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PDF Output of CLIC (Clustering by Inferred Co-Expression) PDF Output of CLIC (clustering by inferred co-expression) Dataset: Num of genes in input gene set: 45 Total number of genes: 16493 CLIC PDF output has three sections: 1) Overview of Co-Expression Modules (CEMs) Heatmap shows pairwise correlations between all genes in the input query gene set. Red lines shows the partition of input genes into CEMs, ordered by CEM strength. Each row shows one gene, and the brightness of squares indicates its correlations with other genes. Gene symbols are shown at left side and on the top of the heatmap. 2) Details of each CEM and its expansion CEM+ Top panel shows the posterior selection probability (dataset weights) for top GEO series datasets. Bottom panel shows the CEM genes (blue rows) as well as expanded CEM+ genes (green rows). Each column is one GEO series dataset, sorted by their posterior probability of being selected. The brightness of squares indicates the gene's correlations with CEM genes in the corresponding dataset. CEM+ includes genes that co-express with CEM genes in high-weight datasets, measured by LLR score. 3) Details of each GEO series dataset and its expression profile: Top panel shows the detailed information (e.g. title, summary) for the GEO series dataset. Bottom panel shows the background distribution and the expression profile for CEM genes in this dataset. Overview of Co-Expression Modules (CEMs) with Dataset Weighting Scale of average Pearson correlations Num of Genes in Query Geneset: 45. Num of CEMs: 1. 0.0 0.2 0.4 0.6 0.8 1.0 Mrpl2 Mrps10 Mrpl46 Mrps34 Mrpl16 Mrps23 Mrpl44 Mrps30 Apex1 Mrps27 Mrpl45 Rpl7l1 Mrpl4 Mrpl50 Mrpl54 Rps27l Qtrt1 Mrpl14 Rpl27 Mrpl24 Prmt3 Serp1 Rps13 Rps7 Mettl17 Dnajc21 Rps18 Mrpl19 Canx Rps11 Mrpl33 Rps6kl1 Abcf1 Rps9 Mrpl38 Rps25 Srp68 Mrps5 Rps10 Rps17 Hspa14 Gcn1l1 Rpl3l Mrpl17 Mrpl21 Mrpl2 Mrps10 Mrpl46 Mrps34 Mrpl16 Mrps23 Mrpl44 Mrps30 Apex1 Mrps27 Mrpl45 CEM 1 (339 datasets) Rpl7l1 Mrpl4 Mrpl50 Mrpl54 Rps27l Qtrt1 Mrpl14 Rpl27 Mrpl24 Prmt3 Serp1 Rps13 Rps7 Mettl17 Dnajc21 Rps18 Mrpl19 Canx Rps11 Mrpl33 Rps6kl1 Abcf1 Singletons Rps9 Mrpl38 Rps25 Srp68 Mrps5 Rps10 Rps17 Hspa14 Gcn1l1 Rpl3l Mrpl17 Mrpl21 Gadd45gip1 Symbol Num ofCEMGenes:21.Predicted1106.SelectedDatasets:339.Strength:26.1 CEM 1,Geneset"[G]ribosome",Page1 Mrps18b Timm23 Timm13 Exosc4 Mrps35 Mrps17 Mrps28 Mrps27 Mrps30 Mrps23 Mrps34 