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Anchialine Cave Biology in the Era of Speleogenomics Jorge L
International Journal of Speleology 45 (2) 149-170 Tampa, FL (USA) May 2016 Available online at scholarcommons.usf.edu/ijs International Journal of Speleology Off icial Journal of Union Internationale de Spéléologie Life in the Underworld: Anchialine cave biology in the era of speleogenomics Jorge L. Pérez-Moreno1*, Thomas M. Iliffe2, and Heather D. Bracken-Grissom1 1Department of Biological Sciences, Florida International University, Biscayne Bay Campus, North Miami FL 33181, USA 2Department of Marine Biology, Texas A&M University at Galveston, Galveston, TX 77553, USA Abstract: Anchialine caves contain haline bodies of water with underground connections to the ocean and limited exposure to open air. Despite being found on islands and peninsular coastlines around the world, the isolation of anchialine systems has facilitated the evolution of high levels of endemism among their inhabitants. The unique characteristics of anchialine caves and of their predominantly crustacean biodiversity nominate them as particularly interesting study subjects for evolutionary biology. However, there is presently a distinct scarcity of modern molecular methods being employed in the study of anchialine cave ecosystems. The use of current and emerging molecular techniques, e.g., next-generation sequencing (NGS), bestows an exceptional opportunity to answer a variety of long-standing questions pertaining to the realms of speciation, biogeography, population genetics, and evolution, as well as the emergence of extraordinary morphological and physiological adaptations to these unique environments. The integration of NGS methodologies with traditional taxonomic and ecological methods will help elucidate the unique characteristics and evolutionary history of anchialine cave fauna, and thus the significance of their conservation in face of current and future anthropogenic threats. -
Decapod Crustacean Grooming: Functional Morphology, Adaptive Value, and Phylogenetic Significance
Decapod crustacean grooming: Functional morphology, adaptive value, and phylogenetic significance N RAYMOND T.BAUER Center for Crustacean Research, University of Southwestern Louisiana, USA ABSTRACT Grooming behavior is well developed in many decapod crustaceans. Antennular grooming by the third maxillipedes is found throughout the Decapoda. Gill cleaning mechanisms are qaite variable: chelipede brushes, setiferous epipods, epipod-setobranch systems. However, microstructure of gill cleaning setae, which are equipped with digitate scale setules, is quite conservative. General body grooming, performed by serrate setal brushes on chelipedes and/or posterior pereiopods, is best developed in decapods at a natant grade of body morphology. Brachyuran crabs exhibit less body grooming and virtually no specialized body grooming structures. It is hypothesized that the fouling pressures for body grooming are more severe in natant than in replant decapods. Epizoic fouling, particularly microbial fouling, and sediment fouling have been shown r I m ans of amputation experiments to produce severe effects on olfactory hairs, gills, and i.icubated embryos within short lime periods. Grooming has been strongly suggested as an important factor in the coevolution of a rhizocephalan parasite and its anomuran host. The behavioral organization of grooming is poorly studied; the nature of stimuli promoting grooming is not understood. Grooming characters may contribute to an understanding of certain aspects of decapod phylogeny. The occurrence of specialized antennal grooming brushes in the Stenopodidea, Caridea, and Dendrobranchiata is probably not due to convergence; alternative hypotheses are proposed to explain the distribution of this grooming character. Gill cleaning and general body grooming characters support a thalassinidean origin of the Anomura; the hypothesis of brachyuran monophyly is supported by the conservative and unique gill-cleaning method of the group. -
Multiple Colonizations Lead to Cryptic Biodiversity in an Island Ecosystem: Comparative Phylogeography of Anchialine Shrimp Species in the Ryukyu Archipelago, Japan
