Nucleotides Lymphocytes by Purine and Pyrimidine Proliferation, And
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Nucleotide Degradation
Nucleotide Degradation Nucleotide Degradation The Digestion Pathway • Ingestion of food always includes nucleic acids. • As you know from BI 421, the low pH of the stomach does not affect the polymer. • In the duodenum, zymogens are converted to nucleases and the nucleotides are converted to nucleosides by non-specific phosphatases or nucleotidases. nucleases • Only the non-ionic nucleosides are taken & phospho- diesterases up in the villi of the small intestine. Duodenum Non-specific phosphatases • In the cell, the first step is the release of nucleosides) the ribose sugar, most effectively done by a non-specific nucleoside phosphorylase to give ribose 1-phosphate (Rib1P) and the free bases. • Most ingested nucleic acids are degraded to Rib1P, purines, and pyrimidines. 1 Nucleotide Degradation: Overview Fate of Nucleic Acids: Once broken down to the nitrogenous bases they are either: Nucleotides 1. Salvaged for recycling into new nucleic acids (most cells; from internal, Pi not ingested, nucleic Nucleosides acids). Purine Nucleoside Pi aD-Rib 1-P (or Rib) 2. Oxidized (primarily in the Phosphorylase & intestine and liver) by first aD-dRib 1-P (or dRib) converting to nucleosides, Bases then to –Uric Acid (purines) –Acetyl-CoA & Purine & Pyrimidine Oxidation succinyl-CoA Salvage Pathway (pyrimidines) The Salvage Pathways are in competition with the de novo biosynthetic pathways, and are both ANABOLISM Nucleotide Degradation Catabolism of Purines Nucleotides: Nucleosides: Bases: 1. Dephosphorylation (via 5’-nucleotidase) 2. Deamination and hydrolysis of ribose lead to production of xanthine. 3. Hypoxanthine and xanthine are then oxidized into uric acid by xanthine oxidase. Spiders and other arachnids lack xanthine oxidase. -
In Vivo Kinetics of Thymidylate Synthetase Inhibition in 5-Fluorouracil- Sensitive and -Resistant Murine Colon Adenocarcinomas1
[CANCER RESEARCH 42, 450-456, February 1982) 0008-5472/82/0042-OOOOS02.00 In Vivo Kinetics of Thymidylate Synthetase Inhibition in 5-Fluorouracil- sensitive and -resistant Murine Colon Adenocarcinomas1 C. Paul Spears, Antranik H. Shahinian, Richard G. Moran, Charles Heidelberger,2 and Thomas H. Corbett Cancer Research Laboratories, University of Southern California Comprehensive Cancer Center, Los Angeles, California 90033 1C. P. S., A. H. S., C. H.]; Childrens Hospital of Los Angeles, Los Angeles, California 9002 7 [R. G. M.I and Southern Research Institute, Birmingham, Alabama 35255 [T. H. C.] ABSTRACT is inactivated rapidly in the presence of the 5-FUra metabolite, FdUMP, and CH2FH4, by the formation of an enzyme:FdUMP: The predictive utility of several biochemical parameters of 5- CH2FH4 covalently bonded ternary complex (10, 25, 43), from fluorouracil (5-FUra) action was evaluated in four murine co- which native TS is slowly released (11, 29, 48). Ionic adenocarcinomas: 5-FUra-sensitive Tumor 38 and 5- Evidence that TS inactivation is the critical therapeutic effect FUra-resistant Tumors 07/A, 51, and 06/A. Thymidylate syn- of 5-FUra has been largely indirect, because of difficulties in thetase (TS) was determined by a tritiated 5-fluoro-2'-deoxyu- the assay of low, growth-limiting levels of TS. Recent studies ridylate (FdUMP)-binding assay. Bolus 5-FUra (80 mg/kg, i.p.) using a sensitive tritium release TS assay (42), however, have administration caused in all tumors a rapid decrease in free TS indicated correlations between 5-FUra cytotoxicity and de levels. Only Tumor 38, however, showed inhibition of TS to creases in tumor TS activity (3, 12). -
Allopurinol Sodium) for Injection 500 Mg
