Identification of an Anti-Diabetic, Orally Available Small Molecule That

Total Page:16

File Type:pdf, Size:1020Kb

Identification of an Anti-Diabetic, Orally Available Small Molecule That Clinical and Translational Report Identification of an Anti-diabetic, Orally Available Small Molecule that Regulates TXNIP Expression and Glucagon Action Graphical Abstract Authors Lance A. Thielen, Junqin Chen, Gu Jing, ..., Praveen Sethupathy, Jason K. Kim, Anath Shalev Correspondence [email protected] In Brief Here, Thielen et al. show that a newly designed, orally available small molecule inhibited pancreatic islet TXNIP expression, glucagon secretion, hepatic glucagon action, glucose production, and steatosis, and exhibited strong anti- diabetic effects in mouse models of type 1 and type 2 diabetes, promising a distinct and innovative diabetes treatment approach. Highlights d The small molecule SRI-37330 inhibits TXNIP expression in mouse and human islets d SRI-37330 decreases glucagon secretion and action and blocks hepatic glucose output d Oral SRI-37330 reverses obesity- and STZ-induced diabetes and hepatic steatosis in mice d Its antidiabetic effects and safety profile make SRI-37330 an attractive drug candidate Thielen et al., 2020, Cell Metabolism 32, 1–13 September 1, 2020 ª 2020 Elsevier Inc. https://doi.org/10.1016/j.cmet.2020.07.002 ll Please cite this article in press as: Thielen et al., Identification of an Anti-diabetic, Orally Available Small Molecule that Regulates TXNIP Expression and Glucagon Action, Cell Metabolism (2020), https://doi.org/10.1016/j.cmet.2020.07.002 ll Clinical and Translational Report Identification of an Anti-diabetic, Orally Available Small Molecule that Regulates TXNIP Expression and Glucagon Action Lance A. Thielen,1 Junqin Chen,1 Gu Jing,1 Omar Moukha-Chafiq,2 Guanlan Xu,1 SeongHo Jo,1 Truman B. Grayson,1 Brian Lu,1 Peng Li,3 Corinne E. Augelli-Szafran,2 Mark J. Suto,2 Matt Kanke,4 Praveen Sethupathy,4 Jason K. Kim,5 and Anath Shalev1,6,* 1Comprehensive Diabetes Center and Department of Medicine, Division of Endocrinology, Diabetes, and Metabolism, University of Alabama at Birmingham, Birmingham, AL 35294, USA 2Drug Discovery Division, Southern Research, Birmingham, AL 35205, USA 3School of Nursing, University of Alabama at Birmingham, Birmingham, AL 35294, USA 4Department of Biomedical Sciences, College of Veterinary Medicine, Cornell University, Ithaca, NY 14853, USA 5Program in Molecular Medicine and Division of Endocrinology, Metabolism and Diabetes, Department of Medicine, University of Massachusetts Medical School, Worcester, MA 01655, USA 6Lead Contact *Correspondence: [email protected] https://doi.org/10.1016/j.cmet.2020.07.002 SUMMARY Diabetes is characterized by hyperglycemia, loss of functional islet beta cell mass, deficiency of glucose- lowering insulin, and persistent alpha cell secretion of gluconeogenic glucagon. Still, no therapies that target these underlying processes are available. We therefore performed high-throughput screening of 300,000 compounds and extensive medicinal chemistry optimization and here report the discovery of SRI-37330, an orally bioavailable, non-toxic small molecule, which effectively rescued mice from streptozotocin- and obesity-induced (db/db) diabetes. Interestingly, in rat cells and in mouse and human islets, SRI-37330 in- hibited expression and signaling of thioredoxin-interacting protein, which we have previously found to be elevated in diabetes and to have detrimental effects on islet function. In addition, SRI-37330 treatment in- hibited glucagon secretion and function, reduced hepatic glucose production, and reversed hepatic steato- sis. Thus, these studies describe a newly designed chemical compound that, compared to currently available therapies, may provide a distinct and effective approach to treating diabetes. INTRODUCTION and Orci, 1975). Insufficient production of the