The Origin of Point Mutations in Human Tumor Cells1 Bernard S

Total Page:16

File Type:pdf, Size:1020Kb

The Origin of Point Mutations in Human Tumor Cells1 Bernard S [CANCER RESEARCH 52. 249-253, January 15. 1992] Perspectivesin CancerResearch The Origin of Point Mutations in Human Tumor Cells1 Bernard S. Strauss2 ICRF Clare Hall Laboratories and Department of Molecular Genetics and Cell Biology, The university of Chicago, Chicago, Illinois 6063 7 The idea that point mutation is central to carcinogenesis is zling since one of the major hypotheses of the 1970s was the an old one (e.g. Ref. l). Until recently, however, specific genetic proposal that carcinogens acted to produce point mutations; changes had not been observed in tumors and a keystone of the that all, or at least the overwhelming majority, of carcinogens belief that genetic change is central to carcinogenesis was what were mutagenic; and that the production of mutations was the appeared to be a close correlation between mutagenicity and mechanism by which carcinogens acted (13). The discovery of carcinogenicity (2). The situation is almost completely reversed transforming oncogenes (14), and particularly the observation today. The class of nonmutagenic carcinogens has been shown by Barbacid et al. (15) that methylnitrosourea-induced breast to be considerable (3). On the other hand, so many genetic tumors in rats were invariably associated with G—»Atransitions changes have been observed in individual cancers that the in the ras oncogene of the tumor, appeared to fulfill one of measured mutation rates in somatic cells seem unable to ac Koch's postulates, that an etiological agent should be invariably count for their appearance. For example, single tumors may associated with the development of disease. Identity of the type contain both ras and p53 point mutations along with chromo of mutation produced in experimental tumors by methylnitro- somal changes (4). A recent contribution to this series postu sourea, i.e., G—»Atransitions,with the mutational specificity lates a hypermutability in tumors to account for the multiple observed in vitro (16, 17) lent credence to the hypothesis that mutations observed (5). However, it may be that no special chemically induced tumors resulted, in the first instance, from mechanisms are required but rather that the estimates of mu point mutation in a growth-controlling gene. It was apparent tation rate thus far reported for somatic mammalian cells and even in these investigations that additional factors were in for neutral mutations in the genome do not reflect the rates in volved, since tumors appeared in animals treated with carcino developing tumors. Such measurements most often use Luria- gen only at a particular phase in the estrus cycle (15), but the Delbruck conditions to estimate preexisting mutations. The role of mutagen appeared to be both necessary and clear. unit in which mutation is measured is the cell generation (6). The ras mutations occurred at only a limited number of Such conditions are not applicable to the situation in tumors. positions and it was possible to look for mutations at these Rather, developing tumors are similar to Escherichia coli kept positions by in situ hybridization techniques using synthetic under selective conditions as described by Shapiro (7), by Cairns oligonucleotides (18). Numerous studies of a variety of human et ai. (8), and by Hall (9) in that mutation is time rather than tumors established that ras mutations could be observed, but replication dependent (9, 10) and that it continues in the only in a portion of tumors. Mutation in ras was neither absence of cell proliferation. The mutations observed in bacteria necessary nor sufficient for all tumor development but it did result in a selective advantage, and the particular mutations occur in some tumors. The base changes involved were limited observed in tumors also appear to give the cells in which they to a few codons and their pattern differed in different types of occur a selective advantage. The mechanism by which these tumor (19). time-dependent mutations occur is unknown, but the specificity That carcinogenesis is a complex process has been under of the mutations observed in tumors implies that at least some stood for some time (see Ref. 20 for a general discussion). In are induced as a result of alterations in the DNA. It is not yet experimental systems, the separation of initiation, promotion, clear how the rate of mutation is to be expressed in quiescent and progression fits a simple hypothesis in which initiation cells held under selective conditions. corresponds to the reaction of DNA with an ultimate carcino gen resulting in a mutation which is converted into a tumor by Mutations in Human Cancer promotion and progression. The age dependence of cancer is in agreement with the hypothesis that multiple events, possibly That genomic change, broadly defined, is a part of the trans mutations, are required for the production of a tumor (21) formation of cells to a malignant phenotype is documented by although opinions