ALOPRIM® (allopurinol sodium) for Injection 500 mg [al'-ō-prĭm] For Intravenous Infusion Only Rx only DESCRIPTION: ALOPRIM (allopurinol sodium) for Injection is the brand name for allopurinol, a xanthine oxidase inhibitor. ALOPRIM (allopurinol sodium) for Injection is a sterile solution for intravenous infusion only. It is available in vials as the sterile lyophilized sodium salt of allopurinol equivalent to 500 mg of allopurinol. ALOPRIM (allopurinol sodium) for Injection contains no preservatives. The chemical name for allopurinol sodium is 1,5-dihydro-4H-pyrazolo[3,4-d]pyrimidin 4-one monosodium salt. It is a white amorphous mass with a molecular weight of 158.09 and molecular formula C5H3N4NaO. The structural formula is: The pKa of allopurinol sodium is 9.31. CLINICAL PHARMACOLOGY: Allopurinol acts on purine catabolism without disrupting the biosynthesis of purines. It reduces the production of uric acid by inhibiting the biochemical reactions immediately preceding its formation. The degree of this decrease is dose dependent. Allopurinol is a structural analogue of the natural purine base, hypoxanthine. It is an inhibitor of xanthine oxidase, the enzyme responsible for the conversion of hypoxanthine to xanthine and of xanthine to uric acid, the end product of purine metabolism in man. Allopurinol is metabolized to the corresponding xanthine analogue, oxypurinol (alloxanthine), which also is an inhibitor of xanthine oxidase. Reutilization of both hypoxanthine and xanthine for nucleotide and nucleic acid synthesis is markedly enhanced when their oxidations are inhibited by allopurinol and oxypurinol. This reutilization does not disrupt normal nucleic acid anabolism, however, because feedback inhibition is an integral part of purine biosynthesis. -
Mechanisms of Synthesis of Purine Nucleotides in Heart Muscle Extracts
Mechanisms of Synthesis of Purine Nucleotides in Heart Muscle Extracts David A. Goldthwait J Clin Invest. 1957;36(11):1572-1578. https://doi.org/10.1172/JCI103555. Research Article Find the latest version: https://jci.me/103555/pdf MECHANISMS OF SYNTHESIS OF PURINE NUCLEOTIDES IN HEART MUSCLE EXTRACTS1 BY DAVID A. GOLDTHWAIT2 (From the Departments of Biochemistry and Medicine, Western Reserve University, Cleveland, Ohio) (Submitted for publication February 18, 1957; accepted July 18, 1957) The key role of ATP, a purine nucleotide, in 4. Adenine or Hypoxanthine + PRPP -> AMP the conversion of chemical energy into mechanical or Inosinic Acid (IMP) + P-P. work by myocardial tissue is well established (1, The third mechanism of synthesis is through the 2). The requirement for purine nucleotides has phosphorylation of a purine nucleoside (8, 9): also been demonstrated in the multiple synthetic 5. Adenosine + ATP -, AMP + ADP. reactions which maintain all animal cells in the Several enzymatic mechanisms are known which steady state. Since the question immediately arises result in the degradation of purine nucleotides and whether the purine nucleotides are themselves in nucleosides. The deamination of adenylic acid is a steady state, in which their rates of synthesis well known (10): equal their rates of degradation, it seems reason- 6. AMP -* IMP + NH8. able to investigate first what mechanisms of syn- Non-specific phosphatases (11) as well as spe- thesis and degradation may be operative. cific 5'-nucleotidases (12) have been described At present, there are three known pathways for which result in dephosphorylation: the synthesis of purine nucleotides. The first is 7. -
Effects of Allopurinol and Oxipurinol on Purine Synthesis in Cultured Human Cells
Effects of allopurinol and oxipurinol on purine synthesis in cultured human cells William N. Kelley, James B. Wyngaarden J Clin Invest. 1970;49(3):602-609. https://doi.org/10.1172/JCI106271. Research Article In the present study we have examined the effects of allopurinol and oxipurinol on thed e novo synthesis of purines in cultured human fibroblasts. Allopurinol inhibits de novo purine synthesis in the absence of xanthine oxidase. Inhibition at lower concentrations of the drug requires the presence of hypoxanthine-guanine phosphoribosyltransferase as it does in vivo. Although this suggests that the inhibitory effect of allopurinol at least at the lower concentrations tested is a consequence of its conversion to the ribonucleotide form in human cells, the nucleotide derivative could not be demonstrated. Several possible indirect consequences of such a conversion were also sought. There was no evidence that allopurinol was further utilized in the synthesis of nucleic acids in these cultured human cells and no effect of either allopurinol or oxipurinol on the long-term survival of human cells in vitro could be demonstrated. At higher concentrations, both allopurinol and oxipurinol inhibit the early steps ofd e novo purine synthesis in the absence of either xanthine oxidase or hypoxanthine-guanine phosphoribosyltransferase. This indicates that at higher drug concentrations, inhibition is occurring by some mechanism other than those previously postulated. Find the latest version: https://jci.me/106271/pdf Effects of Allopurinol and Oxipurinol on Purine Synthesis in Cultured Human Cells WILLIAM N. KELLEY and JAMES B. WYNGAARDEN From the Division of Metabolic and Genetic Diseases, Departments of Medicine and Biochemistry, Duke University Medical Center, Durham, North Carolina 27706 A B S TR A C T In the present study we have examined the de novo synthesis of purines in many patients. -
