Pharmacogenomics
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Clinical Pharmacology 1: Phase 1 Studies and Early Drug Development
Clinical Pharmacology 1: Phase 1 Studies and Early Drug Development Gerlie Gieser, Ph.D. Office of Clinical Pharmacology, Div. IV Objectives • Outline the Phase 1 studies conducted to characterize the Clinical Pharmacology of a drug; describe important design elements of and the information gained from these studies. • List the Clinical Pharmacology characteristics of an Ideal Drug • Describe how the Clinical Pharmacology information from Phase 1 can help design Phase 2/3 trials • Discuss the timing of Clinical Pharmacology studies during drug development, and provide examples of how the information generated could impact the overall clinical development plan and product labeling. Phase 1 of Drug Development CLINICAL DEVELOPMENT RESEARCH PRE POST AND CLINICAL APPROVAL 1 DISCOVERY DEVELOPMENT 2 3 PHASE e e e s s s a a a h h h P P P Clinical Pharmacology Studies Initial IND (first in human) NDA/BLA SUBMISSION Phase 1 – studies designed mainly to investigate the safety/tolerability (if possible, identify MTD), pharmacokinetics and pharmacodynamics of an investigational drug in humans Clinical Pharmacology • Study of the Pharmacokinetics (PK) and Pharmacodynamics (PD) of the drug in humans – PK: what the body does to the drug (Absorption, Distribution, Metabolism, Excretion) – PD: what the drug does to the body • PK and PD profiles of the drug are influenced by physicochemical properties of the drug, product/formulation, administration route, patient’s intrinsic and extrinsic factors (e.g., organ dysfunction, diseases, concomitant medications, -
The 5-HT6 Receptor Antagonist SB-271046 Selectively Enhances Excitatory Neurotransmission in the Rat Frontal Cortex and Hippocampus Lee A
The 5-HT6 Receptor Antagonist SB-271046 Selectively Enhances Excitatory Neurotransmission in the Rat Frontal Cortex and Hippocampus Lee A. Dawson, Ph.D., Huy Q. Nguyen, B.S., and Ping Li, B.S. Preclinical evidence has suggested a possible role for the 5-HT6 increases in extracellular glutamate levels in both frontal receptor in the treatment of cognitive dysfunction. However, cortex and dorsal hippocampus, respectively. These effects were currently there is little neurochemical evidence suggesting the completely attenuated by infusion of tetrodotoxin but mechanism(s) which may be involved. Using the selective unaffected by the muscarinic antagonist, atropine. Here we 5-HT6 antagonist SB-271046 and in vivo microdialysis, we demonstrate for the first time the selective enhancement of have evaluated the effects of this compound on the modulation excitatory neurotransmission by SB-271046 in those brain of basal neurotransmitter release within multiple brain regions regions implicated in cognitive and memory function, and of the freely moving rat. SB-271046 produced no change in provide mechanistic evidence in support of a possible basal levels of dopamine (DA), norepinephrine (NE) or 5-HT therapeutic role for 5-HT6 receptor antagonists in the in the striatum, frontal cortex, dorsal hippocampus or nucleus treatment of cognitive and memory dysfunction. accumbens. Similarly, this compound had no effect on [Neuropsychopharmacology 25:662–668, 2001] excitatory neurotransmission in the striatum or nucleus © 2001 American College of Neuropsychopharmacology. accumbens. Conversely, SB-271046 produced 3- and 2-fold Published by Elsevier Science Inc. KEY WORDS: 5-HT6 receptor; SB-271046; Microdialysis; sma et al. 1993; Ruat et al. -
An Update on ABCB1 Pharmacogenetics
The Pharmacogenomics Journal (2011) 11, 315–325 & 2011 Macmillan Publishers Limited. All rights reserved 1470-269X/11 www.nature.com/tpj REVIEW An update on ABCB1 pharmacogenetics: insights from a 3D model into the location and evolutionary conservation of residues corresponding to SNPs associated with drug pharmacokinetics SJ Wolf1,6, M Bachtiar1,6, The human ABCB1 protein, (P-glycoprotein or MDR1) is a membrane-bound 1 2 3 glycoprotein that harnesses the energy of ATP hydrolysis to drive the J Wang , TS Sim , SS Chong unidirectional transport of substrates from the cytoplasm to the extracellular 1,4,5 and CGL Lee space. As a large range of therapeutic agents are known substrates of ABCB1 protein, its role in the onset of multidrug resistance has been the