The Israeli Journal of Aquaculture - Bamidgeh, IJA 69.2017.1385, 19 Pages
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University of Oklahoma
UNIVERSITY OF OKLAHOMA GRADUATE COLLEGE MACRONUTRIENTS SHAPE MICROBIAL COMMUNITIES, GENE EXPRESSION AND PROTEIN EVOLUTION A DISSERTATION SUBMITTED TO THE GRADUATE FACULTY in partial fulfillment of the requirements for the Degree of DOCTOR OF PHILOSOPHY By JOSHUA THOMAS COOPER Norman, Oklahoma 2017 MACRONUTRIENTS SHAPE MICROBIAL COMMUNITIES, GENE EXPRESSION AND PROTEIN EVOLUTION A DISSERTATION APPROVED FOR THE DEPARTMENT OF MICROBIOLOGY AND PLANT BIOLOGY BY ______________________________ Dr. Boris Wawrik, Chair ______________________________ Dr. J. Phil Gibson ______________________________ Dr. Anne K. Dunn ______________________________ Dr. John Paul Masly ______________________________ Dr. K. David Hambright ii © Copyright by JOSHUA THOMAS COOPER 2017 All Rights Reserved. iii Acknowledgments I would like to thank my two advisors Dr. Boris Wawrik and Dr. J. Phil Gibson for helping me become a better scientist and better educator. I would also like to thank my committee members Dr. Anne K. Dunn, Dr. K. David Hambright, and Dr. J.P. Masly for providing valuable inputs that lead me to carefully consider my research questions. I would also like to thank Dr. J.P. Masly for the opportunity to coauthor a book chapter on the speciation of diatoms. It is still such a privilege that you believed in me and my crazy diatom ideas to form a concise chapter in addition to learn your style of writing has been a benefit to my professional development. I’m also thankful for my first undergraduate research mentor, Dr. Miriam Steinitz-Kannan, now retired from Northern Kentucky University, who was the first to show the amazing wonders of pond scum. Who knew that studying diatoms and algae as an undergraduate would lead me all the way to a Ph.D. -
Morphological Development of Embryos and Juveniles in the Mozambique Tilapia, Oreochromis Mossambicus As a Direct Developmental Fish Under Rearing Conditions
SUISANZOSHOKU 51(3), 295-306 (2003) Morphological Development of Embryos and Juveniles in the Mozambique Tilapia, Oreochromis mossambicus as a Direct Developmental Fish under Rearing Conditions Katsunori TACHIHARA*1,2 and Emi OBARA*1 (Accepted June 17, 2003) Abstract: The Mozambique tilapia, Oreochromis mossambicus is one of the species introduced to Okinawa Island. This species breeds widely in the rivers of the island. In order to understand the biological aspects of O. mossambicus under the natural conditions of the island, a detailed observa- tion of early morphological development was done under rearing conditions. The development of O . mossambicus was studied; it consisted of an embryonic phase of approximately 88 hours and 30 minutes, a free embryonic phase of about 12 days, followed by the juvenile period. The embryo became free-swimming on the sixth day of the free embryonic phase. The osteological develop- ment using enzyme-cleared specimens indicated that after reaching the juvenile stage, develop- ment of almost basic bones was complete 25 days after hatching. Key words: Oreochromis mossambicus; Direct development; Early life history; Okinawa Island The Mozambique tilapia, Oreochromis mos- sambicus is a freshwater fish, which has been Materials and Methods introduced to Okinawa Island1-3). The species is endemic to southern African rivers, lagoons Three mouthbreeding females (122.7 to and lakes, and ranges from the lower Zambezi 124.7 mm in standard length) harboring newly system in the north to the Bushmans River fertilized ova were collected from the Onaha in the south4). This species was introduced to River, Nishihara, Okinawa, Japan, on June 4, Okinawa Island in 1954 from Taiwan as a source 1997, using a cast net (mesh size: 1•~1 cm). -
Mozambique Tilapia)