Optimal Scheduling of Methotrexate and 5-Fluorouracil in Human Breast Cancer1
[CANCER RESEARCH 42, 2081-2086, May 1982] 0008-5472/82/0042-0000$02.00 Optimal Scheduling of Methotrexate and 5-Fluorouracil in Human Breast Cancer1 Chris Benz, Tina Tillis, Ellen Tattelman, and Ed Cadman2 Departments of Medicine and Pharmacology, Yale School of Medicine, New Haven, Connecticut 06510 ABSTRACT tually die of disseminated disease (11, 25). The use of combi nation chemotherapy in disseminated breast cancer has im We have shown previously that methotrexate pretreatment proved objective response rates over single-agent therapy by of murine leukemia and human colon carcinoma cell cultures about 40%, yet there has been no improvement in overall results in augmented intracellular accumulation of 5-fluorour- survival and no clear superiority in palliative benefit over the acil metabolites. Both of these drugs are commonly used for use of sequential single-agent therapy (9, 18). These discour the treatment of women with breast cancer; thus, sequencing aging facts reflect the brevity of response durations following of methotrexate before 5-fluorouracil was evaluated in vitro systemic chemotherapy, 7 to 11 months, and low complete using a human mammary carcinoma cell line, 47-DN. Intracel response rates of about 15% (7). Perhaps more knowledgeable lular 5-fluorouracil accumulation was maximally increased 4- scheduling of multiple drugs given in combination will improve fold in cultures pretreated with 10 /ÕMmethotrexate for 24 hr. our therapeutic impact on breast cancer; basic laboratory This enhancement of 5-fluorouracil metabolism was associated studies may be able to provide the necessary rationale for with increased intracellular levels of 5-phosphoribosyl 1-pyro- devising such synergistic combinations. -
Nucleotide Metabolism II
Nucleotide Metabolism II • Biosynthesis of deoxynucleotides • Salvage Pathway • Catabolism: Purines • Catabolism: Pyrimidines • Feedback inhibition in purine nucleotide biosynthesis CPS II • Cytosolic CPS II uses glutamine as the nitrogen donor to carbamoyl phosphate Regulation of pyrimidine synthesis •CPSII is allosterically regulated: PRPP and IMP are activators Several pyrimidines are inhibitors • Aspartate transcarbamoylase (ATCase) Important regulatory point in prokaryotes Catalyzes the first committed pathway step Allosteric regulators: CTP (-), CTP + UTP (-), ATP (+) • Regulation of pyrimidine nucleotide synthesis in E. coli Biosynthesis of deoxynucleotides • Uses diphosphates (ribo) • Ribonucleotide reducatase • 2 sub-units • R1- reduces, active and two allosteric sites (activity and specificity site) • R2- tyrosine radical carries electrons • removes 2' OH to H Ribonucleotide reductase reaction • removes 2' OH to H • Thioredoxin and NADPH used to regenerate sulfhydryl groups Thymidylate synthesis • UDP ------> dUMP • dUMP --------> dTMP • required THF • methylates uracil Regulation THF • Mammals cannot conjugate rings or synthesize PABA. • So must get in diet. • Sulfonamides effective in bacteria due to competitive inhibition of the incorporation of PABA Cancer Drugs • fluorouracil-- suicide inhibitor of Thy synthase • aminopterin • Methotrexate -- inhibits DHF reductase Salvage of Purines and Pyrimidines • During cellular metabolism or digestion, nucleic acids are degraded to heterocyclic bases • These bases can be salvaged -
Effects of Salt Stress on Adenine and Uridine Nucleotide Pools, Sugar and Acid-Soluble Phosphate in Shoots of Pepper and Safflower