Reference: Biol. Bull. 225: 24–41. (September 2013) © 2013 Marine Biological Laboratory Multiple Colonizations Lead to Cryptic Biodiversity in an Island Ecosystem: Comparative Phylogeography of Anchialine Shrimp Species in the Ryukyu Archipelago, Japan DAVID A. WEESE1,* YOSHIHISA FUJITA2,3, AND SCOTT R. SANTOS1,4 1Department of Biological Sciences and Molette Biology Laboratory for Environmental and Climate Change Studies, Auburn University, 101 Life Sciences Building, Auburn, Alabama 36849; 2University Education Center, University of the Ryukyus, 1 Senbaru, Nishihara-cho, Okinawa 903-0213, Japan; 3Marine Learning Center, 2-95-101 Miyagi, Chatan-cho, Okinawa 904-0113, Japan; 4Cell and Molecular Biosciences Peak Program, Auburn University, 101 Life Sciences Building, Auburn, Alabama 36849 Abstract. Archipelagos of the Indo-West Pacific are con- results, when interpreted in the context of Pacific oceano- sidered to be among the richest in the world in biodiversity, graphic currents and geologic history of the Ryukyus, imply and phylogeographic studies generally support either the multiple colonizations of the archipelago by the three spe- center of origin or the center of accumulation hypothesis to cies, consistent with the center of accumulation hypothesis. explain this pattern. To differentiate between these compet- While this study contributes toward understanding the bio- ing hypotheses for organisms from the Indo-West Pacific diversity, ecology, and evolution of organisms in the anchialine ecosystem, defined as coastal bodies of mixoha- Ryukyus and the Indo-West Pacific, it also has potential line water fluctuating with the tides but having no direct utility in establishing conservation strategies for anchialine oceanic connections, we investigated the genetic variation, fauna of the Pacific Basin in general. -
Species at Risk on Department of Defense Installations
Species at Risk on Department of Defense Installations Revised Report and Documentation Prepared for: Department of Defense U.S. Fish and Wildlife Service Submitted by: January 2004 Species at Risk on Department of Defense Installations: Revised Report and Documentation CONTENTS 1.0 Executive Summary..........................................................................................iii 2.0 Introduction – Project Description................................................................. 1 3.0 Methods ................................................................................................................ 3 3.1 NatureServe Data................................................................................................ 3 3.2 DOD Installations............................................................................................... 5 3.3 Species at Risk .................................................................................................... 6 4.0 Results................................................................................................................... 8 4.1 Nationwide Assessment of Species at Risk on DOD Installations..................... 8 4.2 Assessment of Species at Risk by Military Service.......................................... 13 4.3 Assessment of Species at Risk on Installations ................................................ 15 5.0 Conclusion and Management Recommendations.................................... 22 6.0 Future Directions............................................................................................. -
Endemic Species of Christmas Island, Indian Ocean D.J
RECORDS OF THE WESTERN AUSTRALIAN MUSEUM 34 055–114 (2019) DOI: 10.18195/issn.0312-3162.34(2).2019.055-114 Endemic species of Christmas Island, Indian Ocean D.J. James1, P.T. Green2, W.F. Humphreys3,4 and J.C.Z. Woinarski5 1 73 Pozieres Ave, Milperra, New South Wales 2214, Australia. 2 Department of Ecology, Environment and Evolution, La Trobe University, Melbourne, Victoria 3083, Australia. 3 Western Australian Museum, Locked Bag 49, Welshpool DC, Western Australia 6986, Australia. 4 School of Biological Sciences, The University of Western Australia, 35 Stirling Highway, Crawley, Western Australia 6009, Australia. 5 NESP Threatened Species Recovery Hub, Charles Darwin University, Casuarina, Northern Territory 0909, Australia, Corresponding author: [email protected] ABSTRACT – Many oceanic islands have high levels of endemism, but also high rates of extinction, such that island species constitute a markedly disproportionate share of the world’s extinctions. One important foundation for the conservation of biodiversity on islands is an inventory of endemic species. In the absence of a comprehensive inventory, conservation effort often defaults to a focus on the better-known and more conspicuous species (typically mammals and birds). Although this component of island biota often needs such conservation attention, such focus may mean that less conspicuous endemic species (especially invertebrates) are neglected and suffer high rates of loss. In this paper, we review the available literature and online resources to compile a list of endemic species that is as comprehensive as possible for the 137 km2 oceanic Christmas Island, an Australian territory in the north-eastern Indian Ocean. -
