Morphological Stasis Abd Molecular Divergence in the Intercontinental Disjunct Genus Datisca (Datiscaceae) Aaron Liston Rancho Santa Ana Botanic Garden
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They Come in Teams
GBE Frankia-Enriched Metagenomes from the Earliest Diverging Symbiotic Frankia Cluster: They Come in Teams Thanh Van Nguyen1, Daniel Wibberg2, Theoden Vigil-Stenman1,FedeBerckx1, Kai Battenberg3, Kirill N. Demchenko4,5, Jochen Blom6, Maria P. Fernandez7, Takashi Yamanaka8, Alison M. Berry3, Jo¨ rn Kalinowski2, Andreas Brachmann9, and Katharina Pawlowski 1,* 1Department of Ecology, Environment and Plant Sciences, Stockholm University, Sweden 2Center for Biotechnology (CeBiTec), Bielefeld University, Germany 3Department of Plant Sciences, University of California, Davis 4Laboratory of Cellular and Molecular Mechanisms of Plant Development, Komarov Botanical Institute, Russian Academy of Sciences, Saint Petersburg, Russia 5Laboratory of Molecular and Cellular Biology, All-Russia Research Institute for Agricultural Microbiology, Saint Petersburg, Russia 6Bioinformatics and Systems Biology, Justus Liebig University, Gießen, Germany 7Ecologie Microbienne, Centre National de la Recherche Scientifique UMR 5557, Universite Lyon I, Villeurbanne Cedex, France 8Forest and Forestry Products Research Institute, Ibaraki, Japan 9Biocenter, Ludwig Maximilians University Munich, Planegg-Martinsried, Germany *Corresponding author: E-mail: [email protected]. Accepted: July 10, 2019 Data deposition: This project has been deposited at EMBL/GenBank/DDBJ under the accession PRJEB19438 - PRJEB19449. Abstract Frankia strains induce the formation of nitrogen-fixing nodules on roots of actinorhizal plants. Phylogenetically, Frankia strains can be grouped in four clusters. The earliest divergent cluster, cluster-2, has a particularly wide host range. The analysis of cluster-2 strains has been hampered by the fact that with two exceptions, they could never be cultured. In this study, 12 Frankia-enriched meta- genomes of Frankia cluster-2 strains or strain assemblages were sequenced based on seven inoculum sources. Sequences obtained via DNA isolated from whole nodules were compared with those of DNA isolated from fractionated preparations enhanced in the Frankia symbiotic structures. -
Comparative Analysis of the Nodule Transcriptomes of Ceanothus Thyrsiflorus (Rhamnaceae, Rosales) and Datisca Glomerata (Datiscaceae, Cucurbitales)
fpls-09-01629 November 12, 2018 Time: 18:56 # 1 ORIGINAL RESEARCH published: 14 November 2018 doi: 10.3389/fpls.2018.01629 Comparative Analysis of the Nodule Transcriptomes of Ceanothus thyrsiflorus (Rhamnaceae, Rosales) and Datisca glomerata (Datiscaceae, Cucurbitales) Marco G. Salgado1, Robin van Velzen2, Thanh Van Nguyen1, Kai Battenberg3, Alison M. Berry3, Daniel Lundin4,5 and Katharina Pawlowski1* 1 Department of Ecology, Environment and Plant Sciences, Stockholm University, Stockholm, Sweden, 2 Laboratory of Molecular Biology, Department of Plant Sciences, Wageningen University, Wageningen, Netherlands, 3 Department of Plant Sciences, University of California, Davis, Davis, CA, United States, 4 Centre for Ecology and Evolution in Microbial Model Systems, Linnaeus University, Kalmar, Sweden, 5 Department of Biochemistry and Biophysics, Stockholm University, Stockholm, Sweden Edited by: Stefan de Folter, Two types of nitrogen-fixing root nodule symbioses are known, rhizobial and actinorhizal Centro de Investigación y de Estudios symbioses. The latter involve plants of three orders, Fagales, Rosales, and Cucurbitales. Avanzados (CINVESTAV), Mexico To understand the diversity of plant symbiotic adaptation, we compared the nodule Reviewed by: Luis Wall, transcriptomes of Datisca glomerata (Datiscaceae, Cucurbitales) and Ceanothus Universidad Nacional de Quilmes thyrsiflorus (Rhamnaceae, Rosales); both species are nodulated by members of the (UNQ), Argentina Costas Delis, uncultured Frankia clade, cluster II. The analysis focused on various features. In Technological Educational Institute both species, the expression of orthologs of legume Nod factor receptor genes of Peloponnese, Greece was elevated in nodules compared to roots. Since arginine has been postulated as *Correspondence: export form of fixed nitrogen from symbiotic Frankia in nodules of D. glomerata, the Katharina Pawlowski [email protected] question was whether the nitrogen metabolism was similar in nodules of C. -