Journal of Experimental Botany, Vol. 39, No. 200, pp. 301-309, March 1988 Effects of Salt Stress on Adenine and Uridine Nucleotide Pools, Sugar and Acid-Soluble Phosphate in Shoots of Pepper and Safflower R. H. NIEMAN, R. A. CLARK, D. PAP, G. OGATA AND E. V. MAAS USDA, ARS, U.S. Salinity Laboratory, Riverside, California, U.S.A. Received 7 September 1987 ABSTRACT Nieman, R. H., Clark, R. A., Pap, D., Ogata, G. and Maas, E. V. 1988. Effects of salt stress on adenine and uridine nucleotide pools, sugar and acid-soluble phosphate in shoots of pepper and safflower.—J. exp. Bot. 39: 301-309. Pepper (Capsicum annuum cv. Yolo wonder) and safflower (Carthamus tmctonus L. cv. Gila) were 3 3 grown hydroponically and subjected to a salt stress (51 mol m" NaCl plus 25-5 mol m" CaCl2). Mature photosynthetic source leaves and shoot meristematic sinks (young pepper leaves and safflower buds) were analyzed for nucleotides by high performance liquid chromatography and for hexose and acid-soluble P—pepper was still vegetative whereas safflower had switched to flower bud formation—the salt stress reduced the fresh shoot yield of pepper by nearly two-thirds and of safflower by half. It reduced the ATP pool and ATP/ADP ratio in the source leaves of both species and also in the young pepper leaves. It had little or no effect on ATP or other nucleotide pools in safflower buds. The UDPG pool was not affected in source leaves or safflower buds, but in the young pepper leaves it was reduced by half, along with UTP. -
Natural Health Products As Modulators of Adenosine and ATP
s Chemis ct try u d & Kolathuru and Yeung, Nat Prod Chem Res 2014, 2:5 o r R P e s l e a r a DOI: 10.4172/2329-6836.1000e109 r u t c h a N Natural Products Chemistry & Research ISSN: 2329-6836 Editorial Open Access Natural Health Products as Modulators of Adenosine and ATP Metabolism for Cardiovascular Protection Shyam Sundar Kolathuru and Pollen K Yeung* College of Pharmacy and Department of Medicine, Dalhousie University, Halifax, NS, Canada Introduction Adenosine Receptors and Cardiovascular Protection Adenosine is an important endogenous purine nucleoside and Adenosine is a key mediator in ischemia preconditioning which an essential component of the molecular energy generated from is an important factor responsible for cardiovascular protection [20]. adenosine 5’-triphosphate (ATP). It acts as both a precursor and Adenosine modulates its actions via membrane bound adenosine metabolite of adenine nucleotides. As every cell utilizes the energy receptors which are coupled to G-protein and subdivided into 4 generated from catabolism of ATP, adenosine is found ubiquitously in different subtypes: 1A , A2a, A2b and A3 [21-23]. Cross-talks between the body. It is also a signaling molecule in the cardiovascular system, the receptors are known to occur which self regulates and provokes a and its role for cardioprotection and cardiovascular homeostasis has specific cardiovascular response. For example activation of A1 receptor been studied for over 80 years [1-3]. Adenosine is also known as a induces vasoconstriction which counteracts the A2 mediated dilating “homeostatic metabolite in cardiac energy metabolism” [4] owing to effect on vascular tone [24]. -
Enzymes: the Biological Accelerators
Organic and Medicinal Chemistry International Journal ISSN 2474-7610 Review Article Organic & Medicinal Chem IJ Volume 2 Issue 4 - May 2017 Copyright © All rights are reserved by Ravindra K. Rawal DOI: 10.19080/OMCIJ.2016.01.555594 Enzymes: The Biological Accelerators Sundeep Kaur Manjal, Ramandeep Kaur, Rohit Bhatia and Ravindra K. Rawal* Department of Pharmaceutical Chemistry, ISF College of Pharmacy, India Submission: April 06, 2017; Published: May 26,2017 *Corresponding author: Ravindra K. Rawal, Department of Pharmaceutical Chemistry, ISF College of Pharmacy, GT Road Moga, Punjab 142001, India, Tel: ; Email: Abstract Enzymes are the macromolecular biological catalysts which tend to exhibit tremendous biological value for the human society. These are known to accelerate and catalyze the chemical reactions many times faster than ordinary. Generally, they are known to catalyze more than 5,000 types of biochemical reactions. Numerous enzymes are produced inside the human body which tend to play crucial role in the functioning of biological activities. Some of the enzymes are used commercially such as for the synthesis of antibiotics and also used for household purpose like in manufacturing of washing powder. Apart from this, enzymes serve a variety of functions inside the living organisms. Recently pro-drug approach has gained wide popularity, it is mainly utilised in the lead optimization of the drug molecule. In this review we have tried to discuss different aspects of enzymes, enzyme kinetics, enzyme inhibitors, pro-drugs and their utility with suitable examples. Keywords: Enzyme; Serine; Trypsinogen; Heme; Pro-drug Introduction function are determined by four structural features that are - the Enzymes act as catalysts for almost all of the chemical metal core, the metal binding motif, the second sphere residues reactions that occur in all living organisms [1]. -
