CCM3/PDCD10 Heterodimerizes With
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THE JOURNAL OF BIOLOGICAL CHEMISTRY VOL. 286, NO. 28, pp. 25056–25064, July 15, 2011 © 2011 by The American Society for Biochemistry and Molecular Biology, Inc. Printed in the U.S.A. CCM3/PDCD10 Heterodimerizes with Germinal Center Kinase III (GCKIII) Proteins Using a Mechanism Analogous to CCM3 Homodimerization*ࡗ Received for publication, December 17, 2010, and in revised form, April 26, 2011 Published, JBC Papers in Press, May 11, 2011, DOI 10.1074/jbc.M110.213777 Derek F. Ceccarelli‡1, Rob C. Laister§1, Vikram Khipple Mulligan¶, Michelle J. Kean‡ʈ2, Marilyn Goudreault‡, Ian C. Scottʈ**, W. Brent Derryʈ**, Avijit Chakrabartty¶‡‡, Anne-Claude Gingras‡ʈ3, and Frank Sicheri‡ʈ4 From the ‡Centre for Systems Biology, Samuel Lunenfeld Research Institute at Mount Sinai Hospital, Toronto, Ontario M5G 1X5, the §Division of Stem Cell and Developmental Biology, Ontario Cancer Institute, Toronto, Ontario M5G 1L7, the ¶Campbell Family Institute for Cancer Research, Ontario Cancer Institute/University Health Network, Department of Biochemistry, University of Toronto, Toronto, Ontario M5G 1L7, the ʈDepartment of Molecular Genetics, University of Toronto, Toronto, Ontario M5S 1A8, the **Program in Developmental and Stem Cell Biology, The Hospital for Sick Children, Toronto, Ontario M5G 1X8, and the ‡‡Department of Medical Biophysics, University of Toronto, Toronto, Ontario M5G 1L7, Canada CCM3 mutations give rise to cerebral cavernous malforma- three distinct genes, denoted CCM1–3, that are causative for tions (CCMs) of the vasculature through a mechanism that the formation of most familial CCM lesions (1, 2). CCM3, also remains unclear. Interaction of CCM3 with the germinal center named PDCD10, is a 212 amino acid protein conserved among Downloaded from kinase III (GCKIII) subfamily of Sterile 20 protein kinases, metazoans (3, 4). Knockdown of CCM3 in zebrafish causes an MST4, STK24, and STK25, has been implicated in cardiovascu- enlarged heart phenotype (5), whereas targeted deletion of lar development in the zebrafish, raising the possibility that dys- CCM3 in the mouse results in defects of early angiogenesis and regulated GCKIII function may contribute to the etiology of early embryonic lethality, a phenotype also observed following CCM disease. Here, we show that the amino-terminal region of tissue-specific deletion in the vascular endothelium (6). A non- http://www.jbc.org/ CCM3 is necessary and sufficient to bind directly to the C-ter- cell autonomous role for CCM3 in neuroglia on the vasculature minal tail region of GCKIII proteins. This same region of CCM3 has also been uncovered in mouse recently, indicating that was shown previously to mediate homodimerization through CCMs may arise in the central nervous system by the loss of the formation of an interdigitated ␣-helical domain. Sequence CCM3 signaling in neural as well as endothelial populations (7). conservation and binding studies suggest that CCM3 may CCM3 has been detected in complex with CCM1 and CCM2 by guest on May 21, 2015 preferentially heterodimerize with GCKIII proteins through proteins, suggesting that the three proteins may share a com- a manner structurally analogous to that employed for CCM3 mon biochemical function (8–10). Yeast two-hybrid, co-im- homodimerization. munoprecipitation, and GST pulldown experiments from cell lysates demonstrated that CCM3 also readily interacts with MST4, STK24, and STK25, a grouping of protein kinases Cerebral cavernous malformations (CCMs)5 are vascular termed the germinal center kinase class III (GCKIII) family abnormalities in the brain characterized by focal dilations of (10–13). CCM3 and the GCKIII proteins have also been cranial vasculature that can progress to hemorrhages and detected as part of a large multiprotein complex termed STRI- stroke (OMIM ID 116860). Mutations have been identified in PAK (striatin-interacting phosphatase and kinase; see Refs. 14, 15). The knockdown of GCKIII proteins in zebrafish gives rise to the same cardiovascular defects as CCM3 knockdown, sug- * This work was supported in part by Canadian Institutes of Health Research gesting the CCM3-GCKIII protein interaction is important for Grants MOP-36399 (to F. S.) and MOP-84314 (to A.-C. G.). 6 ࡗ This article was selected as a Paper of the Week. proper CCM3 function (5). 1 Both authors contributed equally to this work. The GCKIII proteins (STK24, STK25, and MST4) are mem- 2 Supported by the Canadian Institutes of Health Research through a Banting bers of the larger Sterile 20 kinase family and are characterized and Best Canada graduate scholarship. 