The Taxonomy and Phylogenetics of the Human and Animal Pathogen
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PUBLIC LIBRARY of SCIENCE | plosgenetics.org | ISSN 1553-7390 | Volume 2 | Issue 12 | DECEMBER 2006 GENETICS PUBLIC LIBRARY of SCIENCE www.plosgenetics.org Volume 2 | Issue 12 | DECEMBER 2006 Interview Review Knight in Common Armor: 1949 Unraveling the Genetics 1956 An Interview with Sir John Sulston e225 of Human Obesity e188 Jane Gitschier David M. Mutch, Karine Clément Research Articles Natural Variants of AtHKT1 1964 The Complete Genome 2039 Enhance Na+ Accumulation e210 Sequence and Comparative e206 in Two Wild Populations of Genome Analysis of the High Arabidopsis Pathogenicity Yersinia Ana Rus, Ivan Baxter, enterocolitica Strain 8081 Balasubramaniam Muthukumar, Nicholas R. Thomson, Sarah Jeff Gustin, Brett Lahner, Elena Howard, Brendan W. Wren, Yakubova, David E. Salt Matthew T. G. Holden, Lisa Crossman, Gregory L. Challis, About the Cover Drosophila SPF45: A Bifunctional 1974 Carol Churcher, Karen The jigsaw image of representatives Protein with Roles in Both e178 Mungall, Karen Brooks, Tracey of various lines of eukaryote evolution Splicing and DNA Repair Chillingworth, Theresa Feltwell, refl ects the current lack of consensus as Ahmad Sami Chaouki, Helen K. Zahra Abdellah, Heidi Hauser, to how the major branches of eukaryotes Salz Kay Jagels, Mark Maddison, fi t together. The illustrations from upper Sharon Moule, Mandy Sanders, left to bottom right are as follows: a single Mammalian Small Nucleolar 1984 Sally Whitehead, Michael A. scale from the surface of Umbellosphaera; RNAs Are Mobile Genetic e205 Quail, Gordon Dougan, Julian Amoeba, the large amoeboid organism Elements Parkhill, Michael B. Prentice used as an introduction to protists for Michel J. Weber many school children; Euglena, the iconic Low Levels of Genetic 2052 fl agellate that is often used to challenge Soft Sweeps III: The Signature 1998 Divergence across e215 ideas of plants (Euglena has chloroplasts) of Positive Selection from e186 Geographically and and animals (Euglena moves); Stentor, Recurrent Mutation Linguistically Diverse one of the larger ciliates; Cacatua, the Pleuni S. -
The Closest Unicellular Relatives of Animals
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Current Biology, Vol. 12, 1773–1778, October 15, 2002, 2002 Elsevier Science Ltd. All rights reserved. PII S0960-9822(02)01187-9 The Closest Unicellular Relatives of Animals B.F. Lang,1,2 C. O’Kelly,1,3 T. Nerad,4 M.W. Gray,1,5 Results and Discussion and G. Burger1,2,6 1The Canadian Institute for Advanced Research The evolution of the Metazoa from single-celled protists Program in Evolutionary Biology is an issue that has intrigued biologists for more than a 2 De´ partement de Biochimie century. Early morphological and more recent ultra- Universite´ de Montre´ al structural and molecular studies have converged in sup- Succursale Centre-Ville porting the now widely accepted view that animals are Montre´ al, Que´ bec H3C 3J7 related to Fungi, choanoflagellates, and ichthyosporean Canada protists. However, controversy persists as to the spe- 3 Bigelow Laboratory for Ocean Sciences cific evolutionary relationships among these major P.O. Box 475 groups. This uncertainty is reflected in the plethora of 180 McKown Point Road published molecular phylogenies that propose virtually West Boothbay Harbor, Maine 04575 all of the possible alternative tree topologies involving 4 American Type Culture Collection Choanoflagellata, Fungi, Ichthyosporea, and Metazoa. 10801 University Boulevard For example, a monophyletic MetazoaϩChoanoflagel- Manassas, Virginia 20110 lata group has been suggested on the basis of small 5 Department of Biochemistry subunit (SSU) rDNA sequences [1, 6, 7]. Other studies and Molecular Biology using the same sequences have allied Choanoflagellata Dalhousie University with the Fungi [8], placed Choanoflagellata prior to the Halifax, Nova Scotia B3H 4H7 divergence of animals and Fungi [9], or even placed Canada them prior to the divergence of green algae and land plants [10]. -
Synchytrium Endobioticum (Schilb.) Percival Pest Risk Assessment for Oregon