UWI The Online Guide to the Animals of Trinidad and Tobago Behaviour Oreochromis mossambicus (Mozambique Tilapia) Family: Cichlidae (Cichlids and Tilapias) Order: Perciformes (Perch and Cichlids) Class: Actinopterygii (Ray-finned Fish) Fig. 1. Mozambique tilapia, Oreochromis mossambicus. [http://ja.wikipedia.org/wiki/%E3%83%95%E3%82%A1%E3%82%A4%E3%83%AB:Oreochromis_mossambicus_ by_NPS.jpg, downloaded 5 October 2012] TRAITS. Oreochromis mossambicus is a medium sized, laterally compressed fish that has long dorsal fins with 10-13 rays and spines (Froese & Pauly 2007). Its scales are large along the snout and fore head and become smaller along the body (Luna 2012). The coloration is a dull greenish yellow with weak banding pattern along the body (Froese & Pauly 2007). The adults range in size from 25 cm in the female to approximately 35 cm in the male. The male has an average weight of 2.5 pounds and the female ranges from 1.8-2 pounds at its maximum weight (Froese & Pauly 2007). O. mossambicus exhibits sexual dimorphism, the best descriptors are the premaxilla width, anal fin height and snout length; traits vital for agonistic displays, nesting and fighting (Oliveira & Almeda 1995). The size and coloration vary in captivity and with its diet. Some O. mossambicus look almost black in colour; females, non-breeding males and fry/ juveniles have a silvery colour on the scales (Luna 2012). O. mossambicus can live in both brackish and salt water and can survive a wide range of temperatures (Froese & Pauly 2007), and can live up to 11 years (Luna 2012). UWI The Online Guide to the Animals of Trinidad and Tobago Behaviour ECOLOGY. -
Relation of Desert Pupfish Abundance to Selected Environmental Variables
Environmental Biology of Fishes (2005) 73: 97–107 Ó Springer 2005 Relation of desert pupfish abundance to selected environmental variables in natural and manmade habitats in the Salton Sea basin Barbara A. Martin & Michael K. Saiki U.S. Geological Survey, Biological Resources Division, Western Fisheries Research Center-Dixon Duty Station, 6924 Tremont Road, Dixon, CA 95620, U.S.A. (e-mail: [email protected]) Received 6 April 2004 Accepted 12 October 2004 Key words: species assemblages, predation, water quality, habitat requirements, ecological interactions, endangered species Synopsis We assessed the relation between abundance of desert pupfish, Cyprinodon macularius, and selected biological and physicochemical variables in natural and manmade habitats within the Salton Sea Basin. Field sampling in a natural tributary, Salt Creek, and three agricultural drains captured eight species including pupfish (1.1% of the total catch), the only native species encountered. According to Bray– Curtis resemblance functions, fish species assemblages differed mostly between Salt Creek and the drains (i.e., the three drains had relatively similar species assemblages). Pupfish numbers and environmental variables varied among sites and sample periods. Canonical correlation showed that pupfish abundance was positively correlated with abundance of western mosquitofish, Gambusia affinis, and negatively correlated with abundance of porthole livebearers, Poeciliopsis gracilis, tilapias (Sarotherodon mossambica and Tilapia zillii), longjaw mudsuckers, Gillichthys mirabilis, and mollies (Poecilia latipinna and Poecilia mexicana). In addition, pupfish abundance was positively correlated with cover, pH, and salinity, and negatively correlated with sediment factor (a measure of sediment grain size) and dissolved oxygen. Pupfish abundance was generally highest in habitats where water quality extremes (especially high pH and salinity, and low dissolved oxygen) seemingly limited the occurrence of nonnative fishes. -
The Effects of Introduced Tilapias on Native Biodiversity
AQUATIC CONSERVATION: MARINE AND FRESHWATER ECOSYSTEMS Aquatic Conserv: Mar. Freshw. Ecosyst. 15: 463–483 (2005) Published online in Wiley InterScience (www.interscience.wiley.com). DOI: 10.1002/aqc.699 The effects of introduced tilapias on native biodiversity GABRIELLE C. CANONICOa,*, ANGELA ARTHINGTONb, JEFFREY K. MCCRARYc,d and MICHELE L. THIEMEe a Sustainable Development and Conservation Biology Program, University of Maryland, College Park, Maryland, USA b Centre for Riverine Landscapes, Faculty of Environmental Sciences, Griffith University, Australia c University of Central America, Managua, Nicaragua d Conservation Management Institute, College of Natural Resources, Virginia Tech, Blacksburg, Virginia, USA e Conservation Science Program, World Wildlife Fund, Washington, DC, USA ABSTRACT 1. The common name ‘tilapia’ refers to a group of tropical freshwater fish in the family Cichlidae (Oreochromis, Tilapia, and Sarotherodon spp.) that are indigenous to Africa and the southwestern Middle East. Since the 1930s, tilapias have been intentionally dispersed worldwide for the biological control of aquatic weeds and insects, as baitfish for certain capture fisheries, for aquaria, and as a food fish. They have most recently been promoted as an important source of protein that could provide food security for developing countries without the environmental problems associated with terrestrial agriculture. In addition, market demand for tilapia in developed countries such as the United States is growing rapidly. 