Behavioral Responses of the Endemic Shrimp Halocaridina Rubra
Behavioral Responses of the Endemic Shrimp Halocaridina rubra (Malacostraca: Atyidae) to an Introduced Fish, Gambusia affinis (Actinopterygii: Poeciliidae) and Implications for the Trophic Structure of Hawaiian Anchialine Ponds1 Krista A. Capps,2 Caroline B. Turner,2 Michael T. Booth,2 Danica L. Lombardozzi,2 Scott H. McArt,4 David Chai,3 and Nelson G. Hairston Jr.2,5 Abstract: In the Hawaiian Islands, intentionally introduced exotic fishes have been linked to changes in native biodiversity and community composition. In 1905, the mosquito fish Gambusia affinis was introduced to control mosquitoes. Subsequently, G. affinis spread throughout the Islands and into coastal anchia- line ponds. Previous studies suggest that presence of invasive fishes in anchialine ponds may eliminate native species, including the endemic shrimp Halocaridina rubra. We examined effects of G. affinis on H. rubra populations in anchialine ponds on the Kona-Kohala coast of the island of Hawai‘i. In the presence of G. affinis, H. rubra exhibited a diel activity pattern that was not seen in fishless ponds. Shrimp in ponds with fish were active only at night. This pattern was ev- ident in anchialine ponds and in laboratory experiments. In laboratory predation experiments, G. affinis preferentially consumed smaller H. rubra, and in the field the H. rubra collected from invaded sites were larger than those from fishless ponds. Analysis of trophic position using stable isotope analyses showed that feeding of H. rubra was not significantly distinct from that of snails, assumed to feed at trophic level 2.0 on epilithic algae, but G. affinis was slightly omnivo- rous, feeding at tropic level 2.2. -
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diversity Article Integrative Taxonomy of New Zealand Stenopodidea (Crustacea: Decapoda) with New Species and Records for the Region Kareen E. Schnabel 1,* , Qi Kou 2,3 and Peng Xu 4 1 Coasts and Oceans Centre, National Institute of Water & Atmospheric Research, Private Bag 14901 Kilbirnie, Wellington 6241, New Zealand 2 Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China; [email protected] 3 College of Marine Science, University of Chinese Academy of Sciences, Beijing 100049, China 4 Key Laboratory of Marine Ecosystem Dynamics, Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou 310012, China; [email protected] * Correspondence: [email protected]; Tel.: +64-4-386-0862 Abstract: The New Zealand fauna of the crustacean infraorder Stenopodidea, the coral and sponge shrimps, is reviewed using both classical taxonomic and molecular tools. In addition to the three species so far recorded in the region, we report Spongicola goyi for the first time, and formally describe three new species of Spongicolidae. Following the morphological review and DNA sequencing of type specimens, we propose the synonymy of Spongiocaris yaldwyni with S. neocaledonensis and review a proposed broad Indo-West Pacific distribution range of Spongicoloides novaezelandiae. New records for the latter at nearly 54◦ South on the Macquarie Ridge provide the southernmost record for stenopodidean shrimp known to date. Citation: Schnabel, K.E.; Kou, Q.; Xu, Keywords: sponge shrimp; coral cleaner shrimp; taxonomy; cytochrome oxidase 1; 16S ribosomal P. Integrative Taxonomy of New RNA; association; southwest Pacific Ocean Zealand Stenopodidea (Crustacea: Decapoda) with New Species and Records for the Region. -
Index to Volume 53
