Cuckoo Ray Leucoraja Naevus
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The Evolutionary Origins of Vertebrate Haematopoiesis: Insights from Non-Vertebrate Chordates
THE EVOLUTIONARY ORIGINS OF VERTEBRATE HAEMATOPOIESIS: INSIGHTS FROM NON-VERTEBRATE CHORDATES A thesis submitted to the University of Manchester for the degree of MPhil Evolutionary Biology in the Faculty of Life Sciences. 2015 PETER E D MILLS 2 LIST OF CONTENTS List of Contents 2 List of Figures 4 List of Abbreviations 5 Abstract 6 Declaration 7 Copyright Statement 7 Introduction 8 Haematopoiesis 11 In gnathostomes 11 In cyclostomes 18 In ascidians 20 In amphioxi 22 In sea urchins 24 In fruit flies 24 The evolution of haematopoiesis 26 Haematopoiesis and innate immune cells 26 Lymphocytes 26 Erythrocytes 27 Aims 28 The basic aim 28 Choice of genes 30 Homologue identification 31 Analysis of EST collections 31 In situ hybridisations 32 gata1/2/3 rescue experiment 34 gata1/2/3 reporter experiment 36 3 Methods 39 Homologue identification 39 Analysis of EST data 39 Collection of amphioxus embryos 40 Collection of ascidian embryos 40 Collection of zebrafish embryos 40 Cloning genes 41 Whole mount in situ hybridisations 41 Knockdown and rescue of gata1 42 gata1/2/3:mCherry reporter 42 Results Homologues in non-gnathostomes 44 Gene expression in ascidian and amphioxus embryos 48 Knockdown of gata1 and rescue with gata1/2/3 51 gata1/2/3:mCherry reporter expression 52 Discussion Non-chordate gene expression 54 Amphioxus gene expression 54 Ascidian gene expression 56 Cyclostome gene expression 59 gata1/2/3 rescue experiment 60 gata1/2/3 reporter experiment 62 Evolution of erythrocytes 63 Evolution of lymphocytes 67 Conclusion 72 References 75 (Word count: 26,246) 4 LIST OF FIGURES Figure 1 – Phylogenetic relationships between the organisms studied in this thesis. -
Sharks in Crisis: a Call to Action for the Mediterranean
REPORT 2019 SHARKS IN CRISIS: A CALL TO ACTION FOR THE MEDITERRANEAN WWF Sharks in the Mediterranean 2019 | 1 fp SECTION 1 ACKNOWLEDGEMENTS Written and edited by WWF Mediterranean Marine Initiative / Evan Jeffries (www.swim2birds.co.uk), based on data contained in: Bartolí, A., Polti, S., Niedermüller, S.K. & García, R. 2018. Sharks in the Mediterranean: A review of the literature on the current state of scientific knowledge, conservation measures and management policies and instruments. Design by Catherine Perry (www.swim2birds.co.uk) Front cover photo: Blue shark (Prionace glauca) © Joost van Uffelen / WWF References and sources are available online at www.wwfmmi.org Published in July 2019 by WWF – World Wide Fund For Nature Any reproduction in full or in part must mention the title and credit the WWF Mediterranean Marine Initiative as the copyright owner. © Text 2019 WWF. All rights reserved. Our thanks go to the following people for their invaluable comments and contributions to this report: Fabrizio Serena, Monica Barone, Adi Barash (M.E.C.O.), Ioannis Giovos (iSea), Pamela Mason (SharkLab Malta), Ali Hood (Sharktrust), Matthieu Lapinksi (AILERONS association), Sandrine Polti, Alex Bartoli, Raul Garcia, Alessandro Buzzi, Giulia Prato, Jose Luis Garcia Varas, Ayse Oruc, Danijel Kanski, Antigoni Foutsi, Théa Jacob, Sofiane Mahjoub, Sarah Fagnani, Heike Zidowitz, Philipp Kanstinger, Andy Cornish and Marco Costantini. Special acknowledgements go to WWF-Spain for funding this report. KEY CONTACTS Giuseppe Di Carlo Director WWF Mediterranean Marine Initiative Email: [email protected] Simone Niedermueller Mediterranean Shark expert Email: [email protected] Stefania Campogianni Communications manager WWF Mediterranean Marine Initiative Email: [email protected] WWF is one of the world’s largest and most respected independent conservation organizations, with more than 5 million supporters and a global network active in over 100 countries. -