differ on the precise number involved. Ac many studies establishing the presence of specific chromosomal cording to the view that malignant tumors are due to the changes in particular tumors (11). Translocations and deletions accumulation of multiple genetic changes (22), tumors would as well as aneuploidy accompany the development and progres result after the accumulation of successive (mutational) events. sion of many tumors (4). Specific translocations are character Each event is supposed to be independent. The last event would istic of some carcinogenic transformation (12). Until recently necessarily occur late and would result in a sudden burst of it was not clear that point mutations (the transitions, transver tumors in old age. Estimates of five to seven events fit the age sions, and simple frame-shifts of experimental genetics) were distribution pattern for many tumors, although for retinoblas- also a part of the carcinogenic transformation. This was puz- toma two events suffice (23). The observation of Fearon and Vogelstein (22) of an accumulation of events accompanying the Received 9/3/91; accepted 10/30/91. 1This paper was prepared during the tenure of a Fogarty Senior International development of malignancy in colon tumors fits the multiple Fellowship from the NIH at the ICRF Clare Hall Laboratories. The work from events hypothesis. the author's laboratory was supported by grants from the NIH and the Depart The oncogenes were defined by an experimental protocol ment of Energy. 2To whom requests for reprints should be addressed, at Department of which required these genes to be dominant (14). A second class Molecular Genetics and Cell Biology, The University of Chicago, 920 E. 58th of relevant genes is recessive, participates in tumorigenesis Street, Chicago, IL 60637. when mutant, and presumably protects against tumorigenesis 249 Downloaded from cancerres.aacrjournals.org on September 28, 2021. © 1992 American Association for Cancer Research. POINT MUTATIONS IN TUMORS when present in the wild type configuration, hence their descrip "generally agreed that mutation rates in mammalian cells occur with a frequency of some 10~5 to 10~6 mutations per cell tion as tumor suppressor genes (24). A wider range of mutations can be detected in such genes, since inactivation can occur by generation" (21). However, it may be that the mutation rates changes at numerous sites, whereas activation of a physiological used for calculation are the wrong rates measured under circum function requires more limited change. The discovery of the stances that are inapplicable to the situation in developing role of the inactivated retinoblastoma gene (25) and of the p53 tumors for reasons presented by Cairns (8) and by Hall (9). The gene (26) has led to a series of studies on the mutations of these mutation rates measured in experimental mammalian systems genes found in human cancers (see references below). The are for selected genes for which "classical" Luria-Delbruck investigations have been made possible by advances in the variance analysis (6) can be used to extract true mutation rates. technology of identifying mutations, particularly by the use of In particular, the rates are measured per cell generation since the polymerase chain reaction which makes determination of it is assumed that this is the appropriate time unit and that the specific mutational change possible without the necessity of mutation requires division. Selection is immediate, in that cells cloning each particular molecule (27). It is this technical devel are plated on media in which they must grow in order to be opment that has made possible the great increase in our knowl scored. [The electrophoretic variants (31) are neutral mutations edge of the mutations present in tumors. The following gener which confer no particular selective advantage.] However, as alizations can be made (a) mutations in p53 can be detected in Cairns (8) and Hall (9) point out, there is another class of tumors of a wide variety of types; (b) in general not all tumors mutations which can be detected when organisms are allowed of a particular type have p53 point mutations (as yet detected); to persist on medium which permits survival but not growth. (c) among those tumors in which p53 mutations are detected, Under these conditions mutations which permit utilization of there is likely to be a loss of heterozygosity, i.e., only the mutant a component in the medium for proliferation can be selected. alíeleofthe gene is detected (22); and (</)the base substitutions These are "normal" point mutations resulting from DNA involved differ in tumors from different sites (28). Although changes but their appearance is time, rather than generation, p53 mutations often occur in tumors, it is unlikely that they dependent. The situation in the progressing prototumor may be analogous to that of the lac or trp~ bacterium on media arise early in tumorigenesis; rather they are late events appar ently related to tumor progression (29). containing lactose as an available carbon source or lacking tryptophan.