glucose-lowering hormone insulin and high levels of the gluconeogenic hormone Type 2 diabetes (T2D) has become a worldwide epidemic and glucagon combine to exacerbate the hyperglycemia that is the poses major therapeutic challenges. Over the last several de- hallmark of T2D, leading to a vicious cycle of glucose toxicity cades, it has been recognized as a bihormonal disease distin- that furthers beta cell dysfunction (Poitout and Robertson, guished by the combination of hypoinsulinemia due to loss of 2002). However, while T2D management has improved signifi- functional pancreatic beta cell mass and hyperglucagonemia cantly over the years, therapies that target these underlying pro- due to persistent alpha-cell-mediated glucagon secretion (Unger cesses are still lacking. Context and Significance The global health problem of diabetes is getting worse, but therapies that target the underlying causes are still lacking. By screening 300,000 small molecules, researchers at Birmingham, Alabama identified a compound that downregulates the detrimental, pro-diabetic protein TXNIP in mouse and human pancreatic islets. When given orally to mice, this small mole- cule also lowered serum levels of glucagon, a counter-regulatory hormone to insulin that is elevated in diabetes and in- creases blood glucose levels. Furthermore, the compound prevented fatty liver, inhibited unnecessary glucose production by the liver, and reversed diabetes in different mouse models of type 1 and type 2 diabetes. Compared to currently available drugs, this compound may therefore provide an effective and highly promising new approach to diabetes therapy. Cell Metabolism 32, 1–13, September 1, 2020 ª 2020 Elsevier Inc. 1 Please cite this article in press as: Thielen et al., Identification of an Anti-diabetic, Orally Available Small Molecule that Regulates TXNIP Expression and Glucagon Action, Cell Metabolism (2020), https://doi.org/10.1016/j.cmet.2020.07.002 ll Clinical and Translational Report We previously identified thioredoxin-interacting protein regulated, whereas the insulin-like growth factor-1 receptor (TXNIP) as the top glucose-induced gene in a human islet gene (IGF-1R), which recently was found to inhibit TXNIP expression expression microarray study (Shalev et al., 2002) and as a critical (Nagaraj et al., 2018), was upregulated. In addition, V-MAF avian link between glucose toxicity and beta cell loss (Chen et al., musculoaponeurotic fibrosarcoma oncogene homolog A 2008b), suggesting that this arrestin protein may play an impor- (MAFA), an insulin transcription factor previously shown to be tant role in T2D. Indeed, TXNIP expression is not only upregu- downregulated by TXNIP (Xu et al., 2013), was upregulated by lated by glucose (Minn et al., 2005; Shalev et al., 2002); it is our TXNIP inhibitor. Similarly, Bcl-2-like 1 (BCL2L1), which is also increased in different mouse models of T2D and in human involved in the control of beta cell apoptosis and increased in islets from individuals with diabetes (Chen et al., 2008a, 2008b; beta-cell-specific TXNIP knockout mice (Chen et al., 2008a), Minn et al., 2005; Xu et al., 2013). Moreover, genetic TXNIP dele- and connective tissue growth factor (CTGF), which is involved tion has been shown to protect mice from diabetes and has in developmental beta cell proliferation (Riley et al., 2015) and beneficial effects on islet biology (Chen et al., 2008a; Lerner upregulated by TXNIP inhibition (Wu et al., 2018), were both up- et al., 2012; Xu et al., 2013). Together, this suggested that TXNIP regulated in response to SRI-37330. Finally, we also observed inhibition may represent an attractive novel approach to T2D lower expression of the inflammasome, NACHT, LRR, and PYD treatment, but no specific TXNIP inhibitors were available. The domain-containing protein 1 (NLRP1), consistent with the fact goal of the present studies was therefore to identify