Macoma Inquinata Class: Bivalvia, Heterodonta, Euheterodonta
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National Monitoring Program for Biodiversity and Non-Indigenous Species in Egypt
UNITED NATIONS ENVIRONMENT PROGRAM MEDITERRANEAN ACTION PLAN REGIONAL ACTIVITY CENTRE FOR SPECIALLY PROTECTED AREAS National monitoring program for biodiversity and non-indigenous species in Egypt PROF. MOUSTAFA M. FOUDA April 2017 1 Study required and financed by: Regional Activity Centre for Specially Protected Areas Boulevard du Leader Yasser Arafat BP 337 1080 Tunis Cedex – Tunisie Responsible of the study: Mehdi Aissi, EcApMEDII Programme officer In charge of the study: Prof. Moustafa M. Fouda Mr. Mohamed Said Abdelwarith Mr. Mahmoud Fawzy Kamel Ministry of Environment, Egyptian Environmental Affairs Agency (EEAA) With the participation of: Name, qualification and original institution of all the participants in the study (field mission or participation of national institutions) 2 TABLE OF CONTENTS page Acknowledgements 4 Preamble 5 Chapter 1: Introduction 9 Chapter 2: Institutional and regulatory aspects 40 Chapter 3: Scientific Aspects 49 Chapter 4: Development of monitoring program 59 Chapter 5: Existing Monitoring Program in Egypt 91 1. Monitoring program for habitat mapping 103 2. Marine MAMMALS monitoring program 109 3. Marine Turtles Monitoring Program 115 4. Monitoring Program for Seabirds 118 5. Non-Indigenous Species Monitoring Program 123 Chapter 6: Implementation / Operational Plan 131 Selected References 133 Annexes 143 3 AKNOWLEGEMENTS We would like to thank RAC/ SPA and EU for providing financial and technical assistances to prepare this monitoring programme. The preparation of this programme was the result of several contacts and interviews with many stakeholders from Government, research institutions, NGOs and fishermen. The author would like to express thanks to all for their support. In addition; we would like to acknowledge all participants who attended the workshop and represented the following institutions: 1. -
Seasonal Variation in the Occurrence of Planktic Bivalve Larvae in the Schleswig-Holstein Wadden Sea
HELGOLdkNDER MEERESUNTERSUCHUNGEN Helgolander Meeresunters. 51, 23-39 {1997} Seasonal variation in the occurrence of planktic bivalve larvae in the Schleswig-Holstein Wadden Sea Andrea Pulfrich* Institut ffir Meereskunde; Dfisternbrooker Weg 20, 24105 Kiel, Germany ABSTRACT: In the late 1980s, recruitment failures of the mussel Mytilus edulis led to economic pro- blems in the mussel fishing and cultivation industries of northwestern Europe. As part of a collabo- rative study to gain a better understanding of the mechanisms affecting recruitment processes of mussels, plankton samples were collected regularly over a four-year period (t990-I993) from three stations in the Schleswig-Holstein Wadden Sea. The bivalve component of the plankton was domi- nated by the Solenidae, which was almost exclusively represented by Ensis americanus [= directus). NI. eduhs was the second most abundant species. Abundances of mussel larvae peaked 2 to 4 weeks after spawning maxima in the adult populations. Although variations in timing and amplitude of the tota~ [arvaL densities occurred, annua[ abuadances o[M. edulis larvae remained stable during the study period, and regional abundance differences were insignificant. A close relaUonsh~p was found between peaks in larval abundance and phytoplankton blooms. Differences in larval concentrations in the ebb and the flow currents were insignificant. Planktic mussel larvae measured between 200 }am and 300 ~tm, and successive cohorts were recognizable in the majority of samples. Most lar- vae were found to originate from local stocks, although imports from outside the area do occur. INTRODUCTION Successive years of failing spatfall and recruitment of the edible mussel Mytilus edu- lis L. (Bivalvia) on the northwestern European coast during the late 1980s caused sub- stantial production Losses in the mussel fishing and cultivation industries. -
