Analysis of Cysteine Cathepsin Knockout Mice in Cancer Models
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Supplementary Data
Supplementary Data for Quantitative Changes in the Mitochondrial Proteome from Subjects with Mild Cognitive Impairment, Early Stage and Late Stage Alzheimer’s disease Table 1 - 112 unique, non-redundant proteins identified and quantified in at least two of the three analytical replicates for all three disease stages. Table 2 - MCI mitochondrial samples, Protein Summary Table 3 - MCI mitochondrial samples, Experiment 1 Table 4 - MCI mitochondrial samples, Experiment 2 Table 5 - MCI mitochondrial samples, Experiment 3 Table 6 - EAD Mitochondrial Study, Protein Summary Table 7 - EAD Mitochondrial Study, Experiment 1 Table 8 - EAD Mitochondrial Study, Experiment 2 Table 9 - EAD Mitochondrial Study, Experiment 3 Table 10 - LAD Mitochondrial Study, Protein Summary Table 11 - LAD Mitochondrial Study, Experiment 1 Table 12 - LAD Mitochondrial Study, Experiment 2 Table 13 - LAD Mitochondrial Study, Experiment 3 Supplemental Table 1. 112 unique, non-redundant proteins identified and quantified in at least two of the three analytical replicates for all three disease stages. Description Data MCI EAD LAD AATM_HUMAN (P00505) Aspartate aminotransferase, mitochondrial precursor (EC Mean 1.43 1.70 1.31 2.6.1.1) (Transaminase A) (Glutamate oxaloacetate transaminase 2) [MASS=47475] SEM 0.07 0.09 0.09 Count 3.00 3.00 3.00 ACON_HUMAN (Q99798) Aconitate hydratase, mitochondrial precursor (EC 4.2.1.3) Mean 1.24 1.61 1.19 (Citrate hydro-lyase) (Aconitase) [MASS=85425] SEM 0.05 0.17 0.18 Count 3.00 2.00 3.00 ACPM_HUMAN (O14561) Acyl carrier protein, mitochondrial -
Alimentary Tract Proteinases of the Southern Corn
Durham E-Theses Alimentary tract proteinases of the Southern corn rootworm (Diabrotica undecimpunctata howardi) and the potential of potato Kunitz proteinase inhibitors for larval control. Macgregor, James Mylne How to cite: Macgregor, James Mylne (2001) Alimentary tract proteinases of the Southern corn rootworm (Diabrotica undecimpunctata howardi) and the potential of potato Kunitz proteinase inhibitors for larval control., Durham theses, Durham University. Available at Durham E-Theses Online: http://etheses.dur.ac.uk/3808/ Use policy The full-text may be used and/or reproduced, and given to third parties in any format or medium, without prior permission or charge, for personal research or study, educational, or not-for-prot purposes provided that: • a full bibliographic reference is made to the original source • a link is made to the metadata record in Durham E-Theses • the full-text is not changed in any way The full-text must not be sold in any format or medium without the formal permission of the copyright holders. Please consult the full Durham E-Theses policy for further details. Academic Support Oce, Durham University, University Oce, Old Elvet, Durham DH1 3HP e-mail: [email protected] Tel: +44 0191 334 6107 http://etheses.dur.ac.uk 2 Alimentary tract proteinases of the Southern corn rootworm (Diabrotica undecimpunctata howardi) and the potential of potato Kunitz proteinase inhibitors for larval control. The copyright of this thesis rests with the author. No quotation from it should be published without his prior written consent and information derived from it should be acknowledged. A thesis submitted by James Mylne Macgregor B.Sc. -
Data Sheet Cathepsin V Inhibitor Screening Assay Kit Catalog #79589 Size: 96 Reactions