Synchytrium endobioticum (Schilb.) Percival Pest Risk Assessment for Oregon This pest risk assessment follows the format used by the Exotic Forest Pest Information System for North America. For a description of the evaluation process used, see http://spfnic.fs.fed.us/exfor/download.cfm. IDENTITY Name: Synchytrium endobioticum (Schilb.) Percival Taxonomic Position: Chytridiales: Synchytriaceae Common Name: Potato wart disease RISK RATING SUMMARY Numerical Score: 6 Relative Risk Rating: HIGH Uncertainty: Very Certain Uncertainty in this assessment results from: Potato wart has been extensively studied in the countries in which it is established. RISK RATING DETAILS Establishment potential is HIGH Justification: Potato wart is apparently native to the Andes Mountains and has subsequently been spread throughout the world through the movement of infected or contaminated tubers. It has become successfully established in several countries in Europe, Asia, Africa, North America, South America, and Oceania. Previous detections in Maryland, Pennsylvania, and West Virginia had reportedly been eradicated by 1974, although surveys conducted in Maryland revealed the presence of resting spores of the pathogen were still present in one home garden. The spores were reportedly non-viable. Spread potential is MODERATE Justification: Potato wart has been spread throughout the world through the movement of infested tubers. Local spread is primarily through the movement of contaminated soil on equipment, vehicle tires, tubers, and plants. Spores may also be spread by wind. Symptoms in the field may not manifest until after repeated cultivation of susceptible hosts within a field or garden. Infected tubers may not manifest symptoms until in storage; however, meristematic tissue (sprouts) may be so severely affected plants will not emerge from infected seed tubers. -
Bodenmikrobiologie (Version: 07/2019)
Langzeitmonitoring von Ökosystemprozessen - Methoden-Handbuch Modul 04: Bodenmikrobiologie (Version: 07/2019) www.hohetauern.at Impressum Impressum Für den Inhalt verantwortlich: Dr. Fernando Fernández Mendoza & Prof. Mag Dr. Martin Grube Institut für Biologie, Bereich Pflanzenwissenschaften, Universität Graz, Holteigasse 6, 8010 Graz Nationalparkrat Hohe Tauern, Kirchplatz 2, 9971 Matrei i.O. Titelbild: Ein Transekt im Untersuchungsgebiet Innergschlöss (2350 m üNN) wird im Jahr 2017 beprobt. © Newesely Zitiervorschlag: Fernández Mendoza F, Grube M (2019) Langzeitmonitoring von Ökosystemprozessen im Nationalpark Hohe Tauern. Modul 04: Mikrobiologie. Methoden-Handbuch. Verlag der Österreichischen Akademie der Wissenschaften, Wien. ISBN-Online: 978-3-7001-8752-3, doi: 10.1553/GCP_LZM_NPHT_Modul04 Weblink: https://verlag.oeaw.ac.at und http://www.parcs.at/npht/mmd_fullentry.php?docu_id=38612 Inhaltsverzeichnis Zielsetzung ...................................................................................................................................................... 1 Inhalt Vorbereitungsarbeit und benötigtes Material ................................................................................................... 2 a. Materialien für die Probenahme und Probenaufbewahrung ................................................................ 2 b. Materialien und Geräte für die Laboranalyse ...................................................................................... 2 Arbeitsablauf ................................................................................................................................................... -
Old Woman Creek National Estuarine Research Reserve Management Plan 2011-2016
Old Woman Creek National Estuarine Research Reserve Management Plan 2011-2016 April 1981 Revised, May 1982 2nd revision, April 1983 3rd revision, December 1999 4th revision, May 2011 Prepared for U.S. Department of Commerce Ohio Department of Natural Resources National Oceanic and Atmospheric Administration Division of Wildlife Office of Ocean and Coastal Resource Management 2045 Morse Road, Bldg. G Estuarine Reserves Division Columbus, Ohio 1305 East West Highway 43229-6693 Silver Spring, MD 20910 This management plan has been developed in accordance with NOAA regulations, including all provisions for public involvement. It is consistent with the congressional intent of Section 315 of the Coastal Zone Management Act of 1972, as amended, and the provisions of the Ohio Coastal Management Program. OWC NERR Management Plan, 2011 - 2016 Acknowledgements This management plan was prepared by the staff and Advisory Council of the Old Woman Creek National Estuarine Research Reserve (OWC NERR), in collaboration with the Ohio Department of Natural Resources-Division of Wildlife. Participants in the planning process included: Manager, Frank Lopez; Research Coordinator, Dr. David Klarer; Coastal Training Program Coordinator, Heather Elmer; Education Coordinator, Ann Keefe; Education Specialist Phoebe Van Zoest; and Office Assistant, Gloria Pasterak. Other Reserve staff including Dick Boyer and Marje Bernhardt contributed their expertise to numerous planning meetings. The Reserve is grateful for the input and recommendations provided by members of the Old Woman Creek NERR Advisory Council. The Reserve is appreciative of the review, guidance, and council of Division of Wildlife Executive Administrator Dave Scott and the mapping expertise of Keith Lott and the late Steve Barry. -