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MarLIN Marine Information Network Information on the species and habitats around the coasts and sea of the British Isles Lagoon cockle (Cerastoderma glaucum) MarLIN – Marine Life Information Network Biology and Sensitivity Key Information Review Nicola White 2002-07-15 A report from: The Marine Life Information Network, Marine Biological Association of the United Kingdom. Please note. This MarESA report is a dated version of the online review. Please refer to the website for the most up-to-date version [https://www.marlin.ac.uk/species/detail/1315]. All terms and the MarESA methodology are outlined on the website (https://www.marlin.ac.uk) This review can be cited as: White, N. 2002. Cerastoderma glaucum Lagoon cockle. In Tyler-Walters H. and Hiscock K. (eds) Marine Life Information Network: Biology and Sensitivity Key Information Reviews, [on-line]. Plymouth: Marine Biological Association of the United Kingdom. DOI https://dx.doi.org/10.17031/marlinsp.1315.1 The information (TEXT ONLY) provided by the Marine Life Information Network (MarLIN) is licensed under a Creative Commons Attribution-Non-Commercial-Share Alike 2.0 UK: England & Wales License. Note that images and other media featured on this page are each governed by their own terms and conditions and they may or may not be available for reuse. Permissions beyond the scope of this license are available here. Based on a work at www.marlin.ac.uk (page left blank) Date: 2002-07-15 Lagoon cockle (Cerastoderma glaucum) - Marine Life Information Network See online review for distribution map Three Cerastoderma glaucum with siphons extended. Distribution data supplied by the Ocean Photographer: Dennis R. -
Bankia Setacea Class: Bivalvia, Heterodonta, Euheterodonta
Phylum: Mollusca Bankia setacea Class: Bivalvia, Heterodonta, Euheterodonta Order: Imparidentia, Myida The northwest or feathery shipworm Family: Pholadoidea, Teredinidae, Bankiinae Taxonomy: The original binomen for Bankia the presence of long siphons. Members of setacea was Xylotrya setacea, described by the family Teredinidae are modified for and Tryon in 1863 (Turner 1966). William Leach distiguished by a wood-boring mode of life described several molluscan genera, includ- (Sipe et al. 2000), pallets at the siphon tips ing Xylotrya, but how his descriptions were (see Plate 394C, Coan and Valentich-Scott interpreted varied. Although Menke be- 2007) and distinct anterior shell indentation. lieved Xylotrya to be a member of the Phola- They are commonly called shipworms (though didae, Gray understood it as a member of they are not worms at all!) and bore into many the Terdinidae and synonyimized it with the wooden structures. The common name ship- genus Bankia, a genus designated by the worm is based on their vermiform morphology latter author in 1842. Most authors refer to and a shell that only covers the anterior body Bankia setacea (e.g. Kozloff 1993; Sipe et (Ricketts and Calvin 1952; see images in al. 2000; Coan and Valentich-Scott 2007; Turner 1966). Betcher et al. 2012; Borges et al. 2012; Da- Body: Bizarrely modified bivalve with re- vidson and de Rivera 2012), although one duced, sub-globular body. For internal anato- recent paper sites Xylotrya setacea (Siddall my, see Fig. 1, Canadian…; Fig. 1 Betcher et et al. 2009). Two additional known syno- al. 2012. nyms exist currently, including Bankia Color: osumiensis, B. -
The Effects of Environment on Arctica Islandica Shell Formation and Architecture
Biogeosciences, 14, 1577–1591, 2017 www.biogeosciences.net/14/1577/2017/ doi:10.5194/bg-14-1577-2017 © Author(s) 2017. CC Attribution 3.0 License. The effects of environment on Arctica islandica shell formation and architecture Stefania Milano1, Gernot Nehrke2, Alan D. Wanamaker Jr.3, Irene Ballesta-Artero4,5, Thomas Brey2, and Bernd R. Schöne1 1Institute of Geosciences, University of Mainz, Joh.-J.-Becherweg 21, 55128 Mainz, Germany 2Alfred Wegener Institute for Polar and Marine Research, Am Handelshafen 12, 27570 Bremerhaven, Germany 3Department of Geological and Atmospheric Sciences, Iowa State University, Ames, Iowa 50011-3212, USA 4Royal Netherlands Institute for Sea Research and Utrecht University, P.O. Box 59, 1790 AB Den Burg, Texel, the Netherlands 5Department of Animal Ecology, VU University Amsterdam, Amsterdam, the Netherlands Correspondence to: Stefania Milano ([email protected]) Received: 27 October 2016 – Discussion started: 7 December 2016 Revised: 1 March 2017 – Accepted: 4 March 2017 – Published: 27 March 2017 Abstract. Mollusks record valuable information in their hard tribution, and (2) scanning electron microscopy (SEM) was parts that reflect ambient environmental conditions. For this used to detect changes in microstructural organization. Our reason, shells can serve as excellent archives to reconstruct results indicate that A. islandica microstructure is not sen- past climate and environmental variability. However, animal sitive to changes in the food source and, likely, shell pig- physiology and biomineralization, which are often poorly un- ment are not altered by diet. However, seawater temperature derstood, can make the decoding of environmental signals had a statistically significant effect on the orientation of the a challenging task. -