focus of 1Department of Biochemistry, Yong Loo Lin School of Medicine, National University of much research. This role has been of particular interest in the field of Singapore, Singapore, Singapore; 2Department pharmacogenomics where genetic variation within the ABCB1 gene, of Microbiology, Yong Loo Lin School of Medicine, particularly in the form of single nucleotide polymorphisms (SNPs), is National University of Singapore, Singapore, believed to contribute to inter-individual variation in ABCB1 function and Singapore; 3Department of Pediatrics, Yong Loo Lin School of Medicine, National University of drug response. In this review we provide an update on the influence of Singapore, Singapore, Singapore; 4Division of coding region SNPs within the ABCB1 gene on drug pharmacokinetics. By Medical Sciences, National Cancer Centre, utilizing the crystal structure of the mouse ABCB1 homolog (Abcb1a), which Singapore, Singapore and 5Duke-NUS Graduate is 87% homologous to the human sequence, we accompany this discussion Medical School, Singapore, Singapore with a graphical representation of residue location for amino acids Correspondence: corresponding to human ABCB1 coding region SNPs. -
M100907, a Serotonin 5-HT2A Receptor Antagonist and Putative Antipsychotic, Blocks Dizocilpine-Induced Prepulse Inhibition Defic
M100907, a Serotonin 5-HT2A Receptor Antagonist and Putative Antipsychotic, Blocks Dizocilpine-Induced Prepulse Inhibition Deficits in Sprague–Dawley and Wistar Rats Geoffrey B. Varty, Ph.D., Vaishali P. Bakshi, Ph.D., and Mark A. Geyer, Ph.D. a In a recent study using Wistar rats, the serotonergic 5-HT2 1 receptor agonist cirazoline disrupts PPI. As risperidone a receptor antagonists ketanserin and risperidone reduced the and M100907 have affinity at the 1 receptor, a final study disruptive effects of the noncompetitive N-methyl-D- examined whether M100907 would block the effects of aspartate (NMDA) antagonist dizocilpine on prepulse cirazoline on PPI. Risperidone partially, but inhibition (PPI), suggesting that there is an interaction nonsignificantly, reduced the effects of dizocilpine in Wistar between serotonin and glutamate in the modulation of PPI. rats, although this effect was smaller than previously In contrast, studies using the noncompetitive NMDA reported. Consistent with previous studies, risperidone did antagonist phencyclidine (PCP) in Sprague–Dawley rats not alter the effects of dizocilpine in Sprague–Dawley rats. found no effect with 5-HT2 antagonists. To test the hypothesis Most importantly, M100907 pretreatment fully blocked the that strain differences might explain the discrepancy in effect of dizocilpine in both strains; whereas SDZ SER 082 these findings, risperidone was tested for its ability to had no effect. M100907 had no influence on PPI by itself reduce the PPI-disruptive effects of dizocilpine in Wistar and did not reduce the effects of cirazoline on PPI. These and Sprague–Dawley rats. Furthermore, to determine studies confirm the suggestion that serotonin and glutamate which serotonergic receptor subtype may mediate this effect, interact in modulating PPI and indicate that the 5-HT2A the 5-HT2A receptor antagonist M100907 (formerly MDL receptor subtype mediates this interaction. -
Early-Life Experience, Epigenetics, and the Developing Brain
Neuropsychopharmacology REVIEWS (2015) 40, 141–153 & 2015 American College of Neuropsychopharmacology. All rights reserved 0893-133X/15 REVIEW ............................................................................................................................................................... www.neuropsychopharmacologyreviews.org 141 Early-Life Experience, Epigenetics, and the Developing Brain 1 ,1 Marija Kundakovic and Frances A Champagne* 1Department of Psychology, Columbia University, New York, NY, USA Development is a dynamic process that involves interplay between genes and the environment. In mammals, the quality of the postnatal environment is shaped by parent–offspring interactions that promote growth and survival and can lead to divergent developmental trajectories with implications for later-life neurobiological and behavioral characteristics. Emerging evidence suggests that epigenetic factors (ie, DNA methylation, posttranslational histone modifications, and small non- coding RNAs) may have a critical role in these parental care effects. Although this evidence is drawn primarily from rodent studies, there is increasing support for these effects in humans. Through these molecular mechanisms, variation in risk of psychopathology may emerge, particularly as a consequence of early-life neglect and abuse. Here we will highlight evidence of dynamic epigenetic changes in the developing brain in response to variation in the quality of postnatal parent–offspring interactions. The recruitment of epigenetic pathways for the -