6405 Mira Mesa Blvd Ste. 100 San Diego, CA 92121 Tel: 1.858.202.1401 Fax: 1.858.481.8694 Email: [email protected] Data Sheet Cathepsin V Inhibitor Screening Assay Kit Catalog #79589 Size: 96 reactions BACKGROUND: Cathepsin V, also called Cathepsin L2, is a lysosomal cysteine endopeptidase with high sequence homology to cathepsin L and other members of the papain superfamily of cysteine proteinases. Its expression is regulated in a tissue-specific manner and is high in thymus, testis and cornea. Expression analysis of cathepsin V in human tumors revealed widespread expression in colorectal and breast carcinomas, suggesting a possible role in tumor processes. DESCRIPTION: The Cathepsin V Inhibitor Screening Assay Kit is designed to measure the protease activity of Cathepsin V for screening and profiling applications. The Cathepsin V assay kit comes in a convenient 96-well format, with purified Cathepsin V, its fluorogenic substrate, and Cathepsin buffer for 100 enzyme reactions. In addition, the kit includes the cathepsin inhibitor E- 64 for use as a control inhibitor. COMPONENTS: Catalog # Component Amount Storage 80009 Cathepsin V 10 µg -80 °C Fluorogenic Cathepsin Avoid 80349 Substrate 1 (5 mM) 10 µl -20 °C multiple *4X Cathepsin buffer 2 ml -20 °C freeze/thaw E-64 (1 mM) 10 µl -20 °C cycles! 96-well black microplate * Add 120 µl of 0.5 M DTT before use. MATERIALS OR INSTRUMENTS REQUIRED BUT NOT SUPPLIED: 0.5 M DTT in aqueous solution Adjustable micropipettor and sterile tips Fluorescent microplate reader APPLICATIONS: Great for studying enzyme kinetics and screening small molecular inhibitors for drug discovery and HTS applications. -
Serine Proteases with Altered Sensitivity to Activity-Modulating
(19) & (11) EP 2 045 321 A2 (12) EUROPEAN PATENT APPLICATION (43) Date of publication: (51) Int Cl.: 08.04.2009 Bulletin 2009/15 C12N 9/00 (2006.01) C12N 15/00 (2006.01) C12Q 1/37 (2006.01) (21) Application number: 09150549.5 (22) Date of filing: 26.05.2006 (84) Designated Contracting States: • Haupts, Ulrich AT BE BG CH CY CZ DE DK EE ES FI FR GB GR 51519 Odenthal (DE) HU IE IS IT LI LT LU LV MC NL PL PT RO SE SI • Coco, Wayne SK TR 50737 Köln (DE) •Tebbe, Jan (30) Priority: 27.05.2005 EP 05104543 50733 Köln (DE) • Votsmeier, Christian (62) Document number(s) of the earlier application(s) in 50259 Pulheim (DE) accordance with Art. 76 EPC: • Scheidig, Andreas 06763303.2 / 1 883 696 50823 Köln (DE) (71) Applicant: Direvo Biotech AG (74) Representative: von Kreisler Selting Werner 50829 Köln (DE) Patentanwälte P.O. Box 10 22 41 (72) Inventors: 50462 Köln (DE) • Koltermann, André 82057 Icking (DE) Remarks: • Kettling, Ulrich This application was filed on 14-01-2009 as a 81477 München (DE) divisional application to the application mentioned under INID code 62. (54) Serine proteases with altered sensitivity to activity-modulating substances (57) The present invention provides variants of ser- screening of the library in the presence of one or several ine proteases of the S1 class with altered sensitivity to activity-modulating substances, selection of variants with one or more activity-modulating substances. A method altered sensitivity to one or several activity-modulating for the generation of such proteases is disclosed, com- substances and isolation of those polynucleotide se- prising the provision of a protease library encoding poly- quences that encode for the selected variants. -
Sdouglas Cathepsin