3 Canada Research chair in Functional Proteomics and the Lea Reichmann by highly conserved catalytic domains and a 100–120 residue chair in Cancer Proteomics. To whom correspondence may be addressed: carboxyl-terminal tail, whose function is not currently known. Samuel Lunenfeld Research Institute at Mount Sinai Hospital, 600 Univer- The closely related GCKII proteins MST1 and MST2 possess sity Ave., Toronto, ON M5G1X5, Canada. Tel.: 416-586-5027; Fax: 416-586- 8869; E-mail: [email protected]. completely distinct C-terminal tails that mediate homotypic 4 Canada Research chair in Structural Principles of Signal Transduction. To and heterotypic interactions (16), raising the possibility that an whom correspondence may be addressed: Samuel Lunenfeld Research analogous function might be served by the tail region of GCKIII Institute at Mount Sinai Hospital, 600 University Ave., Toronto, ON M5G1X5, Canada. Tel.: 416-586-8471; Fax: 416-586-8869; E-mail: sicheri@ proteins, albeit through an unrelated structural mechanism. lunenfeld.ca. Crystal structures of the CCM3 protein revealed an architec- 5 The abbreviations used are: CCM, cerebral cavernous malformation; GCKIII, ture consisting of two distinct structural domains (17, 18). The germinal center kinase group III; STRIPAK, striatin-interacting phosphatase N-terminal helical domain of CCM3 mediates homodimeriza- and kinase; TEV, tobacco etch virus; SEC-MALS, size exclusion chromatog- raphy-multiangle light scattering; FAT, focal adhesion targeting; PP4C, cat- alytic subunit of the serine/threonine protein phosphatase 4; mAU, milli absorbance units. 6 B. Yoruk, B. S. Gillers, N. C. Chi, and Ian C. Scott, submitted for publication. 25056 JOURNAL OF BIOLOGICAL CHEMISTRY VOLUME 286•NUMBER 28•JULY 15, 2011 CCM3 Interacts Directly with GCKIII Proteins tion. The C-terminal four-helix bundle, termed the focal adhe- S-75 size exclusion column (GE Healthcare) in 20 mM HEPES, sion targeting (FAT) homology domain (17), functions as a lin- pH 7.5, 100 mM NaCl, and -mercaptoethanol. Fractions con- ear peptide binding module that mediates direct interactions taining purified protein were concentrated, flash frozen, and with CCM2, paxillin, and the striatin component of STRIPAK stored at Ϫ80 °C. Bacterial pellets of GST-tagged proteins were 7 (17). Of note, the N-terminal region of CCM3 has also been lysed in 20 mM HEPES, pH 7.5, 400 mM NaCl, and 5 mM -mer- implicated in the interaction with GCKIII proteins in cells and captoethanol, and the supernatant was applied to glutathione- model organisms (5, 13, 19). Given the critical role for CCM3 Sepharose resin (GE Healthcare). The protein of interest was and GCKIII proteins in maintaining vascular integrity, we have separated from the GST affinity tag following overnight incu- probed the basis for their interaction in close detail. The results bation with TEV protease and further purified by size exclusion presented here demonstrate that the amino terminus of CCM3 chromatography as described above. The heterodimeric CCM3 interacts directly with the C-terminal regions of GCKIII pro- and MST4 complex was obtained by mixing bacterial lysates teins. Based on sequence similarity between the interacting expressing GST-MST4 and His-CCM3 proteins. Protein eluted regions of CCM3 and GCKIII proteins, we propose that het- from a nickel-chelating column was applied directly to gluta- erodimerization of the two proteins is achieved through an thione Sepharose resin and subsequently purified as described analogous structural mechanism to that reported for the above for GST-tagged proteins. homodimerization for CCM3 and present data indicating that In Vitro Binding Studies—Bacterial or SF9 cell lysates con- heterodimerization may be favored over homodimerization. taining GST fusion proteins were prepared as above, however EXPERIMENTAL PROCEDURES the supernatant was applied to glutathione-Sepharose resin (GE Healthcare) in GST-loading buffer containing 20 mM Cloning of Expression Constructs—PDCD10/CCM3, Downloaded from HEPES, pH 7.5, 400 mM NaCl, and 5 mM -mercaptoethanol STK25/SOK1, MST4, STK4/MST1, and STRN3 were ampli- and washed extensively. The protein-bound affinity resin was fied by PCR and cloned into the modified bacterial expres- equilibrated with interaction buffer (20 mM HEPES, pH 7.5, 150 sion vectors pGEX-TEV and/or ProEX-TEV. CCM3 point mM NaCl, and 5 mM -mercaptoethanol). Previously purified mutations were generated by PCR using standard tech- binding partner proteins were added to the protein-bound niques, and all clones were sequence verified. The N- http://www.jbc.org/ affinity resin and incubated on ice with gentle mixing for 20 terminal mutant of CCM3 (LAIL-4D) comprises L44D, min. The affinity resin was then washed three times with 500 l A47D,I66D,L67D and the C-terminal mutant (K4A) comprises of interaction buffer and aliquots of the binding reactions were K132A,K139A, K172A,K179A. CCM3 point mutants were sub- separated by SDS-PAGE with proteins visualized following cloned into the pcDNA5-FRT-GFP vector (20) for expression Coomassie staining. in mammalian cells. pcDNA3-FLAG-MST4 was reported pre- Light Scattering—Size exclusion chromatography-multi- by guest on May 21, 2015 viously (14). Protein Expression and Purification—BL21-Codonϩ cells angle light scattering (SEC-MALS) was performed with 200 M (Agilent Technologies) were transformed and grown to A of protein samples injected onto a 24-ml S200 Superdex column 600 and measured using a three-angle (45, 90, and 135°) miniDawn 0.8 and induced by addition of 0.25 mM isopropyl 1-thio--D- galactopyranoside for 12–18 h at 18 °C.