Index to Volume 53 Author Index ABURTO-OROPEZA, OCTAVIo-see Sala et al. EWING, CURTIS ALLEN, MELINDA S., and GAIL M. MURAKAMI The Endemic Hawaiian Sap Beetles (Coleoptera: Liina'i Island's Arid Lowland Vegetation in Late Nitidulidae): Distribution, Ecological Shifts, and Prehistory, 88-112 Adaptation (abstract), 114-115 ARREOLA-RoBLES, JosE L.-see Sala et al. ASQUITH, ADAM-see Kido et al. ATAN, HUGO-see Osorio et al. FILARDI, CHRISTOPHER E., CATHERINE E. SMITH, ATKINSON, MARLIN J.-see Tarrant et al. ANDREW W. KRATTER, DAVID W. STEADMAN, and ATKINSON, SHANNON-See Tarrant et al. H. PRICE WEBB New Behavioral, Ecological, and Biogeographic Data BAILEy-BROCK, JULIE H. on the Avifauna of Rennell, Solomon Islands, 319 NeriIlidae of Hawai'i: Two New Records of 340 Interstitial Polychaetes, 299-304 FLETCHER, CHARLES H., III-see Harney et al. see also Brock et al. FOALE, SIMON BAILEy-BROCK, JULIE H., VERNON R. BROCK, and Local Ecological Knowledge and Biology of the Land RiCHARD E. BROCK Crab Cardisoma hirtipes (Decapoda: Gecarcinidae) Intrusion of Anchialine Species in the Marine at West Nggela, Solomon Islands, 37-49 Environment: The Appearance of an Endemic FOSTER, JAMIE S. Hawaiian Shrimp, Halocaridina rubra, on the South Lipopolysaccharide-Induced Apoptosis in the Shore ofO'ahu (Hawaiian Islands), 367-369 Symbiotic Light Organ of the Sepiolid Squid BIRKELAND, C. E.-see Green et al. Euprymna scolopes (abstract), liS BROCK, RICHARD E.-see Bailey-Brock et al. BROCK, RiCHARD, JULIE H. BAILEy-BROCK, and JOHN GARB, JESSICA E. GOODY Origins ofthe Hawaiian Crab Spider Fauna (abstract), A Case Study of Efficacy of Freshwater Immersion in 115-116 Controlling Introduction of Alien Marine Fouling GARRISON, JENNIFER Communities: The USS Missouri, 223-231 Role of Alien Tree Plantations in Native Forest BROCK, VERNON R.-see Bailey-Brock et al. -
Parts 1 to 199
LIST OF APPENDICES APPENDIX A Ground Water Quality Assessment APPENDIX B Marine Environmental Assessment; Marine Water Quality Assessment APPENDIX C Botanical Survey APPENDIX D Avifaunal and Feral Mammal Survey; Terrestrial Invertebrate Resources Survey APPENDIX E Archaeological Inventory Survey APPENDIX F Cultural Impact Assessment APPENDIX G Traffic Impact Assessment Report APPENDIX H Acoustic Study APPENDIX I Air Quality Study APPENDIX J Civil and Electrical Infrastructure Assessment APPENDIX K Market Assessment APPENDIX L Economic and Fiscal Impact Assessment APPENDIX M April 13, 2007, LUC Hearing (Docket Number A07-774) Testimony APPENDIX N Water Board of the County of Hawaii Resolution No. 08-08 MARINE ENVIRONMENTAL ASSESSMENT O’OMA BEACHSIDE VILLAGE NORTH KONA, HAWAII MARINE COMMUNITY STRUCTURE Prepared for O'oma Beachside Village LLC Prepared by Marine Research Consultants, Inc. 1039 Waakaua Pl. Honolulu, HI 96822 May 2008 I. INTRODUCTION The proposed O’oma Beachside Village is located on a 303-acre property in North Kona approximately one mile south of the Keahole Airport and seven miles north of Kailua- Kona. The property (project site) is bounded to the east by the Queen Kaahumanu Highway, on the west by the Pacific Ocean, and lies between the Natural Energy Laboratory of Hawaii Authority (NELHA) and Hawaii Ocean Science and Technology (HOST) Park to the north, and the Shores at Kohana’iki Development to the south (Figure 1). O’oma Beachside Village will be a master-planned residential community with a full range of mixed uses including housing, mixed-use commercial, preserves, parks, trails, and shoreline access. In total, there will be 950 to 1,200 homes, which will include multi-family units, “live-work” or mixed-use homes, workforce, gap and affordable homes, and single-family home lots. -
Reproduction and Development in Halocaridina Rubra Holthuis, 1963 (Crustacea: Atyidae) Clarifies Larval Ecology in the Hawaiian Anchialine Ecosystem
Reference: Biol. Bull. 229: 134–142. (October 2015) © 2015 Marine Biological Laboratory Reproduction and Development in Halocaridina rubra Holthuis, 1963 (Crustacea: Atyidae) Clarifies Larval Ecology in the Hawaiian Anchialine Ecosystem JUSTIN C. HAVIRD*,†, REBECCA C. VAUGHT, DAVID A. WEESE‡, AND SCOTT R. SANTOS Department of Biological Sciences and Molette Laboratory for Climate Change and Environmental Studies, Auburn University, 101 Rouse Life Sciences Bldg., Auburn, Alabama 36849 Abstract. Larvae in aquatic habitats often develop in and significantly higher in brackish and seawater (88% and environments different from those they inhabit as adults. 