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PDF Output of CLIC (Clustering by Inferred Co-Expression)

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PDF Output of CLIC (Clustering by Inferred Co-Expression) PDF Output of CLIC (clustering by inferred co-expression) Dataset: Num of genes in input gene set: 5 Total number of genes: 16493 CLIC PDF output has three sections: 1) Overview of Co-Expression Modules (CEMs) Heatmap shows pairwise correlations between all genes in the input query gene set. Red lines shows the partition of input genes into CEMs, ordered by CEM strength. Each row shows one gene, and the brightness of squares indicates its correlations with other genes. Gene symbols are shown at left side and on the top of the heatmap. 2) Details of each CEM and its expansion CEM+ Top panel shows the posterior selection probability (dataset weights) for top GEO series datasets. Bottom panel shows the CEM genes (blue rows) as well as expanded CEM+ genes (green rows). Each column is one GEO series dataset, sorted by their posterior probability of being selected. The brightness of squares indicates the gene's correlations with CEM genes in the corresponding dataset. CEM+ includes genes that co-express with CEM genes in high-weight datasets, measured by LLR score. 3) Details of each GEO series dataset and its expression profile: Top panel shows the detailed information (e.g. title, summary) for the GEO series dataset. Bottom panel shows the background distribution and the expression profile for CEM genes in this dataset. Overview of Co-Expression Modules (CEMs) with Dataset Weighting Scale of average Pearson correlations Num of Genes in Query Geneset: 5. Num of CEMs: 1. 0.0 0.2 0.4 0.6 0.8 1.0 Srp9 Srp19 Srp68 Srp72 Srp54b Srp9 Srp19 Srp68 CEM 1 (59 datasets) Srp72 Srp54b D17Wsu104e Symbol Num ofCEMGenes:5.Predicted248.SelectedDatasets:59.Strength:0.4 CEM 1,Geneset"[G]signalrecognitionparticle,endoplasmicreticulumtargeting",Page1 Ppapdc1b Tmem248 Tmem39a Cdk5rap3 Gorasp2 Slc35b1 Slc39a7 Fam98a Krtcap2 Clptm1l Morf4l2 Sec61b Sec23b Mrps12 Gmppb Sec11a Srp54b Dpagt1 Zfp330 Tmed9 Copg1 Lrrc59 Tram1 Eif2s2 Spcs3 Spcs2 Sec13 Tssc4 Hdlbp Ddost Srp72 Srp68 Srp19 Serp1 Trabd Nme6 Srprb Surf4 Ufm1 Cope Uba5 Yipf5 Manf Nars Srp9 Ssr2 Ssr1 Ssr3 Srm 0.0 1.0 GSE39916 [6] GSE48935 [12] GSE4142 [14] Only showingfirst200datasets-Seetxtoutputforfulldetails. GSE48932 [12] GSE29929 [14] GSE12693 [6] GSE21041 [6] GSE38031 [8] GSE27038 [12] GSE17509 [57] GSE35825 [9] GSE54678 [6] GSE17184 [12] GSE31638 [15] GSE8682 [8] GSE30861 [35] GSE51108 [6] GSE12881 [6] GSE24031 [18] GSE21491 [9] GSE31313 [22] GSE15871 [18] GSE13443 [27] GSE38138 [20] GSE14753 [6] GSE42473 [15] GSE13948 [21] GSE9249 [28] GSE24813 [10] GSE38136 [24] GSE43899 [12] GSE25088 [24] GSE22125 [6] GSE13693 [9] GSE13692 [8] GSE45051 [18] GSE28621 [21] GSE21272 [44] GSE3313 [24] GSE25140 [16] GSE18135 [18] GSE34423 [40] GSE44356 [18] GSE16691 [12] GSE27019 [6] GSE29241 [6] GSE9954 [70] GSE20391 [11] GSE31086 [6] GSE17925 [12] GSE12389 [8] GSE7348 [6] GSE11494 [16] GSE57425 [6] GSE20954 [14] GSE46150 [8] GSE22418 [8] GSE28895 [6] GSE5861 [6] GSE4734 [61] GSE38880 [12] GSE9013 [12] GSE19732 [20] GSE29262 [12] GSE35593 [6] GSE24207 [73] GSE34729 [6] GSE24078 [6] GSE46869 [6] GSE29048 [8] GSE33726 [48] GSE11680 [10] GSE9717 [6] GSE53951 [10] GSE28333 [6] GSE22774 [6] GSE30160 [6] GSE3889 [20] GSE7275 [8] GSE18858 [242] GSE7050 [18] GSE18500 [35] GSE3501 [6] GSE13963 [15] GSE45618 [6] GSE53590 [8] GSE2197 [6] GSE19517 [6] GSE27972 [6] GSE48204 [6] GSE35226 [12] GSE34552 [10] GSE38141 [18] GSE26695 [20] GSE34126 [19] GSE34961 [9] GSE8322 [12] GSE25645 [17] GSE4288 [36] GSE44101 [6] GSE11684 [16] GSE9913 [9] GSE34959 [10] GSE13590 [12] GSE17649 [36] GSE10525 [18] GSE2019 [12] GSE23040 [6] GSE5959 [6] GSE55809 [8] GSE38574 [32] GSE1435 [27] GSE12073 [12] GSE18745 [6] GSE37431 [6] GSE56492 [12] GSE32986 [18] GSE56162 [18] GSE25636 [8] GSE40230 [15] GSE46871 [6] GSE45820 [6] GSE9878 [6] GSE17373 [24] GSE18907 [12] GSE24437 [6] GSE51483 [45] GSE39355 [7] GSE7685 [12] GSE3583 [9] GSE52597 [7] GSE39375 [10] GSE32103 [6] GSE17322 [6] GSE13874 [14] GSE6837 [8] GSE14344 [6] GSE40655 [6] GSE55607 [18] GSE42238 [9] GSE6675 [8] GSE35805 [8] GSE9711 [6] GSE43620 [8] GSE39897 [36] GSE36437 [6] GSE55028 [6] GSE32624 [6] GSE10202 [8] GSE28887 [12] GSE36378 [20] GSE36665 [6] GSE9566 [38] GSE14007 [8] CEM+ CEM GSE55003 [12] GSE7759 [112] GSE4718 [6] GSE34839 [6] GSE19272 [30] GSE31150 [6] 0.0 GSE18115 [8] GSE24789 [9] GSE20426 [35] Scale ofaveragePearsoncorrelations GSE35436 [6] GSE11147 [6] GSE5425 [6] GSE7838 [9] GSE35543 [6] GSE47196 [6] 0.2 GSE12748 [7] GSE13033 [6] GSE18771 [6] GSE30863 [20] GSE10478 [6] GSE56777 [8] GSE7503 [6] GSE30488 [52] GSE35332 [12] 0.4 GSE55733 [24] GSE40773 [10] GSE32681 [61] GSE9804 [9] GSE38304 [8] GSE11572 [12] GSE30957 [16] GSE10162 [6] GSE47719 [6] 0.6 GSE18148 [6] GSE20944 [18] GSE21836 [8] GSE7430 [12] GSE30012 [6] GSE15580 [14] GSE33156 [18] GSE37546 [20] GSE37676 [6] 0.8 GSE8312 [6] GSE50603 [12] GSE32277 [33] GSE28408 [6] Score 37.95 39.24 39.57 40.40 40.42 40.96 42.44 43.89 44.57 45.47 45.73 46.03 46.59 47.65 47.94 50.01 50.60 51.42 51.81 51.93 52.42 52.81 52.95 53.38 56.64 56.79 58.05 58.07 58.29 59.00 60.74 62.39 66.25 67.10 68.23 68.29 69.44 69.46 70.01 70.93 70.96 71.10 72.15 73.07 79.29 1.0 Notes Symbol Num ofCEMGenes:5.Predicted248.SelectedDatasets:59.Strength:0.4 CEM 1,Geneset"[G]signalrecognitionparticle,endoplasmicreticulumtargeting",Page2 Mrps18b Txndc11 Sec61a1 Nr2c2ap Dnajb11 Armcx3 Nudcd1 Hspa13 Sec22b Sec24d Magoh Creld2 Copb2 Hspa5 Sdf2l1 Cks1b Eif2b4 Ddx49 Sec63 Tasp1 Jagn1 Mettl1 Abcf3 Sar1a Pycr2 Pgm3 Pdia6 Txnl1 Mogs Prrc1 Copa P4hb Deb1 Dad1 Eif3b Nans Vimp Nfxl1 Uso1 Eif3g Yrdc Bet1 Elp5 Elp3 Lars Tars Ift20 Arf4 Ufl1 Tfg 0.0 1.0 GSE39916 [6] GSE48935 [12] GSE4142 [14] Only showingfirst200datasets-Seetxtoutputforfulldetails. GSE48932 [12] GSE29929 [14] GSE12693 [6] GSE21041 [6] GSE38031 [8] GSE27038 [12] GSE17509 [57] GSE35825 [9] GSE54678 [6] GSE17184 [12] GSE31638 [15] GSE8682 [8] GSE30861 [35] GSE51108 [6] GSE12881 [6] GSE24031 [18] GSE21491 [9] GSE31313 [22] GSE15871 [18] GSE13443 [27] GSE38138 [20] GSE14753 [6] GSE42473 [15] GSE13948 [21] GSE9249 [28] GSE24813 [10] GSE38136 [24] GSE43899 [12] GSE25088 [24] GSE22125 [6] GSE13693 [9] GSE13692 [8] GSE45051 [18] GSE28621 [21] GSE21272 [44] GSE3313 [24] GSE25140 [16] GSE18135 [18] GSE34423 [40] GSE44356 [18] GSE16691 [12] GSE27019 [6] GSE29241 [6] GSE9954 [70] GSE20391 [11] GSE31086 [6] GSE17925 [12] GSE12389 [8] GSE7348 [6] GSE11494 [16] GSE57425 [6] GSE20954 [14] GSE46150 [8] GSE22418 [8] GSE28895 [6] GSE5861 [6] GSE4734 [61] GSE38880 [12] GSE9013 [12] GSE19732 [20] GSE29262 [12] GSE35593 [6] GSE24207 [73] GSE34729 [6] GSE24078 [6] GSE46869 [6] GSE29048 [8] GSE33726 [48] GSE11680 [10] GSE9717 [6] GSE53951 [10] GSE28333 [6] GSE22774 [6] GSE30160 [6] GSE3889 [20] GSE7275 [8] GSE18858 [242] GSE7050 [18] GSE18500 [35] GSE3501 [6] GSE13963 [15] GSE45618 [6] GSE53590 [8] GSE2197 [6] GSE19517 [6] GSE27972 [6] GSE48204 [6] GSE35226 [12] GSE34552 [10] GSE38141 [18] GSE26695 [20] GSE34126 [19] GSE34961 [9] GSE8322 [12] GSE25645 [17] GSE4288 [36] GSE44101 [6] GSE11684 [16] GSE9913 [9] GSE34959 [10] GSE13590 [12] GSE17649 [36] GSE10525 [18] GSE2019 [12] GSE23040 [6] GSE5959 [6] GSE55809 [8] GSE38574 [32] GSE1435 [27] GSE12073 [12] GSE18745 [6] GSE37431 [6] GSE56492 [12] GSE32986 [18] GSE56162 [18] GSE25636 [8] GSE40230 [15] GSE46871 [6] GSE45820 [6] GSE9878 [6] GSE17373 [24] GSE18907 [12] GSE24437 [6] GSE51483 [45] GSE39355 [7] GSE7685 [12] GSE3583 [9] GSE52597 [7] GSE39375 [10] GSE32103 [6] GSE17322 [6] GSE13874 [14] GSE6837 [8] GSE14344 [6] GSE40655 [6] GSE55607 [18] GSE42238 [9] GSE6675 [8] GSE35805 [8] GSE9711 [6] GSE43620 [8] GSE39897 [36] GSE36437 [6] GSE55028 [6] GSE32624 [6] GSE10202 [8] GSE28887 [12] GSE36378 [20] GSE36665 [6] GSE9566 [38] GSE14007 [8] CEM+ CEM GSE55003 [12] GSE7759 [112] GSE4718 [6] GSE34839 [6] GSE19272 [30] GSE31150 [6] 0.0 GSE18115 [8] GSE24789 [9] GSE20426 [35] Scale ofaveragePearsoncorrelations GSE35436 [6] GSE11147 [6] GSE5425 [6] GSE7838 [9] GSE35543 [6] GSE47196 [6] 0.2 GSE12748 [7] GSE13033 [6] GSE18771 [6] GSE30863 [20] GSE10478 [6] GSE56777 [8] GSE7503 [6] GSE30488 [52] GSE35332 [12] 0.4 GSE55733 [24] GSE40773 [10] GSE32681 [61] GSE9804 [9] GSE38304 [8] GSE11572 [12] GSE30957 [16] GSE10162 [6] GSE47719 [6] 0.6 GSE18148 [6] GSE20944 [18] GSE21836 [8] GSE7430 [12] GSE30012 [6] GSE15580 [14] GSE33156 [18] GSE37546 [20] GSE37676 [6] 0.8 GSE8312 [6] GSE50603 [12] GSE32277 [33] GSE28408 [6] Score 25.21 25.21 25.26 25.51 26.95 27.04 27.13 27.56 27.72 27.73 27.80 27.84 28.01 28.12 28.21 28.31 28.76 29.27 29.58 29.59 30.41 30.71 30.71 30.74 31.16 31.46 31.74 32.88 32.95 32.99 33.02 33.25 33.33 33.42 33.67 34.04 34.21 34.55 34.92 35.02 35.11 35.34 35.42 35.84 35.84 36.70 36.97 37.55 37.55 37.63 1.0 Notes Symbol Num ofCEMGenes:5.Predicted248.SelectedDatasets:59.Strength:0.4 CEM 1,Geneset"[G]signalrecognitionparticle,endoplasmicreticulumtargeting",Page3 Hnrnpab Mmadhc Sec23ip Arfgap1 Slc35e1 Slc30a5 Ube2g2 Exosc4 Txndc5 Cnot11 Tmed3 Copb1 Polr2c Hook1 Wdr74 Aimp1 Rexo2 Ddx56 Dtwd1 Gosr2 Arfip2 Magt1 Gmps Arcn1 Phf5a Hcfc2 Pold2 Dus1l Stx18 Osbp Atf6b Stt3a Pno1 Snd1 Ddx1 Eif3d Hax1 Drg2 Rars Gale Ssr4 Yars Calu Ppib Bysl Zfp9 Lig3 Nifk H13 Vcp 0.0 1.0 GSE39916 [6] GSE48935 [12] GSE4142 [14] Only showingfirst200datasets-Seetxtoutputforfulldetails. GSE48932 [12] GSE29929 [14] GSE12693 [6] GSE21041 [6] GSE38031 [8] GSE27038 [12] GSE17509 [57] GSE35825 [9] GSE54678 [6] GSE17184 [12] GSE31638 [15] GSE8682 [8] GSE30861 [35] GSE51108 [6] GSE12881 [6] GSE24031 [18] GSE21491 [9] GSE31313 [22] GSE15871 [18] GSE13443 [27] GSE38138 [20] GSE14753 [6] GSE42473 [15] GSE13948 [21] GSE9249 [28] GSE24813
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