2. Tilapias are well-suited to aquaculture because they are highly prolific and tolerant to a range of environmental conditions. They have come to be known as the ‘aquatic chicken’ because of their potential as an affordable, high-yield source of protein that can be easily raised in a range of environments } from subsistence or ‘backyard’ units to intensive fish hatcheries. -
Influence of Salinity on Aquaculture Species Richness in the Mangrove-River Connected Zone of Southwest Bangladesh 1Abdullah-Al Mamun
Influence of salinity on aquaculture species richness in the mangrove-river connected zone of southwest Bangladesh 1Abdullah-Al Mamun 1 Department of Fisheries and Marine Science, Noakhali Science and Technology University, Noakhali, Bangladesh. Corresponding author: A. Mamun, [email protected] Abstract. Two export fishery commodities, black tiger shrimp (Penaeus monodon) and giant river prawn (Macrobrachium rosenbergii) are grown in the low-lying agricultural land known as ‘gher’ in Bangladesh. The gher area is interlinked to both upstream tributaries and adjacent mangroves by rivers, canals, channels and other watercourses. The mangrove-river connectivity (MRC), water salinity and tidal flush have made the system dynamic. The present descriptive study was carried out in the southwest coastal area of Bangladesh to provide a baseline for aquaculture species distribution and occurrence related to water salinity. Salinity and MRC network largely define the aquatic farming in the region with or without integration of rice and dyke crop. Based on the surface water salinity, soil salinity, underground water salinity and indicator species, the agro-ecology of the area is divided into: high saline area (HS; >10 ppt most of the time of a year); medium saline area (MS; 5-10 ppt); low saline area (LS; typically <5 ppt); and freshwater area (FW; <0.5 ppt). In addition, a pocket gher system, which is a low saline gher, in higher saline areas located in elevated land areas are proposed. From 200 randomly selected gher across 4 agro-ecologies, 56 different fish and crustaceans species were sampled both in dry and wet seasons. The species richness was correlated to salinity and MRC network. -
"Plastid Originand Evolution". In: Encyclopedia of Life
CORE Metadata, citation and similar papers at core.ac.uk Provided by University of Queensland eSpace Plastid Origin and Advanced article Evolution Article Contents . Introduction Cheong Xin Chan, Rutgers University, New Brunswick, New Jersey, USA . Primary Plastids and Endosymbiosis . Secondary (and Tertiary) Plastids Debashish Bhattacharya, Rutgers University, New Brunswick, New Jersey, USA . Nonphotosynthetic Plastids . Plastid Theft . Plastid Origin and Eukaryote Evolution . Concluding Remarks Online posting date: 15th November 2011 Plastids (or chloroplasts in plants) are organelles within organisms that emerged ca. 2.8 billion years ago (Olson, which photosynthesis takes place in eukaryotes. The ori- 2006), followed by the evolution of eukaryotic algae ca. 1.5 gin of the widespread plastid traces back to a cyano- billion years ago (Yoon et al., 2004) and finally by the rise of bacterium that was engulfed and retained by a plants ca. 500 million years ago (Taylor, 1988). Photosynthetic reactions occur within the cytosol in heterotrophic protist through a process termed primary prokaryotes. In eukaryotes, however, the reaction takes endosymbiosis. Subsequent (serial) events of endo- place in the organelle, plastid (e.g. chloroplast in plants). symbiosis, involving red and green algae and potentially The plastid also houses many other reactions that are other eukaryotes, yielded the so-called ‘complex’ plastids essential for growth and development in algae and plants; found in photosynthetic taxa such as diatoms, dino- for example, the -
Final Synthesis Document Fish and Fisheries of the Salton Sea