72%, respectively). Correlated with this finding, identifi- Shrimp in the Atyidae exemplify this trend, as larvae of able gills capable of ion transport did not develop until many species require salt or brackish water for develop- metamorphosis into juveniles. Thus, early life stages of ment, while adults are freshwater-adapted. An exception H. rubra are apparently excluded from surface waters, within the Atyidae family is the “anchialine clade,” which which are characterized by lower and fluctuating salini- are euryhaline as adults and endemic to habitats with sub- ties. Instead, these stages are restricted to the subterra- terranean fresh and marine water influences. Although the nean (where there is higher and more stable salinity) Hawaiian anchialine atyid Halocaridina rubra is a strong portion of Hawaii’s anchialine habitats due to their in- osmoregulator, its larvae have never been observed in na- ability to tolerate low salinities. Taken together, these ture. Moreover, larval development in anchialine species is data contribute to the understudied area of larval ecology poorly studied. Here, reproductive trends in laboratory col- in the anchialine ecosystem. -
Phylogeny and Taxonomy of the Genera Lysmata and Exhippolysmata (Crustacea: Caridea: Hippolytidae)
Zoological Journal of the Linnean Society, 2010, 160, 254–265. With 3 figures Molecular systematics of peppermint and cleaner shrimps: phylogeny and taxonomy of the genera Lysmata and Exhippolysmata (Crustacea: Caridea: Hippolytidae) J. ANTONIO BAEZA1,2,3* 1Smithsonian Tropical Research Institute, Apartado Postal 0843-03092, Balboa, Ancón, Republic of Panama 2Smithsonian Marine Station at Fort Pierce, 701 Seaway Drive, Fort Pierce, Florida 34949, USA 3Departamento de Biología Marina, Facultad de Ciencias del Mar, Universidad Católica del Norte, Larrondo 1281, Coquimbo, Chile Received 31 December 2008; accepted for publication 22 May 2009 Shrimps from the ecologically diverse genera Lysmata and Exhippolysmata are rare among marine invertebrates because they are protandric simultaneous hermaphrodites: shrimps initially mature and reproduce solely as males, and later in life become functional simultaneous hermaphrodites. Considerable progress on the reproductive ecology of members from these two genera has been achieved during the last decade. However, several outstanding issues of systematic nature remain to be addressed. Here, a molecular phylogeny of these two genera was used to examine the overall evolutionary relationship within and between species and genera, and to answer various questions related to the systematic status of several species. The present phylogenetic analysis, including 53 sequences and 26 species of Lysmata and Exhippolysmata, indicates that semiterrestrial shrimps from the genus Merguia represent the sister group to a second natural clade composed by shrimps from the genera Lysmata and Exhippolysmata. Also, the phylogenetic analysis confirmed that the genus Lysmata is paraphyletic, and includes the genus Exhippolysmata, as noted in a preliminary study. The tree partially supports the separation of species with or without a developed accessory branch into two different genera or subgenera (i.e. -
Anchialine Shrimps in the Waikolao Area Has Been Constant, Except for Increases in ‘Ōpae ‘Ula Abundance Since 1996
Anchialine Ponds Anchialine Pond Shrimps Antecaridina lauensis Calliasmata pholidota ‘Ōpae ‘ula or Halocaridina rubra Halocaridina palahemo Metabetaeus lohena Procaris hawaiana Palaemonella burnsi Vetericaris chaceoru Metabetaeus lohena Courtesy Karl Magnacca SPECIES STATUS: All Federally Listed as Candidates except Halocaridina All State Listed as Candidates except Halocaridina IUCN Red List - Not considered All Endemic except Antecaridina, Calliasmata, Metabeteus SPECIES INFORMATION: This group of species live in underground (hypogeal) environments and in anchialine ponds which have a mix of freshwater and seawater through underground connections to the sea. All of the species except A. lauensis, C. pholidota, and M. lohena are endemic to Hawaii. ‘Ōpae ‘ula reaches 1.5 centimeters (one-half inch) in length and is an herbivore that grazes on algal, bacterial, and diatom films growing on rocks and other hard substrates. They can also filter feed in mid-water and at the surface. The other species are all larger (up to five cm or two inches long) and some are predatory. M. lohena is a snapping shrimp and feeds on ‘ōpae ‘ula. C. pholidota feeds on crustaceans and polychaetes, while P. hawaiana has been seen feeding on shrimp. All have red color and reduced appendages. ‘Ōpae ‘ula carry about 12 fertilized eggs under their abdomen for a brood period of about 38 days. They reproduce one to two times per year. Lifespan of ‘ōpae ‘ula is long, up to 20 years in captivity. Less is known about the life history of the other species, but they are relatively long- lived for species in their taxa. A. lauensis and M. lohena can live six years.