CATHEPSIN-MEDIATED FIBRIN(OGEN)OLYSIS IN ENGINEERED MICROVASCULAR NETWORKS AND CHRONIC COAGULATION IN SICKLE CELL DISEASE A Dissertation Presented to The Academic Faculty by Simone Andrea Douglas In Partial Fulfillment of the Requirements for the Degree Doctor of Philosophy in the School of Wallace H. Coulter Department of Biomedical Engineering Georgia Institute of Technology and Emory University August 2020 COPYRIGHT © 2020 BY SIMONE A. DOUGLAS CATHEPSIN-MEDIATED FIBRIN(OGEN)OLYSIS IN ENGINEERED MICROVASCULAR NETWORKS AND CHRONIC COAGULATION IN SICKLE CELL DISEASE Approved by: Dr. Manu O. Platt, Advisor Dr. Clint Joiner Department of Biomedical Engineering Department of Pediatrics, Division of Georgia Institute of Technology Hematology/Oncology Emory University School of Medicine Dr. Rodney Averett Dr. Roger Kamm School of Mechanical Engineering Department of Mechanical Engineering University of Georgia & Department of Biological Engineering Massachusetts Institute of Technology Dr. Edward Botchwey Dr. Johnna Temenoff Department of Biomedical Engineering Department of Biomedical Engineering Georgia Institute of Technology Georgia Institute of Technology Date Approved: April 24, 2020 For Mom and Dad And to the people of Jamaica “Out of Many, One People” One Love. ACKNOWLEDGEMENTS I would like to start by acknowledging my PhD Advisor, Dr. Manu Platt. I owe a lot of my growth as a person and scientist over the past five years to him. Dr. Platt has challenged me, pushing me out of my comfort zone and encouraging me to grow far beyond what I thought I was capable of. Through Dr. Platt’s encouragement I was lucky to have many opportunities and experiences in graduate school- international travel, earning travel and poster presentation awards, mentoring Project ENGAGES scholars and REU students, serving as a lead volunteer for BME graduate recruitment, mentoring ESTEEMED scholars in the summer bridge program, and attending events to support the Sickle Cell Foundation of Georgia. -
Felipe Jun Fuzita Molecular Physiology of Digestion In
FELIPE JUN FUZITA MOLECULAR PHYSIOLOGY OF DIGESTION IN ARACHNIDA: FUNCTIONAL AND COMPARATIVE-EVOLUTIONARY APPROACHES Thesis presented to the Programa de Pós-Graduação Interunidades em Biotecnologia USP/Instituto Butantan/IPT, to obtain the Title of Doctor in Biotechnology. São Paulo 2014 FELIPE JUN FUZITA MOLECULAR PHYSIOLOGY OF DIGESTION IN ARACHNIDA: FUNCTIONAL AND COMPARATIVE-EVOLUTIONARY APPROACHES Thesis presented to the Programa de Pós-Graduação Interunidades em Biotecnologia USP/Instituto Butantan/IPT, to obtain the Title of Doctor in Biotechnology. Concentration area: Biotechnology Advisor: Dr. Adriana Rios Lopes Rocha Corrected version. The original electronic version is available either in the library of the Institute of Biomedical Sciences and in the Digital Library of Theses and Dissertations of the University of Sao Paulo (BDTD). São Paulo 2014 DADOS DE CATALOGAÇÃO NA PUBLICAÇÃO (CIP) Serviço de Biblioteca e Informação Biomédica do Instituto de Ciências Biomédicas da Universidade de São Paulo © reprodução total Fuzita, Felipe Jun. Molecular physiology of digestion in Arachnida: functional and comparative-evolutionary approaches / Felipe Jun Fuzita. -- São Paulo, 2014. Orientador: Profa. Dra. Adriana Rios Lopes Rocha. Tese (Doutorado) – Universidade de São Paulo. Instituto de Ciências Biomédicas. Programa de Pós-Graduação Interunidades em Biotecnologia USP/IPT/Instituto Butantan. Área de concentração: Biotecnologia. Linha de pesquisa: Bioquímica, biologia molecular, espectrometria de massa. Versão do título para o português: Fisiologia molecular da digestão em Arachnida: abordagens funcional e comparativo-evolutiva. 1. Digestão 2. Aranha 3. Escorpião 4. Enzimologia 5. Proteoma 6. Transcriptoma I. Rocha, Profa. Dra. Adriana Rios Lopes I. Universidade de São Paulo. Instituto de Ciências Biomédicas. Programa de Pós-Graduação Interunidades em Biotecnologia USP/IPT/Instituto Butantan III. -
Crystal Structure of Cathepsin X: a Flip–Flop of the Ring of His23