1 Final Synthesis Document Fish and Fisheries of the Salton Sea Dr. Barry Costa-Pierce Institute of Marine Science University of Southern Mississippi Ocean Springs, MS 39564 Tel: 228-875-9368 Fax: 228-875-0528 [email protected] http://www.masgc.org/director/costapierce.html Background There are three distinct phases of development of the fish community of the Salton Sea : 1 . the ancient and modem freshwater phase; 2. the marine introduction and establishment phase ; 3. the hypersaline tilapia phase . The Freshwater and Marine Phases Lake Cahuilla filled the Salton basin to the Coachella Valley at various times until the latter part of the 16th century (Weide 1976) . Archaeological excavations of the ancient lake basin have found the following species of freshwater fish : Elops affinis (machete) Gila robusta (bonytail), Mugil cephalus (striped mullet), Ptchocheilus lucius, and Xyrauchen texanus (humpback sucker) (Yohe 1990) . Desert Cahuilla Indians developed highly sophisticated stone traps to catch migrating fish in the ancient lake (Costa-Pierce 1985), the remains of which can be seen today along State Road 86 in Salton City, just north of the Tarantula Ridge . After the modem Sea was formed in 1905-06, Evermann (1916) reported sizeable populations of the following fishes in order of their abundance . 2 Fish reported in the Salton Sea in 1916 Fish Species Reported Abundance Cyprinus carpio "the most abundant species" Common carp Mugil cephalus "second most common" Striped mullet Xyrauchen texanus "common" but several with a starved appearance Humpback sucker Salmo gairdneri (now "common", some in "bleached but Oncorhynchus mykiss) excellent condition" Rainbow trout Gila robusta "common, but not observed" Bonytail Cyprinodon macularius "found at Figtree John Spring" Desert pupfish Source: Walker et al. -
Influence of the Calcium Carbonate Shell Of
fmars-08-664269 June 30, 2021 Time: 12:15 # 1 ORIGINAL RESEARCH published: 30 June 2021 doi: 10.3389/fmars.2021.664269 Influence of the Calcium Carbonate Shell of Coccolithophores on Ingestion and Growth of a Dinoflagellate Predator Mathias Haunost1*, Ulf Riebesell1, Francesco D’Amore1, Ole Kelting1 and Lennart T. Bach2 1 GEOMAR Helmholtz Centre for Ocean Research Kiel, Kiel, Germany, 2 Institute for Marine and Antarctic Studies, Ecology & Biodiversity, University of Tasmania, Hobart, TAS, Australia Coccolithophores are an important group of ∼200 marine phytoplankton species which cover themselves with a calcium carbonate shell called “coccosphere.” Coccolithophores are ecologically and biogeochemically important but the reason why they calcify remains elusive. One key function may be that the coccosphere offers protection against microzooplankton predation, which is one of the main causes of phytoplankton death in the ocean. Here, we investigated the effect of the coccosphere on ingestion and growth of the heterotrophic dinoflagellate Oxyrrhis marina. Calcified and decalcified cells of the coccolithophore species Emiliania huxleyi, Pleurochrysis carterae, and Gephyrocapsa oceanica were offered separately to the predator as well ∼ Edited by: as in an initial 1:1 mixture. The decrease of the prey concentrations and predator Per Juel Hansen, abundances were monitored over a period of 48–72 h. We found that O. marina did University of Copenhagen, Denmark not actively select against calcified cells, but rather showed a size selective feeding Reviewed by: behavior. Thus, the coccosphere does not provide a direct protection against grazing by Jozef I. Nissimov, University of Waterloo, Canada O. marina. However, O. marina showed slower growth when calcified coccolithophores Rong Bi, were fed. -
Selective Algicidal Action of Peptides Against Harmful Algal Bloom Species
