plant diversity and the mean diameter at breast height as key discriminant factors between the microhabitat groupings designated by The TWINSPAN analyses. -
Biodiversity from Caves and Other Subterranean Habitats of Georgia, USA
Kirk S. Zigler, Matthew L. Niemiller, Charles D.R. Stephen, Breanne N. Ayala, Marc A. Milne, Nicholas S. Gladstone, Annette S. Engel, John B. Jensen, Carlos D. Camp, James C. Ozier, and Alan Cressler. Biodiversity from caves and other subterranean habitats of Georgia, USA. Journal of Cave and Karst Studies, v. 82, no. 2, p. 125-167. DOI:10.4311/2019LSC0125 BIODIVERSITY FROM CAVES AND OTHER SUBTERRANEAN HABITATS OF GEORGIA, USA Kirk S. Zigler1C, Matthew L. Niemiller2, Charles D.R. Stephen3, Breanne N. Ayala1, Marc A. Milne4, Nicholas S. Gladstone5, Annette S. Engel6, John B. Jensen7, Carlos D. Camp8, James C. Ozier9, and Alan Cressler10 Abstract We provide an annotated checklist of species recorded from caves and other subterranean habitats in the state of Georgia, USA. We report 281 species (228 invertebrates and 53 vertebrates), including 51 troglobionts (cave-obligate species), from more than 150 sites (caves, springs, and wells). Endemism is high; of the troglobionts, 17 (33 % of those known from the state) are endemic to Georgia and seven (14 %) are known from a single cave. We identified three biogeographic clusters of troglobionts. Two clusters are located in the northwestern part of the state, west of Lookout Mountain in Lookout Valley and east of Lookout Mountain in the Valley and Ridge. In addition, there is a group of tro- globionts found only in the southwestern corner of the state and associated with the Upper Floridan Aquifer. At least two dozen potentially undescribed species have been collected from caves; clarifying the taxonomic status of these organisms would improve our understanding of cave biodiversity in the state.