Recommended publications
  • Structural Effects of Point Mutations in Proteins Suvethigaa Shanthirabalan, Jacques Chomilier, Mathilde Carpentier
    Structural effects of point mutations in proteins Suvethigaa Shanthirabalan, Jacques Chomilier, Mathilde Carpentier To cite this version: Suvethigaa Shanthirabalan, Jacques Chomilier, Mathilde Carpentier. Structural effects of point muta- tions in proteins. Proteins - Structure, Function and Bioinformatics, Wiley, 2018, 86 (8), pp.853-867. 10.1002/prot.25499. hal-01909365 HAL Id: hal-01909365 https://hal.sorbonne-universite.fr/hal-01909365 Submitted on 31 Oct 2018 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Structural effects of point mutations in proteins Suvethigaa Shanthirabalan1, Jacques Chomilier2, Mathilde Carpentier1,2 1. Institut Systématique Evolution Biodiversité (ISYEB), Sorbonne Université, MNHN, CNRS, EPHE, Paris, France. 2. Sorbonne Université, CNRS, MNHN, IRD, IMPMC, BiBiP, Paris, France Corresponding author: [email protected] Mail: [email protected]; [email protected]; [email protected] Abstract A structural database of eleven families of chains differing by a single amino acid substitution has been built. Another structural dataset of 5 families with identical sequences has been used for comparison. The RMSD computed after a global superimposition of the mutated protein on each native one is smaller than the RMSD calculated among proteins of identical sequences.
    [Show full text]
  • Large Accumulation of Mrna and DNA Point Modi¢Cations in a Plant
    FEBS Letters 472 (2000) 14^16 FEBS 23560 View metadata, citation and similar papers at core.ac.uk brought to you by CORE Large accumulation of mRNA and DNA point modi¢cationsprovided in by a Elsevier plant - Publisher Connector senescent tissue Maria Plaa;*, Anna Jofre¨a, Maria Martellb, Marisa Molinasa, Jordi Go¨mezb aLaboratori del Suro, Universitat de Girona, Campus Montilivi sn, E-17071 Girona, Spain bLiver Unit, Department of Medicine, Universitat Auto©noma de Barcelona, Hospital General Universitari Vall d'Hebron, E-08035 Barcelona, Spain Received 26 January 2000 Edited by Takashi Gojobori We investigated the frequency of cDNA modi¢cation in Abstract Although nucleic acids are the paradigm of genetic information conservation, they are inherently unstable molecules cork (phellem) compared to a normally growing young tissue that suffer intrinsic and environmental damage. Oxidative stress (root tip) using cork-oak (Quercus suber) as a model system. has been related to senescence and aging and, recently, it has For this purpose, we analyzed a population of Qs_hsp17 been shown that mutations accumulate at high frequency in mRNA sequences (reverse transcription PCR products form mitochondrial DNA with age. We investigated RNA and DNA position 32^401, AC AJ000691) in cork and in root tip tissue modifications in cork, a senescent plant tissue under high [6]. Cork (phellem) is an external layer of protective tissue, endogenous oxidative stress conditions. When compared to consisting of several layers of cells that deposit large amounts normally growing young tissue, cork revealed an unexpected of suberin and undergo programmed cell death. Due to phen- high frequency of point modifications in both cDNA (Pn = oxy radicals generated during suberin synthesis [7,8], cork 1/1784) and nuclear DNA (Pn = 1/1520).