Multigene Eukaryote Phylogeny Reveals the Likely Protozoan Ancestors of Opis- Thokonts (Animals, Fungi, Choanozoans) and Amoebozoa
Accepted Manuscript Multigene eukaryote phylogeny reveals the likely protozoan ancestors of opis- thokonts (animals, fungi, choanozoans) and Amoebozoa Thomas Cavalier-Smith, Ema E. Chao, Elizabeth A. Snell, Cédric Berney, Anna Maria Fiore-Donno, Rhodri Lewis PII: S1055-7903(14)00279-6 DOI: http://dx.doi.org/10.1016/j.ympev.2014.08.012 Reference: YMPEV 4996 To appear in: Molecular Phylogenetics and Evolution Received Date: 24 January 2014 Revised Date: 2 August 2014 Accepted Date: 11 August 2014 Please cite this article as: Cavalier-Smith, T., Chao, E.E., Snell, E.A., Berney, C., Fiore-Donno, A.M., Lewis, R., Multigene eukaryote phylogeny reveals the likely protozoan ancestors of opisthokonts (animals, fungi, choanozoans) and Amoebozoa, Molecular Phylogenetics and Evolution (2014), doi: http://dx.doi.org/10.1016/ j.ympev.2014.08.012 This is a PDF file of an unedited manuscript that has been accepted for publication. As a service to our customers we are providing this early version of the manuscript. The manuscript will undergo copyediting, typesetting, and review of the resulting proof before it is published in its final form. Please note that during the production process errors may be discovered which could affect the content, and all legal disclaimers that apply to the journal pertain. 1 1 Multigene eukaryote phylogeny reveals the likely protozoan ancestors of opisthokonts 2 (animals, fungi, choanozoans) and Amoebozoa 3 4 Thomas Cavalier-Smith1, Ema E. Chao1, Elizabeth A. Snell1, Cédric Berney1,2, Anna Maria 5 Fiore-Donno1,3, and Rhodri Lewis1 6 7 1Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK. -
An Ichthyophonus Hoferi Epizootic in Herring in the North Sea, the Skagerrak, the Kattegat and the Baltic Sea
Downloaded from orbit.dtu.dk on: Oct 04, 2021 An Ichthyophonus hoferi epizootic in herring in the North Sea, the Skagerrak, the Kattegat and the Baltic Sea Mellergaard, Stig; Spanggaard, Bettina Published in: Diseases of Aquatic Organisms Link to article, DOI: 10.3354/dao028191 Publication date: 1997 Document Version Publisher's PDF, also known as Version of record Link back to DTU Orbit Citation (APA): Mellergaard, S., & Spanggaard, B. (1997). An Ichthyophonus hoferi epizootic in herring in the North Sea, the Skagerrak, the Kattegat and the Baltic Sea. Diseases of Aquatic Organisms, 28(3), 191-199. https://doi.org/10.3354/dao028191 General rights Copyright and moral rights for the publications made accessible in the public portal are retained by the authors and/or other copyright owners and it is a condition of accessing publications that users recognise and abide by the legal requirements associated with these rights. Users may download and print one copy of any publication from the public portal for the purpose of private study or research. You may not further distribute the material or use it for any profit-making activity or commercial gain You may freely distribute the URL identifying the publication in the public portal If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. DISEASES OF AQUATIC ORGANISMS Vol. 28: 191-199, 1997 Published March 27 Dis Aquat Org 1 An Ichthyophonus hoferi epizootic in herring in the North Sea, the Skagerrak, the Kattegat and the Baltic Sea 'Danish Institute of Fisheries Research, Department for Marine and Coastal Ecology. -
Towards a Management Hierarchy (Classification) for the Catalogue of Life