Mitochondrial Genomes of the Baltic Clam Macoma Balthica (Bivalvia
Saunier et al. BMC Evolutionary Biology ( DOI 10.1186/s12862-014-0259-z RESEARCH ARTICLE Open Access Mitochondrial genomes of the Baltic clam Macoma balthica (Bivalvia: Tellinidae): setting the stage for studying mito-nuclear incompatibilities Alice Saunier1*, Pascale Garcia1, Vanessa Becquet1, Nathalie Marsaud2, Frédéric Escudié2 and Eric Pante1* Abstract Background: Allopatric divergence across lineages can lead to post-zygotic reproductive isolation upon secondary contact and disrupt coevolution between mitochondrial and nuclear genomes, promoting emergence of genetic incompatibilities. A previous FST scan on the transcriptome of the Baltic clam Macoma balthica highlighted several genes potentially involved in mito-nuclear incompatibilities (MNIs). As proteins involved in the mitochondrial oxidative phosphorylation(OXPHO)chainarepronetoMNIsandcancontributetothemaintenanceofgeneticbarriers,the mitochondrial genomes of six Ma. balthica individuals spanning two secondary contact zones were sequenced using the Illumina MiSeq plateform. Results: The mitogenome has an approximate length of 16,806 bp and encodes 13 protein-coding genes, 2 rRNAs and 22 tRNAs, all located on the same strand. atp8, a gene long reported as rare in bivalves, was detected. It encodes 42 amino acids and is putatively expressed and functional. A large unassigned region was identified between rrnS and tRNAMet and could likely correspond to the Control Region. Replacement and synonymous mutations were mapped on the inferred secondary structure of all protein-coding genes of the OXPHO chain. The atp6 and atp8 genes were characterized by background levels of replacement mutations, relative to synonymous mutations. However, most nad genes (notably nad2 and nad5) were characterized by an elevated proportion of replacement mutations. Conclusions: Six nearly complete mitochondrial genomes were successfully assembled and annotated, providing the necessary roadmap to study MNIs at OXPHO loci. -
Status of the Red Knot (Calidris Canutus Rufa) in the Western Hemisphere
Status of the Red Knot ( STATUS OF THE RED KNOT (CALIDRIS CANUTUS RUFA) IN THE WESTERN HEMISPHERE Calidris canutus rufa LAWRENCE J. NILES, HUMPHREY P. SITTERS, AMANDA D. DEY, PHILIP W. ATKINSON, ALLAN J. BAKER, KAREN A. BENNETT, ROBERTO CARMONA, KATHLEEN E. CLARK, NIGEL A. CLARK, CARMEN ESPOZ, PATRICIA M. GONZÁLEZ, BRIAN A. HARRINGTON, DANIEL E. HERNÁNDEZ, KEVIN S. KALASZ, RICHARD G. LATHROP, RICARDO N. MATUS, CLIVE D. T. MINTON, R. I. GUY MORRISON, ) Niles et al. Studies in Avian Biology No. 36 MARK K. PECK, WILLIAM PITTS, ROBERT A. ROBINSON, AND INÊS L. SERRANO Studies in Avian Biology No. 36 A Publication of the Cooper Ornithological Society STATUS OF THE RED KNOT (CALIDRIS CANUTUS RUFA) IN THE WESTERN HEMISPHERE Lawrence J. Niles, Humphrey P. Sitters, Amanda D. Dey, Philip W. Atkinson, Allan J. Baker, Karen A. Bennett, Roberto Carmona, Kathleen E. Clark, Nigel A. Clark, Carmen Espoz, Patricia M. González, Brian A. Harrington, Daniel E. Hernández, Kevin S. Kalasz, Richard G. Lathrop, Ricardo N. Matus, Clive D. T. Minton, R. I. Guy Morrison, Mark K. Peck, William Pitts, Robert A. Robinson, and Inês L. Serrano Studies in Avian Biology No. 36 A PUBLICATION OF THE COOPER ORNITHOLOGICAL SOCIETY Front cover photograph of Red Knots by Irene Hernandez Rear cover photograph of Red Knot by Lawrence J. Niles STUDIES IN AVIAN BIOLOGY Edited by Carl D. Marti 1310 East Jefferson Street Boise, ID 83712 Spanish translation by Carmen Espoz Studies in Avian Biology is a series of works too long for The Condor, published at irregular intervals by the Cooper Ornithological Society. -
Spatial Variability in Recruitment of an Infaunal Bivalve