an orally that TXNIP has been shown to promote inflammasome activa- bioavailable, small molecule TXNIP inhibitor and test its effects tion (Zhou et al., 2010). in human islets and different mouse models of diabetes. We have previously shown that TXNIP expression, especially in the context of high glucose and diabetes, is regulated via a RESULTS AND DISCUSSION distinct E-box motif in the TXNIP promoter that is well conserved across species (Cha-Molstad et al., 2009; Minn et al., 2005). We High-throughput screening of 300,000 small molecules and therefore next investigated whether SRI-37330 confers its ef- several medicinal chemistry iterations, modifications, and opti- fects through this element. Indeed, while human TXNIP promoter mizations led to the identification of SRI-37330 (Figure 1A), a deletions of over 1,000 bp did not diminish the inhibitory effects lead compound, based on its efficacy of inhibiting TXNIP expres- of SRI-37330 as assessed by luciferase activity, mutation of the sion, its pharmacokinetic properties, favorable safety profile, E-box motif completely blunted these effects (Figure 2A). More- and lack of off-target liabilities at least in the currently available over, this E-box motif was able to confer SRI-37330 responsive- panel (Table S1A). Transient transfection experiments showed ness to a heterologous SV40 promoter (Figure 2B). Furthermore, that SRI-37330 inhibited the activity of the human TXNIP pro- chromatin immunoprecipitation revealed that SRI-37330 effec- moter in INS-1 cells by 70% (Figure 1B), consistent with inhibi- tively inhibited polymerase II (Pol II) binding to the E-box motif re- tion at the transcriptional level. SRI-37330 also inhibited endog- gion of the TXNIP promoter, but not to an upstream TXNIP pro- enous TXNIP mRNA expression as shown by seven-point dose- moter region or to an established Pol II binding site in insulin response qRT-PCR assays (Figure 1C), revealing an IC50 of receptor
Recommended publications
  • Minireview: Thioredoxin-Interacting Protein: Regulation and Function in the Pancreatic ␤-Cell
    MINIREVIEW Minireview: Thioredoxin-Interacting Protein: Regulation and Function in the Pancreatic ␤-Cell Anath Shalev Comprehensive Diabetes Center and Department of Medicine, Division of Endocrinology, Diabetes and Metabolism, University of Alabama at Birmingham, Birmingham, Alabama 35294 Pancreatic ␤-cells are responsible for insulin production, and loss of functional ␤-cell mass is now recognized as a critical step in the pathogenesis of both type 1 and type 2 diabetes. However, the factors controlling the life and death of the pancreatic ␤-cell have only started to be elucidated. Discovered as the top glucose-induced gene in a human islet microarray study 12 years ago, thioredoxin-interacting protein (TXNIP) has now emerged as such a key player in pancreatic ␤-cell biology. Since then, ␤-cell expression of TXNIP has been found to be tightly regulated by multiple factors and to be dramatically increased in diabetic islets. Elevated TXNIP levels induce ␤-cell apoptosis, whereas TXNIP deficiency protects against type 1 and type 2 diabetes by promoting ␤-cell survival. TXNIP interacts with and inhibits thioredoxin and thereby controls the cellular redox state, but it also belongs to the ␣-arrestin family of proteins and regulates a variety of metabolic processes. Most recently, TXNIP has been discovered to control ␤-cell microRNA expres- sion, ␤-cell function, and insulin production. In this review, the current state of knowledge re- garding regulation and function of TXNIP in the pancreatic ␤-cell and the implications for drug development are discussed. (Molecular Endocrinology 28: 1211–1220, 2014) he gene encoding thioredoxin-interacting protein hypoglycemia and elevated plasma insulin, triglycerides, T(TXNIP) was first cloned in 1994 (20 years ago) from ketone bodies, and free fatty acids (8, 9).