    [Show full text]
  • Point Mutations Underlying NF1 and NF2 and Increased Risk of Malignancy
    Central Annals of Otolaryngology and Rhinology Mini Review *Corresponding author Andrea L.O. Hebb, MSc, PhD, RN, Maritime Lateral Skull Base Clinic, Otolaryngology, Neurosurgery and the Point Mutations Underlying NF1 Stereotactic Radiotherapy Group QEII Health Science Centre, Halifax, Canada; Email: [email protected] and NF2 and Increased Risk of Submitted: 12 February 2020 Accepted: 25 February 2020 Published: 27 February 2020 Malignancy ISSN: 2379-948X Copyright 1 2 3,4 3,4 Myles Davidson , Haupt TS , Morris DP , Shoman NM , © 2020 Davidson M, et al. 2,4 1,2,4 Walling SA , and Hebb ALO * OPEN ACCESS 1Department of Psychology, Saint Mary’s University, Canada 2Division of Neurosurgery, Dalhousie University, Canada Keywords 3 Division of Otolaryngology, Dalhousie University, Canada • Neurofibromatosis 4 Maritime Lateral Skull Base Clinic, Otolaryngology, Neurosurgery and the Stereotactic • Missense mutation Radiotherapy Group QEII Health Science Centre, Canada • Frameshift mutation • Nonsense mutation Abstract • KRAS gene • Colorectal cancer Neurofibromatosis Type-1 and Neurofibromatosis Type-2 are autosomal dominant • Acoustic neuroma tumor suppressor disorders that result from inherited or spontaneous mutations in • Vestibular schwannoma their respective genes. Neurofibromatosis Type-1 has been attributed to a non-sense • Meningioma mutation in chromosome 17 and Neurofibromatosis Type-2 a point mutation in its gene on chromosome 22. The following discussion briefly reviews point and frameshift mutations and explores the relationship between point mutations and development of malignancies in patients with Neurofibromatosis Type-1 and Neurofibromatosis Type-2. INTRODUCTION producing phenylalanine hydroxylase, the majority of which are missense mutations [4]. A point mutation is the change of one base for another in the DNA sequence.
    [Show full text]
  • Methods for Detection of Point Mutations: Performance and Quality
    Clinical Chemistry 43:7 1114–1128 (1997) Review Methods for detection of point mutations: performance and quality assessment Downloaded from https://academic.oup.com/clinchem/article/43/7/1114/5640834 by guest on 29 September 2021 Peter Nollau and Christoph Wagener*, on behalf of the IFCC Scientific Division, Committee on Molecular Biology Techniques We give an overview of current methods for the detec- 10) What kind of quality assessment can be achieved? tion of point mutations as well as small insertions and Here, different methods for the detection of point muta- deletions in clinical diagnostics. For each method, the tions and small deletions or insertions will be discussed following characteristics are specified: (a) principle, (b) on the basis of the above criteria (for simplification, we major modifications, (c) maximum fragment size that shall refer to point mutations only in the text, though in can be analyzed, (d) ratio and type of mutations that can general, small deletions or insertions are detected equally be detected, (e) minimum ratio of mutant to wild-type well by the methods described). In general, PCR is either alleles at which mutations can be detected, and (f) used for the generation of DNA fragments, or is part of detection methods. Special attention is paid to the the detection method. Screening methods for unknown possibilities of quality assessment and the potential for mutations as well as methods for the detection of known standardization and automation. mutations are included. Though DNA sequencing tech- niques will not be covered, we stress that DNA sequenc- INDEXING TERMS: alleles • electrophoresis • gene insertions ing is considered the gold standard and remains the • gene deletions • polymerase chain reaction definitive procedure for the detection of mutations so far.