Spatial Variability in Recruitment of an Infaunal Bivalve: Experimental Effects of Predator Exclusion on the Softshell Clam (Mya arenaria L.) along Three Tidal Estuaries in Southern Maine, USA Author(s): Brian F. Beal, Chad R. Coffin, Sara F. Randall, Clint A. Goodenow Jr., Kyle E. Pepperman, Bennett W. Ellis, Cody B. Jourdet and George C. Protopopescu Source: Journal of Shellfish Research, 37(1):1-27. Published By: National Shellfisheries Association https://doi.org/10.2983/035.037.0101 URL: http://www.bioone.org/doi/full/10.2983/035.037.0101 BioOne (www.bioone.org) is a nonprofit, online aggregation of core research in the biological, ecological, and environmental sciences. BioOne provides a sustainable online platform for over 170 journals and books published by nonprofit societies, associations, museums, institutions, and presses. Your use of this PDF, the BioOne Web site, and all posted and associated content indicates your acceptance of BioOne’s Terms of Use, available at www.bioone.org/page/terms_of_use. Usage of BioOne content is strictly limited to personal, educational, and non-commercial use. Commercial inquiries or rights and permissions requests should be directed to the individual publisher as copyright holder. BioOne sees sustainable scholarly publishing as an inherently collaborative enterprise connecting authors, nonprofit publishers, academic institutions, research libraries, and research funders in the common goal of maximizing access to critical research. Journal of Shellfish Research, Vol. 37, No. 1, 1–27, 2018. SPATIAL VARIABILITY IN RECRUITMENT OF AN INFAUNAL BIVALVE: EXPERIMENTAL EFFECTS OF PREDATOR EXCLUSION ON THE SOFTSHELL CLAM (MYA ARENARIA L.) ALONG THREE TIDAL ESTUARIES IN SOUTHERN MAINE, USA 1,2 3 2 3 BRIAN F. -
Siliqua Patula Class: Bivalvia; Heterodonta Order: Veneroida the Flat Razor Clam Family: Pharidae
Phylum: Mollusca Siliqua patula Class: Bivalvia; Heterodonta Order: Veneroida The flat razor clam Family: Pharidae Taxonomy: The familial designation of this (see Plate 397G, Coan and Valentich-Scott species has changed frequently over time. 2007). Previously in the Solenidae, current intertidal Body: (see Plate 29 Ricketts and Calvin guides include S. patula in the Pharidae (e.g., 1952; Fig 259 Kozloff 1993). Coan and Valentich-Scott 2007). The superfamily Solenacea includes infaunal soft Color: bottom dwelling bivalves and contains the two Interior: (see Fig 5, Pohlo 1963). families: Solenidae and Pharidae (= Exterior: Cultellidae, von Cosel 1993) (Remacha- Byssus: Trivino and Anadon 2006). In 1788, Dixon Gills: described S. patula from specimens collected Shell: The shell in S. patula is thin and with in Alaska (see Range) and Conrad described sharp (i.e., razor-like) edges and a thin profile the same species, under the name Solen (Fig. 4). Thin, long, fragile shell (Ricketts and nuttallii from specimens collected in the Calvin 1952), with gapes at both ends Columbia River in 1838 (Weymouth et al. (Haderlie and Abbott 1980). Shell smooth 1926). These names were later inside and out (Dixon 1789), elongate, rather synonymized, thus known synonyms for cylindrical and the length is about 2.5 times Siliqua patula include Solen nuttallii, the width. Solecurtus nuttallii. Occasionally, researchers Interior: Prominent internal vertical also indicate a subspecific epithet (e.g., rib extending from beak to margin (Haderlie Siliqua siliqua patula) or variations (e.g., and Abbott 1980). Siliqua patula var. nuttallii, based on rib Exterior: Both valves are similar and morphology, see Possible gape at both ends. -
Processing of 13C-Labelled Phytoplankton in a Fine-Grained Sandy-Shelf Sediment (North Sea): Relative Importance of Different Macrofauna Species
MARINE ECOLOGY PROGRESS SERIES Vol. 297: 61–70, 2005 Published August 1 Mar Ecol Prog Ser Processing of 13C-labelled phytoplankton in a fine-grained sandy-shelf sediment (North Sea): relative importance of different macrofauna species Anja Kamp1, 2,*, Ursula Witte1, 3 1Max Planck Institute for Marine Microbiology, Celsiusstr. 