    [Show full text]
  • Role of Thioredoxin-Interacting Protein in Diseases and Its Therapeutic Outlook
    International Journal of Molecular Sciences Review Role of Thioredoxin-Interacting Protein in Diseases and Its Therapeutic Outlook Naila Qayyum 1,†, Muhammad Haseeb 1,† , Moon Suk Kim 1 and Sangdun Choi 1,2,* 1 Department of Molecular Science and Technology, Ajou University, Suwon 16499, Korea; [email protected] (N.Q.); [email protected] (M.H.); [email protected] (M.S.K.) 2 S&K Therapeutics, Woncheon Hall 135, Ajou University, Suwon 16499, Korea * Correspondence: [email protected] † These authors contributed equally to this work. Abstract: Thioredoxin-interacting protein (TXNIP), widely known as thioredoxin-binding protein 2 (TBP2), is a major binding mediator in the thioredoxin (TXN) antioxidant system, which involves a reduction-oxidation (redox) signaling complex and is pivotal for the pathophysiology of some diseases. TXNIP increases reactive oxygen species production and oxidative stress and thereby contributes to apoptosis. Recent studies indicate an evolving role of TXNIP in the pathogenesis of complex diseases such as metabolic disorders, neurological disorders, and inflammatory illnesses. In addition, TXNIP has gained significant attention due to its wide range of functions in energy metabolism, insulin sensitivity, improved insulin secretion, and also in the regulation of glucose and tumor suppressor activities in various cancers. This review aims to highlight the roles of TXNIP in the field of diabetology, neurodegenerative diseases, and inflammation. TXNIP is found to be a promising novel therapeutic target in the current review, not only in the aforementioned diseases but also in prolonged microvascular and macrovascular diseases. Therefore, TXNIP inhibitors hold promise for preventing the growing incidence of complications in relevant diseases.
    [Show full text]
  • Thioredoxin Interacting Protein (TXNIP) Rs7212 Polymorphism Is Associated with Arterial Stiffness in the Brazilian General Population
    Journal of Human Hypertension (2012) 26, 340 --342 & 2012 Macmillan Publishers Limited All rights reserved 0950-9240/12 www.nature.com/ RESEARCH LETTER Thioredoxin interacting protein (TXNIP) rs7212 polymorphism is associated with arterial stiffness in the Brazilian general population Journal of Human Hypertension (2012) 26, 340 --342; been previously described.8 TXNIP rs7212 was chosen based on doi:10.1038/jhh.2011.102; published online 24 November 2011 the previous association of this marker with diabetes in the Brazilian population (Ferreira, NE, unpublished results). In the Thioredoxin interacting protein plays a pivotal role in several present study it was detected by polymerase chain reaction- important processes of cardiovascular homeostasis by func- restriction fragment length polymorphism assay. A 30--cycle PCR tioning as a biological sensor for biomechanical and oxidative was carried out using a 10 ml reactive solution containing (10 mM stress. However, the effects of genetic variants in the Tris-HCl, pH 9.0; 50 mM KCl; 2.5 mM MgCl2; 100 mM of each dNTP; 0.3 modulation of arterial stiffness are unknown. In this scenario, U Taq DNA Polymerase; 5 pmol of each primer; 50 ng of genomic the present study evaluated the relationship between the DNA template). PCR products were digested with 1 U of the HaeIII TXNIP rs7212 polymorphism and arterial stiffness. In the restriction enzyme and visualized by 3% agarose gel electrophor- overall sample and in the diabetic group, individuals carrying esis. Quality control was assessed by re-genotyping of 40 samples CG þ GG genotypes had higher PWV values compared with CC randomly selected and gave identical results in all tests.
    [Show full text]
  • Mondoa Drives Muscle Lipid Accumulation and Insulin Resistance
    MondoA drives muscle lipid accumulation and insulin resistance Byungyong Ahn, … , Kyoung Jae Won, Daniel P. Kelly JCI Insight. 2019. https://doi.org/10.1172/jci.insight.129119. Research In-Press Preview Metabolism Muscle biology Obesity-related insulin resistance is associated with intramyocellular lipid accumulation in skeletal muscle. We hypothesized that in contrast to current dogma, this linkage is related to an upstream mechanism that coordinately regulates both processes. We demonstrate that the muscle-enriched transcription factor MondoA is glucose/fructose responsive in human skeletal myotubes and directs the transcription of genes in cellular metabolic pathways involved in diversion of energy substrate from a catabolic fate into nutrient storage pathways including fatty acid desaturation and elongation, triacylglyeride (TAG) biosynthesis, glycogen storage, and hexosamine biosynthesis. MondoA also reduces myocyte glucose uptake by suppressing insulin signaling. Mice with muscle-specific MondoA deficiency were partially protected from insulin resistance and muscle TAG accumulation in the context of diet-induced obesity. These results identify MondoA as a nutrient-regulated transcription factor that under normal physiological conditions serves a dynamic checkpoint function to prevent excess energy substrate flux into muscle catabolic pathways when myocyte nutrient balance is positive. However, in conditions of chronic caloric excess, this mechanism becomes persistently activated leading to progressive myocyte lipid storage and insulin resistance. Find the latest version: https://jci.me/129119/pdf Revised manuscript JCI Insight 129119-INS-RG-RV-3 MondoA Drives Muscle Lipid Accumulation and Insulin Resistance Byungyong Ahn1, Shibiao Wan2, Natasha Jaiswal2, Rick B. Vega3, Donald E. Ayer4, Paul M. Titchenell2, Xianlin Han5, Kyoung Jae Won2, Daniel P.