st8308.qxd 03/22/2000 11:36 Page 305 Research Article 305 Crystal structure of cathepsin X: a flip–flop of the ring of His23 allows carboxy-monopeptidase and carboxy-dipeptidase activity of the protease Gregor Guncar1, Ivica Klemencic1, Boris Turk1, Vito Turk1, Adriana Karaoglanovic-Carmona2, Luiz Juliano2 and Dušan Turk1* Background: Cathepsin X is a widespread, abundantly expressed papain-like Addresses: 1Department of Biochemistry and v mammalian lysosomal cysteine protease. It exhibits carboxy-monopeptidase as Molecular Biology, Jozef Stefan Institute, Jamova 39, 1000 Ljubljana, Slovenia and 2Departamento de well as carboxy-dipeptidase activity and shares a similar activity profile with Biofisica, Escola Paulista de Medicina, Rua Tres de cathepsin B. The latter has been implicated in normal physiological events as Maio 100, 04044-020 Sao Paulo, Brazil. well as in various pathological states such as rheumatoid arthritis, Alzheimer’s disease and cancer progression. Thus the question is raised as to which of the *Corresponding author. E-mail: [email protected] two enzyme activities has actually been monitored. Key words: Alzheimer’s disease, carboxypeptidase, Results: The crystal structure of human cathepsin X has been determined at cathepsin B, cathepsin X, papain-like cysteine 2.67 Å resolution. The structure shares the common features of a papain-like protease enzyme fold, but with a unique active site. The most pronounced feature of the Received: 1 November 1999 cathepsin X structure is the mini-loop that includes a short three-residue Revisions requested: 8 December 1999 insertion protruding into the active site of the protease. The residue Tyr27 on Revisions received: 6 January 2000 one side of the loop forms the surface of the S1 substrate-binding site, and Accepted: 7 January 2000 His23 on the other side modulates both carboxy-monopeptidase as well as Published: 29 February 2000 carboxy-dipeptidase activity of the enzyme by binding the C-terminal carboxyl group of a substrate in two different sidechain conformations. -
United States Patent (10) Patent N0.: US 7,056,947 B2 Powers Et A]
US007056947B2 (12) United States Patent (10) Patent N0.: US 7,056,947 B2 Powers et a]. (45) Date of Patent: Jun. 6, 2006 (54) AZA-PEPTIDE EPOXIDES 5,998,470 A * 12/1999 Halbert e161. ............ .. 514/482 6,331,542 B1 * 12/2001 Carr et a1. ............. .. 514/2378 (75) Inventors: James C. Powers, Atlanta, GA (US); 6,376,468 B1 4/2002 Overkleeft et a1. Juliana L. Asgian, Fullerton, CA (US); 6,387,908 B1 5/2002 Nomura et a1. Karen E. James, Cumming, GA (US); 6,462,078 B1 * 10/2002 Ono et a1. ................ .. 514/475 Zhao-Zhao Li, Norcross, GA (US) 6,479,676 B1 11/2002 Wolf 6,586,466 Bl* 7/2003 Yamashita ................ .. 5l4/483 (73) Assigneei Georgia Tech Research C0rp-, Atlanta, 6,689,765 B1 * 2/2004 Baroudy et a1. ............ .. 514/63 GA (Us) 6,831,099 B1* 12/2004 Crews e161. ............. .. 514/475 ( * ) Notice: Subject to any disclaimer, the term of this patent is extended or adjusted under 35 OTHER PUBLICATIONS USC‘ 1540’) by 309 days‘ Kidwai et al, CA 125; 33462, 1996* (21) Appl. No.: 10/603,054 * Cited by examiner (22) Filed; Jun- 24, 2003 Primary ExamineriDeborah C. Lambkin _ _ _ (74) Attorney, Agent, or F irmiThomas, Kayden, (65) Pnor Pubhcatlon Data Horstemeyer & Risley LLP; Todd Deveau US 2004/0048327 A1 Mar. 11, 2004 (57) ABSTRACT Related US. Application Data (60) Provisional application No. 60/394,221, ?led on Jul. _ _ _ _ _ _ _ _ _ 5’ 2002’ provisional application NO_ 60/394,023’ ?led The present 1nvent1on prov1des compos1t1ons for 1nh1b1t1ng on ]u1_ 5’ 2002, provisional application NO 60/394, proteases, methods for synthesizing the compositions, and 024, ?led on Jul, 5, 2002, methods of using the disclosed protease inhibitors. -