    [Show full text]
  • Teacher Materials (PDF)
    The Making of the Fittest: LESSON The Birth and Death of Genes TEACHER MATERIALS THE MOLECULAR EVOLUTION OF GENE BIRTH AND DEATH OVERVIEW This advanced lesson describes how mutation is a key element in both the birth and death of genes. Students proceed through a series of presentation slides that include background information, examples, and embedded video, and animation links. Questions challenge students to synthesize information and apply what they learn regarding how genes are gained and lost through evolutionary time. KEY CONCEPTS AND LEARNING OBJECTIVES • Mutations are changes in an organism’s DNA. They occur at random. • Whether or not a mutation has an effect on an organism’s traits depends on the type of mutation and its location. • Mutations can result in both the appearance of new genes and the loss of existing genes. • One way that a new gene can arise is when a gene is duplicated and one copy (or both copies) of the gene accumulates mutations, which change the function of the gene. • One way that a gene can be lost is when one or more mutations accumulate that destroy its function. Students will be able to • analyze gene sequences and transcribe DNA into messenger RNA (mRNA); • translate mRNA into a sequence of amino acids by using a genetic code chart; and • compare wild-type and mutated DNA sequences to determine the type of mutation present. CURRICULUM CONNECTIONS Curriculum Standards NGSS (April 2013) HS-LS1-1, HS-LS3-1, HS-LS3-2, HS-LS4-2, HS-LS4-4, HS-LS4-5 HS.LS1.A, HS.LS3.A, HS.LS3.B, HS.LS4.B, HS.LS4.C Common Core
    [Show full text]
  • Genetics of Sma
    CURE SMA CARE SERIES BOOKLET A SOURCE OF INFORMATION AND SUPPORT FOR INDIVIDUALS LIVING WITH SPINAL MUSCULAR ATROPHY AND THEIR FAMILIES. GENETICS OF SMA 1 SMA AND GENETICS Spinal muscular atrophy (SMA) is often referred to by several terms, including “genetic disease,” ‘’autosomal recessive genetic disorder,” “motor-neuron disease,” or ‘’neuromuscular disease.” SMA is a genetic disease. “Genetic” means it is relating to the genes and is inherited. Genes are responsible for our traits and unique characteristics. In SMA, there is a mutation in a gene responsible for the survival motor neuron (SMN) protein, a protein that is critical to the function of the nerves that control normal muscle movements. SMA is an autosomal recessive genetic disorder. “Autosomal recessive” refers to how the disease is inherited, or passed down, from the parents to the child. In SMA, the individual who is affected by SMA inherits two copies of a non-working gene—one copy from each parent. SMA is a motor-neuron disease. “Motor-neuron” refers to the type of nerve cell that sends messages to and from muscles responsible for movement and control of the head, neck, chest, abdomen, legs, and limbs. In SMA, the motor-neurons in the spinal cord do not have enough SMN protein. As a result, these motor-neurons do not function normally and may die, resulting in muscle weakness and atrophy (shrinkage). SMA is a neuromuscular disease. A “neuromuscular disease” affects the neuromuscular system. This can include problems with the nerves that control muscles, the muscles, and the communication between the nerves and the muscles.
    [Show full text]
  • Understanding the Introduction of Genetic Variations by Random
    Understanding the Introduction of Genetic Variations by Random Mutation Lesson Overview The focus of this lesson is on mutations as a source of genetic variability and what it means to say that mutations occur randomly at a particular rate. Students will make predictions about and observe the random mutations in the genomes of Avidians. Big Ideas The basic components of the Darwinian evolutionary mechanism are variation, inheritance, natural selection and time (aka VIST). Genetic variation is produced by mutations—changes in an organism’s genome caused by random replication errors. These errors occur at a relatively constant rate within broad groups of organisms and may be expressed probabilistically in various ways (e.g. mutation rate per base pair or per genome per replication).1 Because each site in the genome is equally susceptible to replication errors, the actual number of mutations occurring during a given replication event is variable, with higher mutation rates increasing the likelihood that mutations will occur. Random mutations produce the raw materials that are shaped by non-random selection into complex adaptive features. Objectives for Student Learning Through engagement in this lesson, students will: • Learn that mutations may occur at random in a genome at various rates • Observe how random mutations introduce genotypic variability in a population • Explain what mutation rates imply about the distribution of genotypic changes • Test hypotheses via a cycle of Hypothesis, Prediction, Testing, and Evaluation. Students’ Prior Knowledge Students should have a basic understanding of probability. However, they may struggle with what is meant by a particular mutation rate. Students may think, for instance, that a 10% mutation rate means that that there will always be a 10% difference between the ancestor and offspring, instead of recognizing that each site in the genome independently has a 10% chance of changing during replication.