Mrps10 Sssca1 Atp5g1 Stoml2 Psmb3 Psmb5 Psmg1 Rps27l Mrpl28 Mrpl36 Mrpl22 Mrpl40 Mrpl11 Mrpl12 Mrpl24 Mrpl14 Mrpl54 Mrpl50 Mrpl45 Mrpl44 Mrpl16 Mrpl46 Grpel1 C1qbp Rpl7l1 Apex1 Naa10 Mrps7 Prmt3 Polr2f Emg1 Rpl27 Mrpl4 Mrpl2 Nhp2 Phb2 Qtrt1 Clpp 0.0 1.0 GSE48397 [10] GSE16874 [12] GSE52542 [9] Only showingfirst200datasets-Seetxtoutputforfulldetails. GSE23833 [12] GSE27114 [6] GSE28389 [20] GSE46090 [12] GSE46606 [30] GSE20954 [14] GSE27092 [6] GSE38031 [8] GSE53951 [10] GSE56345 [9] GSE30160 [6] GSE13693 [9] GSE42238 [9] GSE10273 [9] GSE11973 [6] GSE11220 [44] GSE7275 [8] GSE46094 [10] GSE11222 [42] GSE20391 [11] GSE21944 [6] GSE18587 [9] GSE6196 [9] GSE13692 [8] GSE39458 [6] GSE38304 [8] GSE51608 [6] GSE12518 [6] GSE42883 [12] GSE56135 [8] GSE44923 [16] GSE5127 [18] GSE47872 [6] GSE41759 [14] GSE26616 [6] GSE35593 [6] GSE44175 [18] GSE31028 [6] GSE17728 [12] GSE25645 [17] GSE17709 [18] GSE32311 [11] GSE13547 [12] GSE26096 [10] GSE7759 [112] GSE40685 [11] GSE27379 [6] GSE22824 [24] GSE20987 [12] GSE46496 [9] GSE45968 [6] GSE8025 [21] GSE34961 [9] GSE13805 [7] GSE27811 [9] GSE15587 [6] GSE32277 [33] GSE7020 [8] GSE40230 [15] GSE10589 [6] GSE23040 [6] GSE31244 [6] GSE13611 [8] GSE10587 [6] GSE53077 [8] GSE25825 [8] GSE33121 [10] GSE25423 [10] GSE12464 [23] GSE16454 [24] GSE37907 [24] GSE7050 [18] GSE38538 [6] GSE21063 [24] GSE46091 [8] GSE51385 [8] GSE41942 [6] GSE27378 [8] GSE24061 [88] GSE14753 [6] GSE23408 [39] GSE8044 [6] GSE16925 [15] GSE45619 [6] GSE18135 [18] GSE34126 [19] GSE27605 [8] GSE58307 [20] GSE5976 [12] GSE55607 [18] GSE31598 [12] GSE17373 [24] GSE46797 [6] GSE7897 [60] GSE6998 [32] GSE21041 [6] GSE22180 [60] GSE55356 [6] GSE20500 [6] GSE31313 [22] GSE38693 [8] GSE33471 [12] GSE12498 [12] GSE33199 [64] GSE21299 [12] GSE17497 [10] GSE2527 [6] GSE18907 [12] GSE38277 [18] GSE6116 [70] GSE31570 [6] GSE36392 [9] GSE30746 [16] GSE39897 [36] GSE10912 [6] GSE6837 [8] GSE18042 [18] GSE8431 [12] GSE12499 [10] GSE9652 [11] GSE9441 [36] GSE56482 [8] GSE34065 [6] GSE54653 [6] GSE5035 [12] GSE7948 [13] GSE23101 [20] GSE8683 [11] GSE6030 [6] GSE59437 [30] GSE35543 [6] GSE21905 [6] GSE27816 [14] GSE54056 [12] GSE10365 [9] GSE30293 [8] GSE7381 [6] GSE38754 [40] GSE25778 [6] GSE39391 [21] GSE27786 [20] GSE15155 [12] GSE47414 [18] GSE36814 [20] GSE35785 [10] GSE47205 [10] GSE24628 [16] GSE5332 [12] GSE13408 [14] GSE6674 [15] GSE3554 [6] CEM+ CEM GSE13707 [20] GSE12049 [6] GSE15268 [16] GSE21900 [12] GSE36974 [14] GSE43899 [12] 0.0 GSE6933 [15] GSE35160 [6] GSE5891 [6] Scale ofaveragePearsoncorrelations GSE48203 [9] GSE42299 [8] GSE38257 [14] GSE6881 [10] GSE43779 [6] GSE19474 [12] 0.2 GSE21278 [48] GSE42021 [27] GSE25252 [10] GSE30012 [6] GSE9355 [51] GSE35998 [20] GSE3313 [24] GSE33761 [9] GSE15267 [8] 0.4 GSE15808 [29] GSE55525 [71] GSE24789 [9] GSE17462 [8] GSE43197 [27] GSE1871 [12] GSE31702 [10] GSE13302 [30] GSE27329 [24] 0.6 GSE7460 [52] GSE22989 [10] GSE19954 [8] GSE40282 [6] GSE34279 [30] GSE48204 [6] GSE46211 [18] GSE51080 [18] GSE15541 [12] 0.8 GSE32615 [10] GSE8684 [10] GSE46723 [6] GSE11572 [12] Score 130.87 131.10 131.29 132.14 132.29 133.42 134.16 134.73 134.90 135.45 135.88 136.46 139.33 142.37 143.32 143.91 144.09 144.87 145.21 145.48 146.78 146.96 149.72 150.03 150.10 150.94 155.14 156.68 157.51 1.0 Notes Symbol Num ofCEMGenes:21.Predicted1106.SelectedDatasets:339.Strength:26.1 CEM 1,Geneset"[G]ribosome",Page2 Rps19bp1 Timm17a Samm50 Tomm22 Tomm20 Tomm40 Mrps18a Tmem11 Timm10 Ndufaf6 Chchd1 Ccdc58 Mrps12 Mrps22 Mrps16 Dctpp1 Psmb6 Psmb2 Psmg3 Psmb4 Psma7 Psmc4 Mrpl20 Mrpl34 Mrpl42 Mrpl13 Mrpl37 Mrpl18 Mrpl55 Polr2h Nop10 Wdr74 Wdr18 Nop16 Aimp2 Hspe1 Polr2j Banf1 Yars2 Nif3l1 Sf3b5 Emc6 Lsm4 Imp4 Mtx1 Adsl Eif3i Parl Fxn Uxt 0.0 1.0 GSE48397 [10] GSE16874 [12] GSE52542 [9] Only showingfirst200datasets-Seetxtoutputforfulldetails. GSE23833 [12] GSE27114 [6] GSE28389 [20] GSE46090 [12] GSE46606 [30] GSE20954 [14] GSE27092 [6] GSE38031 [8] GSE53951 [10] GSE56345 [9] GSE30160 [6] GSE13693 [9] GSE42238 [9] GSE10273 [9] GSE11973 [6] GSE11220 [44] GSE7275 [8] GSE46094 [10] GSE11222 [42] GSE20391 [11] GSE21944 [6] GSE18587 [9] GSE6196 [9] GSE13692 [8] GSE39458 [6] GSE38304 [8] GSE51608 [6] GSE12518 [6] GSE42883 [12] GSE56135 [8] GSE44923 [16] GSE5127 [18] GSE47872 [6] GSE41759 [14] GSE26616 [6] GSE35593 [6] GSE44175 [18] GSE31028 [6] GSE17728 [12] GSE25645 [17] GSE17709 [18] GSE32311 [11] GSE13547 [12] GSE26096 [10] GSE7759 [112] GSE40685 [11] GSE27379 [6] GSE22824 [24] GSE20987 [12] GSE46496 [9] GSE45968 [6] GSE8025 [21] GSE34961 [9] GSE13805 [7] GSE27811 [9] GSE15587 [6] GSE32277 [33] GSE7020 [8] GSE40230 [15] GSE10589 [6] GSE23040 [6] GSE31244 [6] GSE13611 [8] GSE10587 [6] GSE53077 [8] GSE25825 [8] GSE33121 [10] GSE25423 [10] GSE12464 [23] GSE16454 [24] GSE37907 [24] GSE7050 [18] GSE38538 [6] GSE21063 [24] GSE46091 [8] GSE51385 [8] GSE41942 [6] GSE27378 [8] GSE24061 [88] GSE14753 [6] GSE23408 [39] GSE8044 [6] GSE16925 [15] GSE45619 [6] GSE18135 [18] GSE34126 [19] GSE27605 [8] GSE58307 [20] GSE5976 [12] GSE55607 [18] GSE31598 [12] GSE17373 [24] GSE46797 [6] GSE7897 [60] GSE6998 [32] GSE21041 [6] GSE22180 [60] GSE55356 [6] GSE20500 [6] GSE31313 [22] GSE38693 [8] GSE33471 [12] GSE12498 [12] GSE33199 [64] GSE21299 [12] GSE17497 [10] GSE2527 [6] GSE18907 [12] GSE38277 [18] GSE6116 [70] GSE31570 [6] GSE36392 [9] GSE30746 [16] GSE39897 [36] GSE10912 [6] GSE6837 [8] GSE18042 [18] GSE8431 [12] GSE12499 [10] GSE9652 [11] GSE9441 [36] GSE56482 [8] GSE34065 [6] GSE54653 [6] GSE5035 [12] GSE7948 [13] GSE23101 [20] GSE8683 [11] GSE6030 [6] GSE59437 [30] GSE35543 [6] GSE21905 [6] GSE27816 [14] GSE54056 [12] GSE10365 [9] GSE30293 [8] GSE7381 [6] GSE38754 [40] GSE25778 [6] GSE39391 [21] GSE27786 [20] GSE15155 [12] GSE47414 [18] GSE36814 [20] GSE35785 [10] GSE47205 [10] GSE24628 [16] GSE5332 [12] GSE13408 [14] GSE6674 [15] GSE3554 [6] CEM+ CEM GSE13707 [20] GSE12049 [6] GSE15268 [16] GSE21900 [12] GSE36974 [14] GSE43899 [12] 0.0 GSE6933 [15] GSE35160 [6] GSE5891 [6] Scale ofaveragePearsoncorrelations GSE48203 [9] GSE42299 [8] GSE38257 [14] GSE6881 [10] GSE43779 [6] GSE19474 [12] 0.2 GSE21278 [48] GSE42021 [27] GSE25252 [10] GSE30012 [6] GSE9355 [51] GSE35998 [20] GSE3313 [24] GSE33761 [9] GSE15267 [8] 0.4 GSE15808 [29] GSE55525 [71] GSE24789 [9] GSE17462 [8] GSE43197 [27] GSE1871 [12] GSE31702 [10] GSE13302 [30] GSE27329 [24] 0.6 GSE7460 [52] GSE22989 [10] GSE19954 [8] GSE40282 [6] GSE34279 [30] GSE48204 [6] GSE46211 [18] GSE51080 [18] GSE15541 [12] 0.8 GSE32615 [10] GSE8684 [10] GSE46723 [6] GSE11572 [12] Score 112.49 112.61 112.88 113.31 113.34 113.41 113.43 113.68 113.76 114.12 114.43 114.47 114.54 115.89 116.77 117.36 117.38 117.43 117.78 118.26 119.06 119.21 120.04 120.17 120.18 120.27 120.33 120.50 120.72 120.77 121.48 121.64 122.13 124.10 124.28 125.24 125.59 125.84 125.98 126.16 126.47 126.58 127.16 127.45 127.89 129.04 129.76 130.32 130.47 130.84 1.0 Notes Symbol Num ofCEMGenes:21.Predicted1106.SelectedDatasets:339.Strength:26.1 CEM 1,Geneset"[G]ribosome",Page3 BC003965 Aurkaip1 N6amt2 Exosc5 Mrps26 H2-Ke2 Ndufb6 Aarsd1 Malsu1 Ndufv2 Ruvbl2 Cmss1 Psma6 Mrpl10 Mrpl39 Mrpl27 Polr1d Polr2c Polr1c Wdr55 Cops6 Ddx39 Uqcc2 Eif1ad Cdc34 Ddx49 Ddx56 Dpy30 Znhit3 Snrpc Nudt1 Park7 Pold2 Bola2 Phf5a Nme1 Lsm2 Sdhd Pycrl Kti12 Eif3d Eif3g Hax1
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