Inhibition of Mitochondrial Complex II in Neuronal Cells Triggers Unique
www.nature.com/scientificreports OPEN Inhibition of mitochondrial complex II in neuronal cells triggers unique pathways culminating in autophagy with implications for neurodegeneration Sathyanarayanan Ranganayaki1, Neema Jamshidi2, Mohamad Aiyaz3, Santhosh‑Kumar Rashmi4, Narayanappa Gayathri4, Pulleri Kandi Harsha5, Balasundaram Padmanabhan6 & Muchukunte Mukunda Srinivas Bharath7* Mitochondrial dysfunction and neurodegeneration underlie movement disorders such as Parkinson’s disease, Huntington’s disease and Manganism among others. As a corollary, inhibition of mitochondrial complex I (CI) and complex II (CII) by toxins 1‑methyl‑4‑phenylpyridinium (MPP+) and 3‑nitropropionic acid (3‑NPA) respectively, induced degenerative changes noted in such neurodegenerative diseases. We aimed to unravel the down‑stream pathways associated with CII inhibition and compared with CI inhibition and the Manganese (Mn) neurotoxicity. Genome‑wide transcriptomics of N27 neuronal cells exposed to 3‑NPA, compared with MPP+ and Mn revealed varied transcriptomic profle. Along with mitochondrial and synaptic pathways, Autophagy was the predominant pathway diferentially regulated in the 3‑NPA model with implications for neuronal survival. This pathway was unique to 3‑NPA, as substantiated by in silico modelling of the three toxins. Morphological and biochemical validation of autophagy markers in the cell model of 3‑NPA revealed incomplete autophagy mediated by mechanistic Target of Rapamycin Complex 2 (mTORC2) pathway. Interestingly, Brain Derived Neurotrophic Factor -
Deficiency for the Cysteine Protease Cathepsin L Promotes Tumor
Oncogene (2010) 29, 1611–1621 & 2010 Macmillan Publishers Limited All rights reserved 0950-9232/10 $32.00 www.nature.com/onc ORIGINAL ARTICLE Deficiency for the cysteine protease cathepsin L promotes tumor progression in mouse epidermis J Dennema¨rker1,6, T Lohmu¨ller1,6, J Mayerle2, M Tacke1, MM Lerch2, LM Coussens3,4, C Peters1,5 and T Reinheckel1,5 1Institute for Molecular Medicine and Cell Research, Albert-Ludwigs-University Freiburg, Freiburg, Germany; 2Department of Gastroenterology, Endocrinology and Nutrition, Ernst-Moritz-Arndt University Greifswald, Greifswald, Germany; 3Department of Pathology, University of California, San Francisco, CA, USA; 4Helen Diller Family Comprehensive Cancer Center, University of California, San Francisco, CA, USA and 5Ludwig Heilmeyer Comprehensive Cancer Center and Centre for Biological Signalling Studies, Albert-Ludwigs-University Freiburg, Freiburg, Germany To define a functional role for the endosomal/lysosomal Introduction cysteine protease cathepsin L (Ctsl) during squamous carcinogenesis, we generated mice harboring a constitutive Proteases have traditionally been thought to promote Ctsl deficiency in addition to epithelial expression of the invasive growth of carcinomas, contributing to the the human papillomavirus type 16 oncogenes (human spread and homing of metastasizing cancer cells (Dano cytokeratin 14 (K14)–HPV16). We found enhanced tumor et al., 1999). Proteases that function outside tumor cells progression and metastasis in the absence of Ctsl. As have been implicated in these processes because of their tumor progression in K14–HPV16 mice is dependent well-established release from tumors, causing the break- on inflammation and angiogenesis, we examined immune down of basement membranes and extracellular matrix. cell infiltration and vascularization without finding any Thus, extracellular proteases may in part facilitate effect of the Ctsl genotype. -