    [Show full text]
  • Code Cracking Mutation Practice
    Name: ___________________________________________ Date: __________________ Period: _____ Code Cracking Mutation Practice Review: Three of the most common types of mutations are: 1. POINT MUTATION (one base is substituted for another) If a point mutation changes the amino acid, it’s called a MISSENSE mutation. If a point mutation does not change the amino acid, it’s called a SILENT mutation. If a point mutation changes the amino acid to a “stop,” it’s called a NONSENSE mutation. 2. INSERTION (an extra base, or bases, is inserted) 3. DELETION (a base, or bases, is lost) Deletion and insertion may cause what’s called a FRAMESHIFT, meaning the reading frame changes. These are typically one of the most serious types of mutations. Directions: 1. Following the same procedure you followed during the decoding activity (DNA to mRNA to Amino Acid), decode the original and mutated sequences and identify them as one of the three types of mutations listed above. If it is a point mutations, include whether it is a missense, silent, or nonsense mutations. The original DNA sequence is: DNA: TGC GTG CTT AAG CGG TGT ACA CGT TGC mRNA: Amino acid: Symbol: Now decode the following mutated sequences: 2. TGC GTG CTT AAG CGA TGT ACA CGT TGC What kind of mutation is this? Do you think it will affect the protein’s function? Why? 3. TGC GTG CTT AAG CGG TGT GCA CGT TGC What kind of mutation is this? Do you think it will affect the protein’s function? Why? 4. TGC GTG CTT AAG TAG TGT ACA CGT TGC What kind of mutation is this? Do you think it will affect the protein’s function? Why? 5.
    [Show full text]
  • A Point Mutation Within Exon 5 of the WT1 Gene of a Sporadic Unilateral Wilms' Tumor Alters Gene Function1
    (CANCER RESEARCH 58. 4180-4184. September 15. 1998] A Point Mutation within Exon 5 of the WT1 Gene of a Sporadic Unilateral Wilms' Tumor Alters Gene Function1 Li-Shuang Guan, Jia-jia Liu, Yong-Hua Xu, and Zhao-Yi Wang2 Department of Medicine, Division of Growth Regulation, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, Massachusetts 02215 ¡L-S.C., Z-Y. W.¡.and Shanghai Institute of Cell Biology, Shanghai, People's Republic of China [J-j. L, Y-H. X.¡ ABSTRACT The insertion of three amino acids (+KTS) disrupts the distance between zinc fingers 3 and 4 and thus alters its DNA-binding speci The Wilms' tumor suppressor gene, nil, encodes a zinc-finger tran ficity (6, 7). The NH2 terminus of WT1 contains a proline- and scription factor, WT1, that represses transcription of a number of growth- glutamine-rich domain that exhibited transcription-regulating activity promoting genes and inhibits cell growth. The transcripts of wit undergo in transient cotransfection assays (7, 8) two alternative splicing events, giving rise to four isoforms of mRNA in constant ratios. The first alternative splice introduces an extra exon 5, Consistent with the view that WT1 functions as a tumor suppressor, which encodes 17 amino acid residues inserted between the transcription experimental evidence has demonstrated that WT1 represses tran regulatory domain and the DNA binding domain of WT1. Previously, we scription of a number of growth-related genes. These include, PDGF demonstrated that the 17-amino acid domain functioned as a transcription A-chain, insulin-like growth factor II, epidermal growth factor recep repressor when it was fused with the DNA binding domain of WT1.
    [Show full text]
  • DNA Mutation Worksheetkey
    Name: ________________________ BIO300/CMPSC300 Mutation - Spring 2016 As you know from lecture, there are several types of mutation: DELETION (a base is lost) INSERTION (an extra base is inserted) Deletion and insertion may cause what’s called a FRAMESHIFT, meaning the reading “frame” changes, changing the amino acid sequence. POINT MUTATION (one base is substituted for another) If a point mutation changes the amino acid, it’s called a MISSENSE mutation. If a point mutation does not change the amino acid, it’s called a SILENT mutation. If a point mutation changes the amino acid to a “stop,” it’s called a NONSENSE mutation. Complete the boxes below. Classify each as either Deletion, Insertion, or Substitution AND as either frameshift, missense, silent or nonsense (hint: deletion or insertion will always be frameshift). Original DNA Sequence: T A C A C C T T G G C G A C G A C T mRNA Sequence: A U G U G G A A C C G C U G C U G A Amino Acid Sequence: MET -TRP- ASN - ARG- CYS - (STOP) Mutated DNA Sequence #1: T A C A T C T T G G C G A C G A C T What’s the mRNA sequence? A U G U A G A A C C G C U G C U G A What will be the amino acid sequence? MET -(STOP) Will there likely be effects? YES What kind of mutation is this? POINT MUTATION- NONSENSE Mutated DNA Sequence #2: T A C G A C C T T G G C G A C G A C T What’s the mRNA sequence? A U G C U G G A A C C G C U G C U G A What will be the amino acid sequence? MET - LEU -GLU– PRO-LEU-LEU Will there likely be effects? YES What kind of mutation is this? INSERTION - FRAME SHIFT Mutated DNA Sequence