TOWARDS A MANAGEMENT HIERARCHY (CLASSIFICATION) FOR THE CATALOGUE OF LIFE Draft Discussion Document Rationale The Catalogue of Life partnership, comprising Species 2000 and ITIS (Integrated Taxonomic Information System), has the goal of achieving a comprehensive catalogue of all known species on Earth by the year 2011. The actual number of described species (after correction for synonyms) is not presently known but estimates suggest about 1.8 million species. The collaborative teams behind the Catalogue of Life need an agreed standard classification for these 1.8 million species, i.e. a working hierarchy for management purposes. This discussion document is intended to highlight some of the issues that need clarifying in order to achieve this goal beyond what we presently have. Concerning Classification Life’s diversity is classified into a hierarchy of categories. The best-known of these is the Kingdom. When Carl Linnaeus introduced his new “system of nature” in the 1750s ― Systema Naturae per Regna tria naturae, secundum Classes, Ordines, Genera, Species …) ― he recognised three kingdoms, viz Plantae, Animalia, and a third kingdom for minerals that has long since been abandoned. As is evident from the title of his work, he introduced lower-level taxonomic categories, each successively nested in the other, named Class, Order, Genus, and Species. The most useful and innovative aspect of his system (which gave rise to the scientific discipline of Systematics) was the use of the binominal, comprising genus and species, that uniquely identified each species of organism. Linnaeus’s system has proven to be robust for some 250 years. The starting point for botanical names is his Species Plantarum, published in 1753, and that for zoological names is the tenth edition of the Systema Naturae published in 1758. -
Notophthalmus Viridescens) by a New Species of Amphibiocystidium, a Genus of Fungus-Like Mesomycetozoan Parasites Not Previously Reported in North America
203 Widespread infection of the Eastern red-spotted newt (Notophthalmus viridescens) by a new species of Amphibiocystidium, a genus of fungus-like mesomycetozoan parasites not previously reported in North America T. R. RAFFEL1,2*, T. BOMMARITO 3, D. S. BARRY4, S. M. WITIAK5 and L. A. SHACKELTON1 1 Center for Infectious Disease Dynamics, Biology Department, Penn State University, University Park, PA 16802, USA 2 Department of Biology, University of South Florida, Tampa, FL 33620, USA 3 Cooperative Wildlife Research Lab, Department of Zoology, Southern Illinois University, Carbondale, IL 62901, USA 4 Department of Biological Sciences, Marshall University, Huntington, WV 25755, USA 5 Department of Plant Pathology, Penn State University, University Park, PA 16802, USA (Received 21 March 2007; revised 17 August 2007; accepted 20 August 2007; first published online 12 October 2007) SUMMARY Given the worldwide decline of amphibian populations due to emerging infectious diseases, it is imperative that we identify and address the causative agents. Many of the pathogens recently implicated in amphibian mortality and morbidity have been fungal or members of a poorly understood group of fungus-like protists, the mesomycetozoans. One mesomycetozoan, Amphibiocystidium ranae, is known to infect several European amphibian species and was associated with a recent decline of frogs in Italy. Here we present the first report of an Amphibiocystidium sp. in a North American amphibian, the Eastern red-spotted newt (Notophthalmus viridescens), and characterize it as the new species A. viridescens in the order Dermocystida based on morphological, geographical and phylogenetic evidence. We also describe the widespread and seasonal distribution of this parasite in red-spotted newt populations and provide evidence of mortality due to infection. -
High Prevalence of the Parasite Sphaerothecum
Aquatic Invasions (2013) Volume 8, Issue 3: 355–360 doi: http://dx.doi.org/10.3391/ai.2013.8.3.12 Open Access © 2013 The Author(s). Journal compilation © 2013 REABIC Short Communication High prevalence of the parasite Sphaerothecum destruens in the invasive topmouth gudgeon Pseudorasbora parva in the Netherlands, a potential threat to native freshwater fish Frank Spikmans1*, Tomas van Tongeren2, Theo A. van Alen2, Gerard van der Velde3,4 and Huub J.M. Op den Camp2 1 Reptile, Amphibian & Fish Conservation the Netherlands, P.O. Box 1413, 6501 BK, Nijmegen, The Netherlands 2 Radboud University Nijmegen, Institute for Water and Wetland Research, Department of Microbiology, P.O. Box 9010, 6500 GL Nijmegen, The Netherlands 3 Radboud University Nijmegen, Institute for Water and Wetland Research, Department of Animal Ecology and Ecophysiology, P.O. Box 9100, 6500 GL Nijmegen, The Netherlands 4 Naturalis Biodiversity Center, P.O. Box 9517, 2300 RA Leiden, The Netherlands E-mail: [email protected] (FS), [email protected] (TvT), [email protected] (TAvA), [email protected] (GvdV), [email protected] (HJMOC) *Corresponding author Received: 12 April 2013 / Accepted: 23 July 2013 / Published online: 9 August 2013 Handling editor: Vadim Panov Abstract The prevalence of Sphaerothecum destruens, a pathogenic parasite, was studied in two wild populations of topmouth gudgeon (Pseudorasbora parva), an invasive freshwater fish non-native to the Netherlands. Using genetic markers and sequencing of the 18S rRNA gene, we showed the prevalence of this parasite to be 67 to 74%. Phylogenetic analysis demonstrated a high similarity with known sequences of S. -