Overview of the Synthesis of Nucleoside Phosphates and Polyphosphates 13.1.6
Overview of the Synthesis of Nucleoside UNIT 13.1 Phosphates and Polyphosphates Phosphorylated nucleosides play a domi- ity to the synthesis. Side reactions can occur, nant role in biochemistry. Primary metabolism, such as depurination of the nucleoside, phos- DNA replication and repair, RNA synthesis, phorylation of the nucleobase, as well as chemi- protein synthesis, signal transduction, polysac- cal alteration of nucleobase analogs. Due to charide biosynthesis, and enzyme regulation their intrinsic reactivity, the synthesis of phos- are just a handful of processes involving these phoanhydride bonds is also synthetically chal- molecules. Literally thousands of enzymes use lenging. Phosphate anhydrides are phosphory- these compounds as substrates and/or regula- lating reagents that are readily degraded under tors. The need to obtain such compounds in acidic conditions. Finally, purification of syn- both labeled and unlabeled forms, as well as a thetic nucleotides can be problematic. Ionic burgeoning need for analogs, has driven the reagents, starting materials, and mixtures of development of a myriad of chemical and en- regioisomers (2′-, 3′-, 5′-phosphates) can be zymatic synthetic approaches. As chemical en- particularly difficult to separate from the de- tities, few molecules possess the wide array of sired product. densely packed functionality present in phos- In spite of the many potential difficulties phorylated nucleosides. This poses a formida- associated with nucleoside phosphorylation ble challenge to the synthetic chemist, one that and polyphosphorylation, a certain amount of has not yet been fully overcome. This overview success has been achieved in these areas. Given will address some common methods (synthetic the wealth of phosphorylating reagents avail- and enzymatic) used to construct phosphory- able, simple phosphorylation of nucleosides at lated nucleosides. -
Nucleotide Sugars in Chemistry and Biology
molecules Review Nucleotide Sugars in Chemistry and Biology Satu Mikkola Department of Chemistry, University of Turku, 20014 Turku, Finland; satu.mikkola@utu.fi Academic Editor: David R. W. Hodgson Received: 15 November 2020; Accepted: 4 December 2020; Published: 6 December 2020 Abstract: Nucleotide sugars have essential roles in every living creature. They are the building blocks of the biosynthesis of carbohydrates and their conjugates. They are involved in processes that are targets for drug development, and their analogs are potential inhibitors of these processes. Drug development requires efficient methods for the synthesis of oligosaccharides and nucleotide sugar building blocks as well as of modified structures as potential inhibitors. It requires also understanding the details of biological and chemical processes as well as the reactivity and reactions under different conditions. This article addresses all these issues by giving a broad overview on nucleotide sugars in biological and chemical reactions. As the background for the topic, glycosylation reactions in mammalian and bacterial cells are briefly discussed. In the following sections, structures and biosynthetic routes for nucleotide sugars, as well as the mechanisms of action of nucleotide sugar-utilizing enzymes, are discussed. Chemical topics include the reactivity and chemical synthesis methods. Finally, the enzymatic in vitro synthesis of nucleotide sugars and the utilization of enzyme cascades in the synthesis of nucleotide sugars and oligosaccharides are briefly discussed. Keywords: nucleotide sugar; glycosylation; glycoconjugate; mechanism; reactivity; synthesis; chemoenzymatic synthesis 1. Introduction Nucleotide sugars consist of a monosaccharide and a nucleoside mono- or diphosphate moiety. The term often refers specifically to structures where the nucleotide is attached to the anomeric carbon of the sugar component.