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by PubMed Central Selective Algicidal Action of Peptides against Harmful Algal Bloom Species Seong-Cheol Park1, Jong-Kook Lee1, Si Wouk Kim2, Yoonkyung Park1,3* 1 Research Center for Proteinaceous Materials (RCPM), Chosun University, Gwangju, Republic of Korea, 2 Department of Environmental Engineering, Chosun University, Gwangju, Republic of Korea, 3 Department of Biotechnology, Chosun University, Gwangju, Republic of Korea Abstract Recently, harmful algal bloom (HAB), also termed ‘‘red tide’’, has been recognized as a serious problem in marine environments according to climate changes worldwide. Many novel materials or methods to prevent HAB have not yet been employed except for clay dispersion, in which can the resulting sedimentation on the seafloor can also cause alteration in marine ecology or secondary environmental pollution. In the current study, we investigated that antimicrobial peptide have a potential in controlling HAB without cytotoxicity to harmless marine organisms. Here, antimicrobial peptides are proposed as new algicidal compounds in combating HAB cells. HPA3 and HPA3NT3 peptides which exert potent antimicrobial activity via pore forming action in plasma membrane showed that HPA3NT3 reduced the motility of algal cells, disrupted their plasma membrane, and induced the efflux of intracellular components. Against raphidoflagellate such as Heterosigma akashiwo, Chattonella sp., and C. marina, it displayed a rapid lysing action in cell membranes at 1,4 mM within 2 min. Comparatively, its lysing effects occurred at 8 mM within 1 h in dinoflagellate such as Cochlodium polykrikoides, Prorocentrum micans, and P. minimum. Moreover, its lysing action induced the lysis of chloroplasts and loss of chlorophyll a. -
Museum Specimens Answer Question of Historic Occurrence of Nile Tilapia Oreochromis Niloticus (Linnaeus, 1758) in Florida (USA)
BioInvasions Records (2017) Volume 6, Issue 4: 383–391 Open Access DOI: https://doi.org/10.3391/bir.2017.6.4.14 © 2017 The Author(s). Journal compilation © 2017 REABIC Research Article Museum specimens answer question of historic occurrence of Nile tilapia Oreochromis niloticus (Linnaeus, 1758) in Florida (USA) Jeffrey E. Hill University of Florida/IFAS, SFRC Program in Fisheries and Aquatic Sciences, Tropical Aquaculture Laboratory, 1408 24th Street SE, Ruskin, FL 33570 USA *Corresponding author E-mail: [email protected] Received: 24 March 2017 / Accepted: 20 August 2017 / Published online: 11 September 2017 Handling editor: Charles W. Martin Abstract Nile tilapia Oreochromis niloticus (Linnaeus, 1758) is difficult to distinguish from the blue tilapia Oreochromis aureus (Steindachner, 1864), a species with which it readily hybridizes, and that has a well-documented invasion history from 1961 in Florida (USA). Extracting the differential histories of these two tilapia species is of particular interest for Florida invasive species regulation, but also is relevant for at least 32 countries where both species have been introduced. Museum specimens can provide key data to answer historical questions in invasion biology. Therefore I examined preserved specimens at the Florida Museum of Natural History (UF) (1) for misidentified Nile tilapia or the presence of Nile tilapia traits in blue tilapia specimens, (2) for misidentified Nile tilapia in other tilapia collections, and (3) to morphologically characterize Florida specimens of blue tilapia, Nile tilapia, and putative hybrids. The U.S. Geological Survey’s Nonindigenous Aquatic Species (USGS NAS) database was also examined for blue tilapia and Nile tilapia records. Blue tilapia lots dated to 1970, putative hybrids were present in blue tilapia lots since 1972 (10 counties), and Nile tilapia lots dated to 2007 (5 counties) in the UF collection. -
1 Table S1. Emiliania Huxleyi N and C Content (Pg/Cell)
1 1 Table S1. Emiliania huxleyi N and C content (pg/cell) Time Mean ± SD Mean ± SD Treatment Replicate pg N/cell pg C/cell (hours p.i.) pg N/cell pg C/cell A 1.580 9.190 B 1.550 9.580 C 1.500 9.036 0 1.507 ± 0.077 9.268 ± 0.1898 D 1.555 9.165 E 1.366 9.368 F 1.488 9.270 Eh inf A 1.945 11.102 B 1.755 10.758 C 1.782 10.991 24 1.889 ± 0.129 10.856 ± 0.430 D 2.093 10.216 E 1.816 10.607 F 1.945 11.461 A 1.480 8.559 B 1.573 8.242 C 1.434 8.988 0 1.507 ± 0.050 8.940 ± 0.936 D 1.551 10.778 E 1.511 8.681 F 1.494 8.394 Eh non-inf A 2.053 10.686 B 1.997 10.410 C 2.110 10.714 24 2.088 ± 0.072 10.415 ± 0.258 D 2.212 10.173 E 2.088 10.427 F 2.067 10.082 2 Emiliania huxleyi non-infected (Eh non-inf); Emiliania huxleyi infected with EhV-86 (Eh inf). Time indicate hours 3 post-infection. Values are mean ± one standard deviation. 4 5 6 7 8 9 10 11 12 13 O. MARINA RESPONSE TO INFECTED PREY 2 14 Table S2. Oxyrrhis marina’s average growth (day-1) and grazing rates (Eh cells Om-1 h-1 15 (experiment1) or Eh cells Om-1 day-1 (experiments 2 – 4) for each experiment under both diet 16 conditions.