The Actinorhizal Symbiosis of Datisca Glomerata: Search for Nodule-Specific Marker Genes Irina V
The actinorhizal symbiosis of Datisca glomerata: Search for nodule-specific marker genes Irina V. Demina Academic dissertation for the Degree of Doctor of Philosophy in Plant Physiology at Stockholm University to be publicly defended on Wednesday 25 September 2013 at 13:00 in föreläsningssalen, Institutionen för ekologi, miljö och botanik, Lilla Frescativägen 5. Abstract The actinorhizal symbiosis is entered by nitrogen-fixing actinobacteria of the genus Frankia and a large group of woody plant species distributed among eight dicot families. The actinorhizal symbiosis, as well as the legume-rhizobia symbiosis, involves the stable intracellular accommodation of the microsymbionts in special organs called root nodules. Within the nodules, the nitrogen-fixing bacteria are provided with carbon sources by the host plant while supplying the plant with fixed nitrogen, which is often a limiting factor in plant growth and development. Datisca glomerata (C. Presl.) Baill. (Datiscaceae, Cucurbitales) is a suffruticose plant with a relatively short generation time of six months, and therefore represents the actinorhizal species most suited as a genetic model system. In order to obtain an overview of nodule development and metabolism, the nodule transcriptome was analyzed. Comparison of nodule vs. root transcriptomes allowed identification of potential marker genes for nodule development. The activity of the promoters of two of these genes was studied in planta. Furthermore, auxins and cytokinins were quantified in roots and nodules, and the auxin responses in roots were compared in D. glomerata and the model legume Medicago truncatula. Our results indicate that in actinorhizal plants signaling in the root epidermis leading to nodule organogenesis follows the common symbiosis pathway described for the legume-rhizobia symbiosis and arbuscular mycorrhiza. -
Seed Shape Quantification in the Order Cucurbitales
ISSN 2226-3063 e-ISSN 2227-9555 Modern Phytomorphology 12: 1–13, 2018 https://doi.org/10.5281/zenodo.1174871 RESEARCH ARTICLE Seed shape quantification in the order Cucurbitales Emilio Cervantes 1, 2*, José Javier Martín Gómez 1 1 Instituto de Recursos Naturales y Agrobiología de Salamanca-Consejo Superior de Investigaciones Científicas (IRNASA–CSIC), Cordel de Merinas 40, 37008 Salamanca, Spain; * [email protected] 2 Grupo de Investigación Reconocido Bases Moleculares del Desarrollo, Universidad de Salamanca (GIR BMD-USAL), Edificio Departamental, Campus Miguel de Unamuno, 37007 Salamanca, Spain Received: 03.10.2017 | Accepted: 23.01.2018 | Published: 17.02.2018 Abstract Seed shape quantification in diverse species of the families belonging to the order Cucurbitales is done based on the comparison of seed images with geometric figures. Quantification of seed shape is a useful tool in plant description for phenotypic characterization and taxonomic analysis. J index gives the percent of similarity of the image of a seed with a geometric figure and it is useful in taxonomy for the study of relationships between plant groups. Geometric figures used as models in the Cucurbitales are the ovoid, two ellipses with different x/y ratios and the outline of the Fibonacci spiral. The images of seeds have been compared with these figures and values of J index obtained. The results obtained for 29 species in the family Cucurbitaceae support a relationship between seed shape and species ecology. Simple seed shape, with images resembling simple geometric figures like the ovoid, ellipse or the Fibonacci spiral, may be a feature in the basal clades of taxonomic groups. -