    [Show full text]
  • Human Induced Pluripotent Stem Cell–Derived Podocytes Mature Into Vascularized Glomeruli Upon Experimental Transplantation
    BASIC RESEARCH www.jasn.org Human Induced Pluripotent Stem Cell–Derived Podocytes Mature into Vascularized Glomeruli upon Experimental Transplantation † Sazia Sharmin,* Atsuhiro Taguchi,* Yusuke Kaku,* Yasuhiro Yoshimura,* Tomoko Ohmori,* ‡ † ‡ Tetsushi Sakuma, Masashi Mukoyama, Takashi Yamamoto, Hidetake Kurihara,§ and | Ryuichi Nishinakamura* *Department of Kidney Development, Institute of Molecular Embryology and Genetics, and †Department of Nephrology, Faculty of Life Sciences, Kumamoto University, Kumamoto, Japan; ‡Department of Mathematical and Life Sciences, Graduate School of Science, Hiroshima University, Hiroshima, Japan; §Division of Anatomy, Juntendo University School of Medicine, Tokyo, Japan; and |Japan Science and Technology Agency, CREST, Kumamoto, Japan ABSTRACT Glomerular podocytes express proteins, such as nephrin, that constitute the slit diaphragm, thereby contributing to the filtration process in the kidney. Glomerular development has been analyzed mainly in mice, whereas analysis of human kidney development has been minimal because of limited access to embryonic kidneys. We previously reported the induction of three-dimensional primordial glomeruli from human induced pluripotent stem (iPS) cells. Here, using transcription activator–like effector nuclease-mediated homologous recombination, we generated human iPS cell lines that express green fluorescent protein (GFP) in the NPHS1 locus, which encodes nephrin, and we show that GFP expression facilitated accurate visualization of nephrin-positive podocyte formation in
    [Show full text]
  • Alcohol Dysregulates Mir-148A in Hepatocytes Through Foxo1
    Hepatology ORIGINAL ARTICLE Gut: first published as 10.1136/gutjnl-2017-315123 on 23 February 2018. Downloaded from Alcohol dysregulates miR-148a in hepatocytes through FoxO1, facilitating pyroptosis via TXNIP overexpression Mi Jeong Heo,1 Tae Hyun Kim,1 Jueng Soo You,2 Delia Blaya,3 Pau Sancho-Bru,3 Sang Geon Kim1 ► Additional material is ABSTRact published online only. To view, Objective Alcoholic liver disease (ALD) is a leading Significance of this study please visit the journal online cause of death among chronic liver diseases. However, (http:// dx. doi. org/ 10. 1136/ What is already known on this subject? gutjnl- 2017- 315123). its pathogenesis has not been completely established. MicroRNAs (miRNAs) are key contributors to liver ► Excessive alcohol consumption promotes 1College of Pharmacy diseases progression. This study investigated hepatocyte- hepatocyte dysfunction and death during the and Research Institute of progression of liver diseases. Pharmaceutical Sciences, Seoul abundant miRNAs dysregulated by ALD, its impact on National University, Seoul, hepatocyte injury and the underlying basis. ► A set of microRNAs (miRNAs) including miR- Republic of Korea 182, miR-155 and miR-217 showed abnormal 2 Design Alcoholic hepatitis (AH) human and animal Department of Biochemistry, liver samples and hepatocytes were used to assess increases in alcoholic liver disease (ALD). School of Medicine, Konkuk However, the downregulated miRNAs have University, Seoul, Republic of miR-148a levels. Pre-miR-148a was delivered Korea specifically to hepatocytes in vivo using lentivirus. been scarcely explored. 3Laboratory of Liver Cell Immunoblottings, luciferase reporter assays, chromatin ► MiR-148a belongs to miRNAs abundant Plasticity and Tissue Repair, immunoprecipitation and immunofluorescence assays in hepatocytes and regulates hepatocyte Institut d’Investigacions were carried out in cell models.