1, 28359 Bremen, Germany 2Present address: Institute for Microbiology, University of Hannover, Schneiderberg 50, 30167 Hannover, Germany 3Present address: Oceanlab, University of Aberdeen, Newburgh, Aberdeen AB41 6AA, UK ABSTRACT: On-board and in situ experiments with 13C-labelled diatoms were carried out to inves- tigate the processing of algal carbon by the macrofauna community of a fine sandy-shelf site in the southern German Bight (North Sea). The time series (12, 30, 32 and 132 h incubations) was supple- mented by additional laboratory experiments on the role of the dominant macrofauna organism, the bivalve Fabulina fabula (Bivalvia: Tellinidae), for particulate organic matter subduction to deeper sediment layers. The specific uptake of algal 13C by macrofauna organisms was visible after 12 h and constantly increased during the incubation periods. F. fabula, a facultative (surface) deposit- and suspension-feeder, Lanice conchilega (Polychaeta: Terebellidae), a suspension-feeder and the (sur- face) deposit-feeder Echinocardium cordatum (Echinodermata: Spatangidae) were responsible for the majority of macrofaunal carbon processing. Predatory macrofauna organisms like Nephtys spp. (Polychaeta: Nephtyidae) also quickly became labelled. The rapid subduction of fresh organic matter by F. fabula down to ca. 4 to 7 cm sediment depth could be demonstrated, and it is suggested that entrainment by macrofauna in this fine-grained sand is much more efficient than advective transport. -
OREGON ESTUARINE INVERTEBRATES an Illustrated Guide to the Common and Important Invertebrate Animals
OREGON ESTUARINE INVERTEBRATES An Illustrated Guide to the Common and Important Invertebrate Animals By Paul Rudy, Jr. Lynn Hay Rudy Oregon Institute of Marine Biology University of Oregon Charleston, Oregon 97420 Contract No. 79-111 Project Officer Jay F. Watson U.S. Fish and Wildlife Service 500 N.E. Multnomah Street Portland, Oregon 97232 Performed for National Coastal Ecosystems Team Office of Biological Services Fish and Wildlife Service U.S. Department of Interior Washington, D.C. 20240 Table of Contents Introduction CNIDARIA Hydrozoa Aequorea aequorea ................................................................ 6 Obelia longissima .................................................................. 8 Polyorchis penicillatus 10 Tubularia crocea ................................................................. 12 Anthozoa Anthopleura artemisia ................................. 14 Anthopleura elegantissima .................................................. 16 Haliplanella luciae .................................................................. 18 Nematostella vectensis ......................................................... 20 Metridium senile .................................................................... 22 NEMERTEA Amphiporus imparispinosus ................................................ 24 Carinoma mutabilis ................................................................ 26 Cerebratulus californiensis .................................................. 28 Lineus ruber ......................................................................... -
Outer Ards Modiolus Modiolus Report
R Assessment of Outer Ards Modiolus modiolus biogenic reefs against Special Area of Conservation (SAC) criteria JULY 2016 A report from the Fisheries and Aquatic Ecosystems Branch, Agri-food and Biosciences Institute to The Department of Agriculture, Environment and Rural Affairs (Northern Ireland) Document version control: Version Issue date Modifier Note Issued to and date 1.0 31/03/2016 AFBI-AC First draft for review DAERA & MS: 31/03/2016 1.1 19/05/2016 AFBI-AC Second draft for review DAERA & MS: 19/05/2016 1.2 19/07/2016 AFBI-AC Final draft for sign off following MS: 19/07/2016 receipt of comments 22/06/2016 1.3 19/07/2016 AFBI-AC Final version DAERA: 20/07/2016 Further information Dr. Annika Clements Seabed Habitat Mapping Project Leader Fisheries & Aquatic Ecosystems Branch Newforge Lane Belfast BT9 5PX Tel: +44(0)2890255153 Email: [email protected] DAERA Client Officer Joe Breen DAERA, Marine Conservation and Reporting Team Marine & Fisheries Division Portrush Coastal Zone 8 Bath Road PORTRUSH BT56 8AP Tel: +44(0)2870823600 (ext31) Email: [email protected] The GIS project “Outer_Ards_Modiolus_2016.mxd” should be available for use in conjunction with this report. Recommended citation: AFBI, 2016. Special Area of Conservation Designation Assessment of Outer Ards Modiolus modiolus Biogenic Reef. Report to the Department of Agriculture, Environment and Rural Affairs, Northern Ireland. Acknowledgements The author wishes to thank Adele Boyd and Matthew Service (AFBI) for data provision, James McArdle (AFBI), Katie Lilley (Ulster University placement student with AFBI) and Clara Alvarez Alonso (DAERA) and the master and crew of the R.V.