Doc 6259.Indd
LETTERS TO NATURE Functional androdioecy in the either hermaphrodite or male throughout the growing season (Table 1). flowering plant Datisca glomerata If physiological conditions determine thesexof plants, then we would have expected younger or smaller individuals to be Aaron Liston*, Loren H. Rieseberg & Thomas S. Elias male, and mature plants to be hermaphroditen. But 24 plants grown from seed collected in two completely hermaphrodite Rancho Santa Ana Botanic Garden, Graduate Program in Botany, populations flowered aftertwo yearsand were all herma- 1500 North College Avenue, Claremont, California 91711-3101, USA phrodites. We observed three additional plants cultivated at the Rancho Santa Ana Botanic Garden over three growing seasons, THErole of androdioecy (the presence of male and hermaphrodite and eight plants growing in the Big Tujunga Canyon population, individuals in a breeding population) in the evolution of dioecy and found no instances of year-to-yearsexchanges. Long-term has long been the subject of much interest and discussion1-9. But observations of marked individuals in the experimental and no functionally androdioecious species has been previously docu- natural populations are continuing. mented2 and recent studies have even raised doubt about whether We quantified thesexratios in 10 populations and found that the phenomenon exists at all3. Although many cases of androdioecy a 1 : 1sex ratio,as would be expected in a functionally dioecious have been reported, most of these are based on morphological data plant2,does not exist between male and hermaphrodite alone and, when examined in detail, are actually found to be individuals in D. glomerata (Table 1). In those populations in functionally dioecioue-12. -
Checklist of the Vascular Plants of San Diego County 5Th Edition
cHeckliSt of tHe vaScUlaR PlaNtS of SaN DieGo coUNty 5th edition Pinus torreyana subsp. torreyana Downingia concolor var. brevior Thermopsis californica var. semota Pogogyne abramsii Hulsea californica Cylindropuntia fosbergii Dudleya brevifolia Chorizanthe orcuttiana Astragalus deanei by Jon P. Rebman and Michael G. Simpson San Diego Natural History Museum and San Diego State University examples of checklist taxa: SPecieS SPecieS iNfRaSPecieS iNfRaSPecieS NaMe aUtHoR RaNk & NaMe aUtHoR Eriodictyon trichocalyx A. Heller var. lanatum (Brand) Jepson {SD 135251} [E. t. subsp. l. (Brand) Munz] Hairy yerba Santa SyNoNyM SyMBol foR NoN-NATIVE, NATURaliZeD PlaNt *Erodium cicutarium (L.) Aiton {SD 122398} red-Stem Filaree/StorkSbill HeRBaRiUM SPeciMeN coMMoN DocUMeNTATION NaMe SyMBol foR PlaNt Not liSteD iN THE JEPSON MANUAL †Rhus aromatica Aiton var. simplicifolia (Greene) Conquist {SD 118139} Single-leaF SkunkbruSH SyMBol foR StRict eNDeMic TO SaN DieGo coUNty §§Dudleya brevifolia (Moran) Moran {SD 130030} SHort-leaF dudleya [D. blochmaniae (Eastw.) Moran subsp. brevifolia Moran] 1B.1 S1.1 G2t1 ce SyMBol foR NeaR eNDeMic TO SaN DieGo coUNty §Nolina interrata Gentry {SD 79876} deHeSa nolina 1B.1 S2 G2 ce eNviRoNMeNTAL liStiNG SyMBol foR MiSiDeNtifieD PlaNt, Not occURRiNG iN coUNty (Note: this symbol used in appendix 1 only.) ?Cirsium brevistylum Cronq. indian tHiStle i checklist of the vascular plants of san Diego county 5th edition by Jon p. rebman and Michael g. simpson san Diego natural history Museum and san Diego state university publication of: san Diego natural history Museum san Diego, california ii Copyright © 2014 by Jon P. Rebman and Michael G. Simpson Fifth edition 2014. isBn 0-918969-08-5 Copyright © 2006 by Jon P. -
Floral Structure and Systematics in Four Orders of Rosids, Including a Broad Survey of floral Mucilage Cells