    [Show full text]
  • Prenatal Detection of TAR Syndrome in a Fetus with Compound Inheritance of an RBM8A SNP and a 334‑Kb Deletion: a Case Report
    MOLECULAR MEDICINE REPORTS 9: 163-165, 2014 Prenatal detection of TAR syndrome in a fetus with compound inheritance of an RBM8A SNP and a 334‑kb deletion: A case report IOANNIS PAPOULIDIS1, EIRINI OIKONOMIDOU1, SANDRO ORRU2, ELISAVET SIOMOU1, MARIA KONTODIOU1, MAKARIOS ELEFTHERIADES3, VASILIOS BACOULAS4, JUAN C. CIGUDOSA5, JAVIER SUELA5, LORETTA THOMAIDIS6 and EMMANOUIL MANOLAKOS1,2 1Laboratory of Genetics, Eurogenetica S.A., Thessaloniki 55133, Greece; 2Department of Medical Genetics, University of Cagliari, Binaghi Hospital, Cagliari I‑09126, Italy; 3Embryocare, Fetal Medicine Unit, Athens 11522; 4Fetal Medicine Centre, Athens 10674, Greece; 5NIMGenetics, Madrid 28049, Spain; 6Department of Pediatrics, Aglaia Kyriakou Children's Hospital, University of Athens, Athens 11527, Greece Received May 30, 2013; Accepted October 16, 2013 DOI: 10.3892/mmr.2013.1788 Abstract. Thrombocytopenia-absent radius syndrome identified the presence of a minimally deleted 200‑kb region (TAR) is a rare genetic disorder that is characterized by the at chromosome band 1q21.1 in patients with TAR, but it is not absence of the radius bone in each forearm and a markedly sufficient to cause the phenotype (3,4). A study identified two reduced platelet count that results in life-threatening bleeding rare single nucleotide polymorphisms (SNPs) in the regulatory episodes (thrombocytopenia). Tar syndrome has been associ- region of the RBM8A gene that are involved in TAR syndrome ated with a deletion of a segment of 1q21.1 cytoband. The through the reduction of the expression of the RBM8A-encoded 1q21.1 deletion syndrome phenotype includes Tar and other Y14 protein (4). The first allele (rs139428292 G>A), which is features such as mental retardation, autism and microcephaly.
    [Show full text]
  • Islet-1 Is Essential for Pancreatic Β-Cell Function Benjamin N. Ediger
    Page 1 of 68 Diabetes June 20, 2014 Diabetes Islet-1 is essential for pancreatic β-cell function Benjamin N. Ediger1,5, Aiping Du1, Jingxuan Liu1, Chad S. Hunter3, Erik R. Walp1, Jonathan Schug4, Klaus H. Kaestner4, Roland Stein3, Doris A. Stoffers5* and Catherine Lee May*,1,2 1Department of Pathology and Laboratory Medicine, Children’s Hospital of Philadelphia, 2Department of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA 3Department of Molecular Physiology and Biophysics, Vanderbilt University Medical Center, Nashville, Tennessee 37232, USA 4Department of Genetics and Institute for Diabetes, Obesity and Metabolism, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA 5Department of Medicine and Institute for Diabetes, Obesity and Metabolism, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA * These authors contributed equally. Running Title: Isl-1 regulates β-cell function Address correspondence to: Catherine Lee May, Ph.D. 3615 Civic Center Blvd, Room 516E Philadelphia, PA 19104 Phone: 267-426-0116 E-mail: [email protected] And Doris A. Stoffers, M.D., Ph.D. 3400 Civic Center Boulevard, 12-124 SCTR Philadelphia, PA 19104 Phone: (215) 573-5413 E-mail: [email protected] Fax: 215-590-3709 Word Count: 4065 Number of Tables: 6 (all are supplemental) Number of Figures: 9 (3 are supplemental) Diabetes Publish Ahead of Print, published online July 15, 2014 Diabetes Page 2 of 68 Abstract Isl-1 is essential for the survival and ensuing differentiation of pancreatic endocrine progenitors. Isl-1 remains expressed in all adult pancreatic endocrine lineages; however, its specific function in the postnatal pancreas is unclear.