The Ethical, Legal and Social Implications of Pharmacogenomics in Developing Countries
The Ethical, Legal and Social Implications of Pharmacogenomics in Developing Countries Report of an International Group of Experts Human Genetics Chronic Diseases and Health Promotion WHO Library CataloguinginPublication Data The ethical, legal and social implications of pharmacogenomics in developing countries : report of an international group of experts. "Preparation of this report was undertaken by Human Genetics, headed by Victor Boulyjenkov. Cathy Schapper (Monash University) had principal responsibility for researching, writing and editing the report ..."Acknowledgements. 1.Pharmacogenetics ethics. 2.Pharmacogenetics legislation. 3.Ethics, Pharmacy. 4.Patient rights. 5.Socioeconomic factors. 6.Legislation, Drug. 7.Developing countries. I.Boulyjenkov, Victor. II.Schapper, Cathy. III.World Health Organization. ISBN 978 92 4 159546 9 (NLM classification: QV 38) © World Health Organization 2007 All rights reserved. Publications of the World Health Organization can be obtained from WHO Press, World Health Organization, 20 Avenue Appia, 1211 Geneva 27, Switzerland (tel.: +41 22 791 3264; fax: +41 22 791 4857; email: [email protected]). Requests for permission to reproduce or translate WHO publications – whether for sale or for noncommercial distribution – should be addressed to WHO Press, at the above address (fax: +41 22 791 4806; email: [email protected]). The designations employed and the presentation of the material in this publication do not imply the expression of any opinion whatsoever on the part of the World Health Organization concerning the legal status of any country, territory, city or area or of its authorities, or concerning the delimitation of its frontiers or boundaries. Dotted lines on maps represent approximate border lines for which there may not yet be full agreement. -
Pharmacogenomics to Predict Tumor Therapy Response: a Focus on ATP-Binding Cassette Transporters and Cytochromes P450
Journal of Personalized Medicine Review Pharmacogenomics to Predict Tumor Therapy Response: A Focus on ATP-Binding Cassette Transporters and Cytochromes P450 Viktor Hlaváˇc 1,2,* , Petr Holý 1,2,3 and Pavel Souˇcek 1,2 1 Toxicogenomics Unit, National Institute of Public Health, 100 00 Prague, Czech Republic; [email protected] (P.H.); [email protected] (P.S.) 2 Laboratory of Pharmacogenomics, Biomedical Center, Faculty of Medicine in Pilsen, Charles University, 306 05 Pilsen, Czech Republic 3 Third Faculty of Medicine, Charles University, 100 00 Prague, Czech Republic * Correspondence: [email protected]; Tel.: +420-267082681; Fax: +420-267311236 Received: 31 July 2020; Accepted: 26 August 2020; Published: 28 August 2020 Abstract: Pharmacogenomics is an evolving tool of precision medicine. Recently,due to the introduction of next-generation sequencing and projects generating “Big Data”, a plethora of new genetic variants in pharmacogenes have been discovered. Cancer resistance is a major complication often preventing successful anticancer treatments. Pharmacogenomics of both somatic mutations in tumor cells and germline variants may help optimize targeted treatments and improve the response to conventional oncological therapy. In addition, integrative approaches combining copy number variations and long noncoding RNA profiling with germline and somatic variations seem to be a promising approach as well. In pharmacology, expression and enzyme activity are traditionally the more studied aspects of ATP-binding cassette transporters and cytochromes P450. In this review, we briefly introduce the field of pharmacogenomics and the advancements driven by next-generation sequencing and outline the possible roles of genetic variation in the two large pharmacogene superfamilies. -
Mechanism of Action of Antidepressants and Mood Stabilizers