Pl. Syst. Evol. 260: 199–221 (2006) DOI 10.1007/s00606-006-0443-8 Floral structure and systematics in four orders of rosids, including a broad survey of floral mucilage cells M. L. Matthews and P. K. Endress Institute of Systematic Botany, University of Zurich, Switzerland Received November 11, 2005; accepted February 5, 2006 Published online: July 20, 2006 Ó Springer-Verlag 2006 Abstract. Phylogenetic studies have greatly ened mucilaginous inner cell wall and a distinct, impacted upon the circumscription of taxa within remaining cytoplasm is surveyed in 88 families the rosid clade, resulting in novel relationships at and 321 genera (349 species) of basal angiosperms all systematic levels. In many cases the floral and eudicots. These cells were found to be most structure of these taxa has never been compared, common in rosids, particulary fabids (Malpighi- and in some families, even studies of their floral ales, Oxalidales, Fabales, Rosales, Fagales, Cuc- structure are lacking. Over the past five years we urbitales), but were also found in some malvids have compared floral structure in both new and (Malvales). They are notably absent or rare in novel orders of rosids. Four orders have been asterids (present in campanulids: Aquifoliales, investigated including Celastrales, Oxalidales, Stemonuraceae) and do not appear to occur in Cucurbitales and Crossosomatales, and in this other eudicot clades or in basal angiosperms. paper we attempt to summarize the salient results Within the flower they are primarily found in the from these studies. The clades best supported by abaxial epidermis of sepals. floral structure are: in Celastrales, the enlarged Celastraceae and the sister relationship between Celastraceae and Parnassiaceae; in Oxalidales, the Key words: androecium, Celastrales, Crossoso- sister relationship between Oxalidaceae and Con- matales, Cucurbitales, gynoecium, Oxalidales. -
Chloroplast Gene Sequence Data Suggest a Single Origin of the Predisposition for Symbiotic Nitrogen Filxation in Angiosperms DOUGLAS E
Proc. Natl. Acad. Sci. USA Vol. 92, pp. 2647-2651, March 1995 Evolution Chloroplast gene sequence data suggest a single origin of the predisposition for symbiotic nitrogen fiLxation in angiosperms DOUGLAS E. SoLTIs*, PAMELA S. SoLTIs*, DAVID R. MORGANt, SUSAN M. SWENSENt, BETH C. MULLIN§, JULIE M. DOWDI, AND PETER G. MARTIN II *Department of Botany, Washington State University, Pullman, WA 99164-4238; tDepartment of Biology, Western Washington University, Bellingham, WA 98225; tDepartment of Biology, Indiana University, Bloomington, IN 47405; §Department of Botany, Center for Legume Research, University of Tennessee, Knoxville, TN 37996; and IDepartment of Botany, University of Adelaide, Adelaide, South Australia 5005, Australia Communicated by Michael T. Clegg University of California, Riverside, CA, November 14, 1994 ABSTRACT Of the approximately 380 families of angio- Table 1. Angiosperm families that participate in nodular sperms, representatives of only 10 are known to form symbi- nitrogen-fixing symbioses and the frequency of this association in otic associations with nitrogen-fixing bacteria in root nod- each family ules. The morphologically based classification schemes pro- Total no. of genera*/genera posed by taxonomists suggest that many of these 10 families Prokaryote Family having root nodulest of plants are only distantly related, engendering the hypoth- esis that the capacity to fix nitrogen evolved independently Rhizobium Fabaceae 640/most several, if not many, times. This has in turn influenced Ulmaceae 18/1 attitudes toward the likelihood of transferring genes respon- Frankia Betulaceae 6/1 sible for symbiotic nitrogen fixation to crop species lacking Casuarinaceae 4/4 this ability. Phylogenetic analysis of DNA sequences for the Elaeagnaceae 3/3 chloroplast gene rbcL indicates, however, that representatives Myricaceae 3/2 of all 10 families with nitrogen-fixing symbioses occur to- Rhamnaceae 55/7 gether, with several families lacking this association, in a Rosaceae 100/5 single clade. -
