bioRxiv preprint doi: https://doi.org/10.1101/262816; this version posted July 11, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. First nuclear genome assembly of an extinct moa species, the little bush moa (Anomalopteryx didiformis) Alison Cloutier1,2*, Timothy B. Sackton3, Phil Grayson1,2, Scott V. Edwards1,2, Allan J. Baker4,5¶ 1Department of Organismic and Evolutionary Biology, Harvard University, 26 Oxford Street, Cambridge MA, 02138 USA 2Museum of Comparative Zoology, Harvard University, 26 Oxford Street, Cambridge MA, 02138 USA 3Informatics Group, Harvard University, 38 Oxford Street, Cambridge MA, 02138 USA 4Department of Ecology and Evolutionary Biology, University of Toronto, 25 Willcox Street, Toronto ON, M5S 3B2 Canada 5Department of Natural History, Royal Ontario Museum, 100 Queen’s Park, Toronto ON, M5S 2C6 Canada ¶Deceased *Corresponding author:
[email protected] 1 bioRxiv preprint doi: https://doi.org/10.1101/262816; this version posted July 11, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. ABSTRACT High throughput sequencing (HTS) has revolutionized the field of ancient DNA (aDNA) by facilitating recovery of nuclear DNA for greater inference of evolutionary processes in extinct species than is possible from mitochondrial DNA alone. We used HTS to obtain ancient DNA from the little bush moa (Anomalopteryx didiformis), one of the iconic species of large, flightless birds that became extinct following human settlement of New Zealand in the 13th century.