79 MECHANISM OF ACTION OF ANTIDEPRESSANTS AND MOOD STABILIZERS ROBERT H. LENOX ALAN FRAZER Bipolar disorder (BPD), the province of mood stabilizers, the more recent understanding that antidepressants share has long been considered a recurrent disorder. For more this property in UPD have focused research on long-term than 50 years, lithium, the prototypal mood stabilizer, has events, such as alterations in gene expression and neuroplas- been known to be effective not only in acute mania but ticity, that may play a significant role in stabilizing the clini- also in the prophylaxis of recurrent episodes of mania and cal course of an illness. In our view, behavioral improvement depression. By contrast, the preponderance of past research and stabilization stem from the acute pharmacologic effects in depression has focused on the major depressive episode of antidepressants and mood stabilizers; thus, both the acute and its acute treatment. It is only relatively recently that and longer-term pharmacologic effects of both classes of investigators have begun to address the recurrent nature of drugs are emphasized in this chapter. unipolar disorder (UPD) and the prophylactic use of long- term antidepressant treatment. Thus, it is timely that we address in a single chapter the most promising research rele- vant to the pharmacodynamics of both mood stabilizers and MOOD STABILIZERS antidepressants. As we have outlined in Fig. 79.1, it is possible to charac- The term mood stabilizer within the clinical setting is com- terize both the course and treatment of bipolar and unipolar monly used to refer to a class of drugs that treat BPD. -
Neuropsychopharmacology (2015) 40, 2853–2855 © 2015 American College of Neuropsychopharmacology
Neuropsychopharmacology (2015) 40, 2853–2855 © 2015 American College of Neuropsychopharmacology. All rights reserved 0893-133X/15 www.neuropsychopharmacology.org Commentary Neuropsychopharmacology: Reflections on 40 Volumes Alan Frazer*,1 1 Department of Pharmacology, University of Texas Health Science Center at San Antonio, San Antonio, Texas, USA Neuropsychopharmacology (2015) 40, 2853–2855; doi:10.1038/npp.2015.290 This issue completes volume 40 of Neuropsychopharmaco- methodology has not followed in concert with pre-clinical logy (NPP), with the first issue published in December, 1987. advances such that most efficacy studies still lump together This should be distinguished from our 40th anniversary; what are heterogeneous groups of patients. One might say for the first several years, issues were thin, months were how can we subdivide in the absence of biomarkers, which skipped, and multiple volumes were published per year. To do not exist? But one might also ask how can we hope to find commemorate this accomplishment, the editor-in-chief a biomarker among a group of patients that might have 3, 7, (Dr Carlezon) asked me as in-coming ACNP President to or 10 different pathologies, all leading to the same behavioral write a brief overview of my views on the developments in output. Talk about the chicken and the egg! our field over this time period, using highly cited articles Another theme that continues into the present is the time- published in NPP as a guide. dependent, downstream consequences of acute actions of Early on, two articles highlight themes that continue today. some type of psychotherapeutic drugs that correlate better One is the development of animal models for psychiatric with optimal clinical improvement. -
Pharmacogenomics: the Promise of Personalized Medicine for CNS Disorders
Neuropsychopharmacology REVIEWS (2009) 34, 159–172 & 2009 Nature Publishing Group All rights reserved 0893-133X/09 $30.00 REVIEW ............................................................................................................................................................... www.neuropsychopharmacology.org 159 Pharmacogenomics: The Promise of Personalized Medicine for CNS Disorders Jose de Leon*,1,2,3,4 1 2 Mental Health Research Center, Eastern State Hospital, University of Kentucky, Lexington, KY, USA; College of Medicine, 3 4 University of Kentucky, Lexington, KY, USA; College of Pharmacy, University of Kentucky, Lexington, KY, USA; Psychiatry and Neurosciences Research Group (CTS-549), Institute of Neurosciences, Medical School, University of Granada, Granada, Spain This review focuses first on the