A Unicellular Relative of Animals Generates a Layer of Polarized Cells
RESEARCH ARTICLE A unicellular relative of animals generates a layer of polarized cells by actomyosin- dependent cellularization Omaya Dudin1†*, Andrej Ondracka1†, Xavier Grau-Bove´ 1,2, Arthur AB Haraldsen3, Atsushi Toyoda4, Hiroshi Suga5, Jon Bra˚ te3, In˜ aki Ruiz-Trillo1,6,7* 1Institut de Biologia Evolutiva (CSIC-Universitat Pompeu Fabra), Barcelona, Spain; 2Department of Vector Biology, Liverpool School of Tropical Medicine, Liverpool, United Kingdom; 3Section for Genetics and Evolutionary Biology (EVOGENE), Department of Biosciences, University of Oslo, Oslo, Norway; 4Department of Genomics and Evolutionary Biology, National Institute of Genetics, Mishima, Japan; 5Faculty of Life and Environmental Sciences, Prefectural University of Hiroshima, Hiroshima, Japan; 6Departament de Gene`tica, Microbiologia i Estadı´stica, Universitat de Barcelona, Barcelona, Spain; 7ICREA, Barcelona, Spain Abstract In animals, cellularization of a coenocyte is a specialized form of cytokinesis that results in the formation of a polarized epithelium during early embryonic development. It is characterized by coordinated assembly of an actomyosin network, which drives inward membrane invaginations. However, whether coordinated cellularization driven by membrane invagination exists outside animals is not known. To that end, we investigate cellularization in the ichthyosporean Sphaeroforma arctica, a close unicellular relative of animals. We show that the process of cellularization involves coordinated inward plasma membrane invaginations dependent on an *For correspondence: actomyosin network and reveal the temporal order of its assembly. This leads to the formation of a [email protected] (OD); polarized layer of cells resembling an epithelium. We show that this stage is associated with tightly [email protected] (IR-T) regulated transcriptional activation of genes involved in cell adhesion. -
Impact of the Invasive Alien Topmouth Gudgeon (Pseudorasbora Parva) and Its Associated Parasite Sphaerothecum Destruens on Native fish Species
Biol Invasions (2020) 22:587–601 https://doi.org/10.1007/s10530-019-02114-6 (0123456789().,-volV)( 0123456789().,-volV) ORIGINAL PAPER Impact of the invasive alien topmouth gudgeon (Pseudorasbora parva) and its associated parasite Sphaerothecum destruens on native fish species Frank Spikmans . Pim Lemmers . Huub J. M. op den Camp . Emiel van Haren . Florian Kappen . Anko Blaakmeer . Gerard van der Velde . Frank van Langevelde . Rob S. E. W. Leuven . Theo A. van Alen Received: 30 August 2018 / Accepted: 16 October 2019 / Published online: 12 November 2019 Ó The Author(s) 2019 Abstract The Asian cyprinid Pseudorasbora parva is P. parva. We explored the use of environmental DNA considered to be a major threat to native fish commu- (eDNA) techniques to detect S. destruens. Prevalence of nities and listed as an invasive alien species of European S. destruens in native fish species was assessed. Fish Union concern. Our study aims to gain evidence-based samplings showed significantly negative correlations knowledge on the impact of both P. parva and its between the abundance of P. parva and the native parasite Sphaerothecum destruens on native fish popu- Leucaspius delineatus,andPungitius pungitius and lations by analysing fish assemblages and body condi- three biodiversity indices of the fish assemblages tion of individuals of native fish species in floodplain (Simpson’s diversity index, Shannon–Wiener index water bodies that were invaded and uninvaded by and evenness). Contrastingly, the abundances of the native Gasterosteus aculeatus and P. parva were positively related. In nearly all isolated water bodies Electronic supplementary material The online version of with P. parva, this species is outnumbering native fish this article (https://doi.org/10.1007/s10530-019-02114-6) con- species.