    [Show full text]
  • Point Mutation Specific Antibodies in B-Cell and T-Cell Lymphomas And
    diagnostics Review Point Mutation Specific Antibodies in B-Cell and T-Cell Lymphomas and Leukemias: Targeting IDH2, KRAS, BRAF and Other Biomarkers RHOA, IRF8, MYD88, ID3, NRAS, SF3B1 and EZH2 Kunwar Singh 1,*,† , Sumanth Gollapudi 2,† , Sasha Mittal 2, Corinn Small 2, Jyoti Kumar 1 and Robert S. Ohgami 2,* 1 Department of Pathology, Stanford University, Stanford, CA 94063, USA; [email protected] 2 Department of Pathology, University of California, San Francisco, CA 94143, USA; [email protected] (S.G.); [email protected] (S.M.); [email protected] (C.S.) * Correspondence: [email protected] (K.S.); [email protected] (R.S.O.); Tel.: +1-347-856-7047 (K.S.); +1-415-514-8179 (R.S.O.) † These authors contributed equally. Abstract: B-cell and T-cell lymphomas and leukemias often have distinct genetic mutations that are diagnostically defining or prognostically significant. A subset of these mutations consists of specific point mutations, which can be evaluated using genetic sequencing approaches or point mutation Citation: Singh, K.; Gollapudi, S.; specific antibodies. Here, we describe genes harboring point mutations relevant to B-cell and T-cell Mittal, S.; Small, C.; Kumar, J.; malignancies and discuss the current availability of these targeted point mutation specific antibodies. Ohgami, R.S. Point Mutation Specific We also evaluate the possibility of generating novel antibodies against known point mutations Antibodies in B-Cell and T-Cell by computationally assessing for chemical and structural features as well as epitope antigenicity Lymphomas and Leukemias: of these targets. Our results not only summarize several genetic mutations and identify existing Targeting IDH2, KRAS, BRAF and point mutation specific antibodies relevant to hematologic malignancies, but also reveal potential Other Biomarkers RHOA, IRF8, underdeveloped targets which merit further study.
    [Show full text]
  • Study Guide A
    Name ______________________________ Class___________________Date__________________ Section 1: Identifying DNA as the Genetic Material Study Guide A KEY CONCEPT DNA was identified as the genetic material through a series of experiments. VOCABULARY bacteriophage MAIN IDEA: Griffith finds a “transforming principle.” Check the appropriate boxes to indicate the results of Griffith’s experiments that are listed below. Results Experiments Mice Lived Mice Died 1. Injected mice with live R bacteria. 2. Injected mice with live S bacteria. 3. Killed S bacteria and injected them into mice. 4. Mixed killed S bacteria with R bacteria and injected them into mice. Circle the word or phrase that best completes the statement. 5. The S / R form of bacteria caused disease in the mice. 6. Griffith concluded that there must be a “transforming principle” that changed harmless bacteria into disease-causing bacteria / mice. © Houghton Mifflin Harcourt Publishing Company Holt McDougal Biology 1 From DNA to Proteins Study Guide A Section 1: Identifying DNA as the Genetic Material Name ______________________________ Class___________________Date__________________ Study Guide A continued MAIN IDEA: Avery identifies DNA as the transforming principle. 7. Avery and his team isolated Griffith’s transforming principle and performed three tests to learn if it was DNA or protein. In the table below, check the appropriate boxes to show the results of each type of test. Avery’s Question DNA Protein What type of molecule does the transforming principle contain? Are the chemical elements in the transforming principle more similar to DNA or protein? Will transformation fail to occur after adding an enzyme that destroys DNA, or after adding an enzyme that destroys protein? MAIN IDEA: Hershey and Chase confirm that DNA is the genetic material.
    [Show full text]