Angiosperm Phylogeny Inferred from Sequences of Four Mitochondrial Genes 1Yin-Long QIU∗ 1Libo LI 1Bin WANG 1,2Jia-Yu XUE 1Tory A
Journal of Systematics and Evolution 48 (6): 391–425 (2010) doi: 10.1111/j.1759-6831.2010.00097.x Angiosperm phylogeny inferred from sequences of four mitochondrial genes 1Yin-Long QIU∗ 1Libo LI 1Bin WANG 1,2Jia-Yu XUE 1Tory A. HENDRY 1Rui-Qi LI 1Joseph W. BROWN 1Ya n g L I U 1Geordan T. HUDSON 3Zhi-Duan CHEN 1(Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI 48109, USA) 2(School of Life Sciences, Nanjing University, Nanjing 210093, China) 3(Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China) Abstract An angiosperm phylogeny was reconstructed in a maximum likelihood analysis of sequences of four mitochondrial genes, atp1, matR, nad5, and rps3, from 380 species that represent 376 genera and 296 families of seed plants. It is largely congruent with the phylogeny of angiosperms reconstructed from chloroplast genes atpB, matK, and rbcL, and nuclear 18S rDNA. The basalmost lineage consists of Amborella and Nymphaeales (including Hydatellaceae). Austrobaileyales follow this clade and are sister to the mesangiosperms, which include Chloranthaceae, Ceratophyllum, magnoliids, monocots, and eudicots. With the exception of Chloranthaceae being sister to Ceratophyllum, relationships among these five lineages are not well supported. In eudicots, Ranunculales, Sabiales, Proteales, Trochodendrales, Buxales, Gunnerales, Saxifragales, Vitales, Berberidopsidales, and Dilleniales form a basal grade of lines that diverged before the diversification of rosids and asterids. Within rosids, the COM (Celastrales–Oxalidales–Malpighiales) clade is sister to malvids (or rosid II), instead of to the nitrogen-fixing clade as found in all previous large-scale molecular analyses of angiosperms. Santalales and Caryophyllales are members of an expanded asterid clade. -
Additions to Italian Pleosporinae, Including Italica Heraclei Sp. Nov
Biodiversity Data Journal 9: e59648 doi: 10.3897/BDJ.9.e59648 Taxonomic Paper Additions to Italian Pleosporinae, including Italica heraclei sp. nov. Subodini N. Wijesinghe‡,§,|, Yong Wang ‡, Laura Zucconi¶, Monika C. Dayarathne‡, Saranyaphat Boonmee§,|, Erio Camporesi #, Dhanushka N. Wanasinghe¤,«,», Kevin D. Hyde §,¤,˄ ‡ Department of Plant Pathology, Agriculture College, Guizhou University, Guiyang, Guizhou Province, 550025, China § Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand | School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand ¶ Department of Ecological and Biological Sciences, University of Tuscia, Largo dell'Università snc, 01100, Viterbo, Italy # A.M.B. Gruppo Micologico Forlivese “Antonio Cicognani”, Via Roma 18, Forlì, Italy ¤ CAS Key Laboratory for Plant Biodiversity and Biogeography of East Asia (KLPB), Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, China « East and Central Asia Regional Office, World Agroforestry Centre (ICRAF), Kunming 650201, Yunnan, China » Honghe Center for Mountain Futures, Kunming Institute of Botany, Chinese Academy of Sciences, Honghe County, Yunnan, China ˄ Innovative Institute of Plant Health, Zhongkai University of Agriculture and Enginnering, Haizhu District, Guangzhou 510225, China Corresponding author: Yong Wang ([email protected]) Academic editor: Danny Haelewaters Received: 14 Oct 2020 | Accepted: 23 Dec 2020 | Published: 18 Jan 2021 Citation: Wijesinghe SN, Wang Y, Zucconi L, Dayarathne MC, Boonmee S, Camporesi E, Wanasinghe DN, Hyde KD (2021) Additions to Italian Pleosporinae, including Italica heraclei sp. nov. Biodiversity Data Journal 9: e59648. https://doi.org/10.3897/BDJ.9.e59648 Abstract Background In the last few years, many microfungi—including plant-associated species—have been reported from various habitats and substrates in Italy. -