    [Show full text]
  • Comprehensive Genomic Characterization of Three Spatially
    Comprehensive genomic characterization of three spatially and temporally #2687W distinct tumors from different organs in a single patient exhibiting both BRCA2 and VHL germline mutations Sean Michael Boyle, Michael James Clark, Thai H. Ho1, Melissa L Stanton1, Erik P Castle1, Alexander S. Parker2, Ravi Alla, Elena Helman, Shujun Luo, Scott Kirk, Parin Sripakdeevong, Mirian Karbelashvili, Deanna M Church, Michael Snyder, John West, & Rich Chen Personalis, Inc. | 1330 O’Brien Dr, Menlo Park, CA 94025; 1Mayo Clinic, Inc. | 13400 E. Shea Blvd. Scottsdale , AZ 85259; 2Mayo Clinic, Inc. 4500 San Pablo Road Jacksonville, FL 32224 | Contact: [email protected] Patient Background — Tumors & Susceptibility Genes BRCA2, PTCH1, and TP53 Are Driving Progression of Tumor 3 (BCC) Inherited genetic mutations have been strongly associated with heightened risk for a broad range of cancer subtypes. Over the last two decades, large efforts have focused on recognizing cancer driver genes and better understanding their role in cancer progression, resulting in identification and characterization of Driver Mutations Small Variant CNV important drivers. In very rare cases, a single individual has germline mutations in more than one of these cancer driver genes. Small Variant Small Variant Allele Allele Freq Associated Common Gene Mutation To spatially and temporally profile tumor initiation in the setting of de novo germline tumor suppressor mutations, we applied next generation sequencing or CNV? Germline? Freq DNA RNA With CNV In BCC? to analyze tumors arising from three distinct tissues in a female patient affected by Von-Hippel Lindau disease. Using the ACE Extended Cancer Panel, a BRCA2 Frame Shift p.S1982fs Yes 46% 51% No <1% targeted enrichment sequencing platform including over 1,300 cancer genes and 200 miRNAs, we sequenced each neoplastic site as well as adjacent normal tissues.
    [Show full text]
  • Identification of New Risk Factors for Rolandic Epilepsy: CNV at Xp22.31
    Neurogenetics ORIGINAL ARTICLE J Med Genet: first published as 10.1136/jmedgenet-2018-105319 on 22 May 2018. Downloaded from Identification of new risk factors for rolandic epilepsy: CNV at Xp22.31 and alterations at cholinergic synapses Laura Addis,1,2 William Sproviero,1 Sanjeev V Thomas,3 Roberto H Caraballo,4 Stephen J Newhouse,5,6,7 Kumudini Gomez,8 Elaine Hughes,9 Maria Kinali,10 David McCormick,9 Siobhan Hannan,10 Silvia Cossu,11,12 Jacqueline Taylor,13 Cigdem I Akman,14 Steven M Wolf,15 David E Mandelbaum,16 Rajesh Gupta,17 Rick A van der Spek,18 Dario Pruna,12 Deb K Pal1 ► Additional material is ABSTRact speech arrest. The characteristic EEG abnormality published online only. To view Background Rolandic epilepsy (RE) is the most is blunt centrotemporal spikes (CTS) typically with please visit the journal online (http:// dx. doi. org/ 10. 1136/ common genetic childhood epilepsy, consisting of focal, frontal positivity and sleep activation. RE starts jmedgenet- 2018- 105319). nocturnal seizures and frequent neurodevelopmental at a mean of 7 years, and there is a spontaneous impairments in speech, language, literacy and attention. remission of seizures during adolescence.3 4 Neuro- For numbered affiliations see A complex genetic aetiology is presumed in most, with developmental comorbidities such as speech sound end of article. monogenic mutations in GRIN2A accounting for >5% of disorder, language impairment, reading disability, cases. migraine and attention impairment are common Correspondence to 5–7 Dr Laura Addis, Department of Objective To identify rare, causal CNV in patients with both in children with RE and their families ; Basic and Clinical Neuroscience, RE.