concept of pharmacogenomics and its related concepts (biomarkers and personalized prescription). Next, the first generation of five DNA pharmacogenomic tests used in the clinical practice of psychiatry is briefly reviewed. Then the possible involvement of these pharmacogenomic tests in the exploration of early clinical proof of mechanism is described by using two of the tests and one example from the pharmaceutical industry (iloperidone clinical trials). The initial attempts to use other microarray tests (measuring RNA expression) as peripheral biomarkers for CNS disorders are briefly described. Then the challenge of taking pharmacogenomic tests (compared to drugs) into clinical practice is explained by focusing on regulatory -
Before They Called It Psychopharmacology* Heinz E
NEUROPSYCHOPHARMACOLOGY 1993-VOL. 8, NO. 4 291 SPECIAL LECTURE Before They Called It Psychopharmacology* Heinz E. Lehmann, M.D. BEFORE THEY CALLED IT Johns Hopkins, who called the domain of psychophar PSYCHOPHARMACOLOGY macology "certainly very meager." Macht conducted pharmacologic experiments with opium narcotics and It is a great privilege and honor to be here today, giv coal tar analgesics on reaction time, tapping speed, etc., ing the second annual lecture on the history of psy much as Kraepelin as early as 1883 had done in Wundt's chopharmacology. My friend Frank Ayd did such an laboratory with alcohol and caffeine, calling it then Phar admirable job with his lecture last year, on the early macopsychologie (Macht 1920). history, that I have had a hard problem finding gaps W. Freeman, in 1931, wrote a more general paper to fill. What I have finally chosen to do is to trace for in the Journal of the American Medical Association on you some of the early history, complete with anecdotes, what he called psychochemistry, and in 1935 Thorner which preceded our modern notions of psychology and wrote the fIrst paper resembling our modern concept pharmacology and then to tell you something of my of the term with "Psychopharmacology of Sodium own experiences and findings in the psychiatric world Amytal in Catatonia." I will discuss this paper in more of the 1940s and 1950s, a world that was remarkably detail later . After a careful search of the modern litera different and simplistic compared to today. I also in ture, I came to the conclusion that official general use tend to give you a subjective "oral history" of my own of the term psychopharmacology in publications dates stumbling attempts to make some sense out of the only to 1960, following a paper by Ross and Cole enti vague and somewhat chaotic potpourri of ideas and tled "Psychopharmacology," when also psychophar pharmacologic approaches to psychiatric problems a macology appears for the fIrst time as a free-standing half century ago. -
Pharmacogenomics—Is There a Role in Antibiotic Therapy?
Pharmacogenomics—a role in antibiotic therapy? DB Davison et al 14 sist over long periods of time, and they there are inborn cohesive forces 1 Pinker S. How the Mind Works. WW Nor- cannot grow except by recruitment. which cause the different individ- ton & Company: New York, London, 1997, pp 1–528. In short, populations differ from uals within a population to coop- 2 Wynne Edwards WC. Evolution through each other because many of their erate sufficiently for the popu- group selection. Blackwell: Oxford, 1986. members tend to carry different lation to function as one 3 Wilson DS. Proc Nat Acad Sci USA 1975; 72: mutants; furthermore, it is the non- evolutionary unit. 143–146. 4 Wilson DS. Science 1997; 276: 1816–1817. uniformity of the individual members (2) As a second requirement, there 5 Wilson DS, Sober E. J Theor Biol 1989; 136: of a population which helps a popu- must be effective evolutionary dif- 337–356. lation to function as an effective ferences between individuals 6 Rice SH. J Theor Biol 1995; 177: 237–245. entity, and thereby to allow evolution- which at the same time make 7 Crognier E. Ann Hum Biol 2000; 27: 221– 237. ary competition. The situation is anal- every population different from 8 Michod RE, Roze D. Heredity 2001; 86:1–7. ogous to that of a complex organism other populations. The existence 9 Hamilton WD. J Theor Biol 1964; 7:1–52. which has different cells, but they col- of mutations assures the occur- 10 Maynard Smith J. Evolutionary Genetics (2nd laborate and form a living unit.