Untersuchung Zur Selektivität Der Hemmung Von Cathepsin L-Ähnlichen Cysteinproteasen Durch Die Dazugehörigen Propeptide
Untersuchung zur Selektivität der Hemmung von Cathepsin L-ähnlichen Cysteinproteasen durch die dazugehörigen Propeptide Dissertation zur Erlangung des akademischen Grades doctor medicinae dentariae (Dr. med. dent.) vorgelegt dem Rat der Medizinischen Fakultät der Friedrich-Schiller-Universität Jena von Yvonne Benedix, geboren am 05. Februar 1979 in Karl-Marx-Stadt Gutachter 1 Gutachter 2 Gutachter 3 Tag der öffentlichen Verteidigung Inhaltsverzeichnis 3 Abkürzungsverzeichnis 5 Zusammenfassung 7 1. Einleitung 9 2. Materialien und Methodik 16 2.1. Materialien 16 2.1.1. Antibiotika, Chemikalien, Enzyme, Standards und Substrate 16 2.1.2. Kits zur Bearbeitung von DNA 17 2.1.3. Verwendete Vektoren und Bakterienstämme 17 2.1.4. Geräte 18 2.1.5. Spezielle Computerprogramme 19 2.2. Molekularbiologische Methoden 19 2.2.1. Amplifizierung der Proregionen von Cathepsin H und L 19 mittels PCR 2.2.2. DNA-Trennung im Agarosegel und Extraktion 21 2.2.3. Klonierung, Ligation, Transformation und DNA-Isolierung 21 2.2.4. DNA-Seqzenzanalyse 25 2.3. Proteinchemische Methoden 26 2.3.1. Expression und Reinigung der rekombinanten Propeptide 26 2.3.2. Reinigung der Einschlusskörperchen durch Saccharose- Dichtegradientenzentrifugation 27 2.3.3. Endreinigung des Propeptids durch Gelfiltration 28 2.3.4. Charakterisierung der rekombinanten Propeptide 29 2.3.5. Massenspektrometrie durch MALDI-TOF 31 2.4. Kinetische Messung 31 2.4.1. Testdurchführung 31 2.4.2. Bestimmung des KM-Wertes 33 2.4.3. Bestimmung der Inhibitionskonstanten Ki und koff 34 3. Ergebnisse 37 3.1. Herstellung der Propeptide von Cathepsin H (kurz), Cathepsin H (lang) und Cathepsin L 37 3.1.1. -
Reticulum Mainly Localized in the Endoplasmic Predominantly
Human Cathepsin W, a Cysteine Protease Predominantly Expressed in NK Cells, Is Mainly Localized in the Endoplasmic Reticulum This information is current as of September 24, 2021. Thomas Wex, Frank Bühling, Heike Wex, Dagmar Günther, Peter Malfertheiner, Ekkehard Weber and Dieter Brömme J Immunol 2001; 167:2172-2178; ; doi: 10.4049/jimmunol.167.4.2172 http://www.jimmunol.org/content/167/4/2172 Downloaded from References This article cites 44 articles, 18 of which you can access for free at: http://www.jimmunol.org/content/167/4/2172.full#ref-list-1 http://www.jimmunol.org/ Why The JI? Submit online. • Rapid Reviews! 30 days* from submission to initial decision • No Triage! Every submission reviewed by practicing scientists • Fast Publication! 4 weeks from acceptance to publication by guest on September 24, 2021 *average Subscription Information about subscribing to The Journal of Immunology is online at: http://jimmunol.org/subscription Permissions Submit copyright permission requests at: http://www.aai.org/About/Publications/JI/copyright.html Email Alerts Receive free email-alerts when new articles cite this article. Sign up at: http://jimmunol.org/alerts The Journal of Immunology is published twice each month by The American Association of Immunologists, Inc., 1451 Rockville Pike, Suite 650, Rockville, MD 20852 Copyright © 2001 by The American Association of Immunologists All rights reserved. Print ISSN: 0022-1767 Online ISSN: 1550-6606. Human Cathepsin W, a Cysteine Protease Predominantly Expressed in NK Cells, Is Mainly Localized in the Endoplasmic Reticulum1 Thomas Wex,2,3*† Frank Bu¨hling,2§ Heike Wex,*‡ Dagmar Gu¨nther,¶ Peter Malfertheiner,† Ekkehard Weber,¶ and Dieter Bro¨mme3* Human cathepsin W (also called lymphopain) is a recently described papain-like cysteine protease of unknown function whose gene expression was found to be restricted to cytotoxic cells.