    [Show full text]
  • Human-Specific NOTCH-Like Genes in a Region Linked to Neurodevelopmental Disorders Affect Cortical Neurogenesis
    bioRxiv preprint doi: https://doi.org/10.1101/221226; this version posted November 17, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. Human-specific NOTCH-like genes in a region linked to neurodevelopmental disorders affect cortical neurogenesis Authors: Ian T Fiddes1,12, Gerrald A Lodewijk2,12, Meghan Mooring1, Colleen M Bosworth1, Adam D Ewing1#, Gary L Mantalas1,3, Adam M Novak1, Anouk van den Bout2, Alex Bishara4, Jimi L Rosenkrantz1,5, Ryan Lorig-Roach1, Andrew R Field1,3, Maximilian Haeussler1, Lotte Russo2, Aparna Bhaduri6, Tomasz J. Nowakowski6, Alex A. Pollen6, Max L. Dougherty7, Xander Nuttle8, Marie-Claude Addor9, Simon Zwolinski10, Sol Katzman1, Arnold Kriegstein6, Evan E. Eichler7,11, Sofie R Salama1,5,13, Frank MJ Jacobs1,2,13.14*, David Haussler1,5,13,14* Affiliations: 1 UC Santa Cruz Genomics Institute, Santa Cruz, California, United States of America, 2 University of Amsterdam, Swammerdam Institute for Life Sciences, Amsterdam, The Netherlands 3 Molecular, Cell and Developmental Biology, of California Santa Cruz, Santa Cruz, California, United States of America 4 Department of Computer Science and Department of Medicine, Division of Hematology, Stanford University, California, USA 5Howard Hughes Medical Institute, University of California Santa Cruz, Santa Cruz, California, United States of America 6The Eli and Edythe Broad
    [Show full text]
  • A Critical Role for Thioredoxin- Interacting Protein in Diabetes- Related Impairment of Angiogenesis
    Diabetes Volume 63, February 2014 675 Louise L. Dunn,1,2 Philippa J.L. Simpson,1 Hamish C. Prosser,3 Laura Lecce,1 Gloria S.C. Yuen,1,2 Andrew Buckle,1 Daniel P. Sieveking,1 Laura Z. Vanags,3 Patrick R. Lim,1 Renee W.Y. Chow,1 Yuen Ting Lam,1 Zoe Clayton,1 Shisan Bao,2 Michael J. Davies,2,4 Nadina Stadler,4 David S. Celermajer,2,5,6 Roland Stocker,7 Christina A. Bursill,3 John P. Cooke,8 and Martin K.C. Ng1,2,6 A Critical Role for Thioredoxin- Interacting Protein in Diabetes- Related Impairment of Angiogenesis Impaired angiogenesis in ischemic tissue is production to nondiabetic levels. These data PATHOPHYSIOLOGY a hallmark of diabetes. Thioredoxin-interacting implicate a critical role for TXNIP in diabetes-related protein (TXNIP) is an exquisitely glucose-sensitive impairment of ischemia-mediated angiogenesis and gene that is overexpressed in diabetes. As TXNIP identify TXNIP as a potential therapeutic target for modulates the activity of the key angiogenic the vascular complications of diabetes. cytokine vascular endothelial growth factor (VEGF), Diabetes 2014;63:675–687 | DOI: 10.2337/db13-0417 we hypothesized that hyperglycemia-induced dysregulation of TXNIP may play a role in the pathogenesis of impaired angiogenesis in diabetes. A major part of the morbidity and mortality of diabetes In the current study, we report that high glucose– arises from its vascular complications, of which impaired mediated overexpression of TXNIP induces angiogenesis is an important feature (1). Patients with a widespread impairment in endothelial cell (EC) diabetes have impaired collateral development following function and survival by reducing VEGF production vascular occlusion (2), poor wound healing, and increased and sensitivity to VEGF action, findings that are rates of peripheral limb amputation (3).
    [Show full text]