Classification of the Vegetation Alliances and Associations of the Northern Sierra Nevada Foothills, California
Classification of the Vegetation Alliances and Associations of the Northern Sierra Nevada Foothills, California Volume 1 of 2 – Introduction, Methods, and Results By Anne Klein Josie Crawford Julie Evens Vegetation Program California Native Plant Society Todd Keeler-Wolf Diana Hickson Vegetation Classification and Mapping Program California Department of Fish and Game For the Resources Management and Policy Division California Department of Fish and Game Contract Number: P0485520 December 2007 This report consists of two volumes. This volume (Volume 1) contains the project introduction, methods, and results, as well as literature cited, and appendices. Volume 2 includes descriptions of the vegetation alliances and associations defined for this project. This classification report covers vegetation associations and alliances attributed to the northern Sierra Nevada Foothills, California. This classification has been developed in consultation with many individuals and agencies and incorporates information from a variety of publications and other classifications. Comments and suggestions regarding the contents of this subset should be directed to: Anne Klein Julie Evens Vegetation Ecologist Senior Vegetation Ecologist California Dept. of Fish and Game California Native Plant Society Sacramento, CA Sacramento, CA <[email protected]> <[email protected]> Todd Keeler-Wolf Senior Vegetation Ecologist California Dept. of Fish and Game Sacramento, CA <[email protected]> Copyright © 2007 California Native Plant Society, 2707 K Street, Suite 1 Sacramento, CA 95816, U.S.A. All Rights Reserved. Citation: The following citation should be used in any published materials that reference this report: Klein, A., J. Crawford, J. Evens, T. Keeler-Wolf, and D. Hickson. 2007. Classification of the vegetation alliances and associations of the northern Sierra Nevada Foothills, California. -
Seed Structure in Datiscaceae (1926)
Neerl. Acta Bot. 33(4), November 1984, p. 419-429. Ovule and seed structure in Datiscaceae F.D. Boesewinkel Hugo de Vries-Laboratorium, Universiteit van Amsterdam, Plantage Middenlaan 2a, 1018 DD Amsterdam SUMMARY The ovule primordiumof Datisca cannabina is dizonate. The crassinucellate ovule has dermal, two- layered integuments that become crushed duringtheir development,the exotesta excepted. The oper- culum contains the hilum and the and is lifted micropyle during germinationwithout a special zone of The rupture. embryological and seed characteristics ofDatiscaceae strongly support aclose rela- tionship with the Begoniaceae. 1. INTRODUCTION The Datiscaceae family comprises the genera Datisca, Octomeles and Tetra- meles. The Octomeles monotypic genera and Tetrameles represent tall trees which have distribution. The an Indomalaysian genus Datisca comprises two herbaceous perennial species of which D. cannabina occurs in Asia and D. glo- merata in western CentralAmerica. All genera have many-seeded capsules open- with slits ing apical or splitting laterally. The ovules and seeds of Datisca cannabina were studied by Montemartini (1905), Himmelbauer(1909), Mauritzon (1936), Crete(1952) and Kamelina (1983). Sand (1921) gives information about the ovule and developing seeds of Tetrameles. Netolitzky (1926), Davis (1966) and Corner (1976) have summarized the data on Datiscaceae. The ovules are bitegmic, anatropous and crassinucellate. In Datisca cannabina the lower of the two dyad cells develops into an embryo of sac the Allium type. The embryo constitutes the biggest part of the seed. The endosperm is initially nuclear, and later becomes cellular. In the mature seed it is cell represented by only a single layer. All seed coat layers become crushed, except the exotesta of which only the inner and radial walls become The seeds of Datisca Sand have lignified.