Extinction Risk and Conservation of the World's Sharks and Rays
RESEARCH ARTICLE elife.elifesciences.org Extinction risk and conservation of the world’s sharks and rays Nicholas K Dulvy1,2*, Sarah L Fowler3, John A Musick4, Rachel D Cavanagh5, Peter M Kyne6, Lucy R Harrison1,2, John K Carlson7, Lindsay NK Davidson1,2, Sonja V Fordham8, Malcolm P Francis9, Caroline M Pollock10, Colin A Simpfendorfer11,12, George H Burgess13, Kent E Carpenter14,15, Leonard JV Compagno16, David A Ebert17, Claudine Gibson3, Michelle R Heupel18, Suzanne R Livingstone19, Jonnell C Sanciangco14,15, John D Stevens20, Sarah Valenti3, William T White20 1IUCN Species Survival Commission Shark Specialist Group, Department of Biological Sciences, Simon Fraser University, Burnaby, Canada; 2Earth to Ocean Research Group, Department of Biological Sciences, Simon Fraser University, Burnaby, Canada; 3IUCN Species Survival Commission Shark Specialist Group, NatureBureau International, Newbury, United Kingdom; 4Virginia Institute of Marine Science, College of William and Mary, Gloucester Point, United States; 5British Antarctic Survey, Natural Environment Research Council, Cambridge, United Kingdom; 6Research Institute for the Environment and Livelihoods, Charles Darwin University, Darwin, Australia; 7Southeast Fisheries Science Center, NOAA/National Marine Fisheries Service, Panama City, United States; 8Shark Advocates International, The Ocean Foundation, Washington, DC, United States; 9National Institute of Water and Atmospheric Research, Wellington, New Zealand; 10Global Species Programme, International Union for the Conservation -
Skates and Rays Diversity, Exploration and Conservation – Case-Study of the Thornback Ray, Raja Clavata
UNIVERSIDADE DE LISBOA FACULDADE DE CIÊNCIAS DEPARTAMENTO DE BIOLOGIA ANIMAL SKATES AND RAYS DIVERSITY, EXPLORATION AND CONSERVATION – CASE-STUDY OF THE THORNBACK RAY, RAJA CLAVATA Bárbara Marques Serra Pereira Doutoramento em Ciências do Mar 2010 UNIVERSIDADE DE LISBOA FACULDADE DE CIÊNCIAS DEPARTAMENTO DE BIOLOGIA ANIMAL SKATES AND RAYS DIVERSITY, EXPLORATION AND CONSERVATION – CASE-STUDY OF THE THORNBACK RAY, RAJA CLAVATA Bárbara Marques Serra Pereira Tese orientada por Professor Auxiliar com Agregação Leonel Serrano Gordo e Investigadora Auxiliar Ivone Figueiredo Doutoramento em Ciências do Mar 2010 The research reported in this thesis was carried out at the Instituto de Investigação das Pescas e do Mar (IPIMAR - INRB), Unidade de Recursos Marinhos e Sustentabilidade. This research was funded by Fundação para a Ciência e a Tecnologia (FCT) through a PhD grant (SFRH/BD/23777/2005) and the research project EU Data Collection/DCR (PNAB). Skates and rays diversity, exploration and conservation | Table of Contents Table of Contents List of Figures ............................................................................................................................. i List of Tables ............................................................................................................................. v List of Abbreviations ............................................................................................................. viii Agradecimentos ........................................................................................................................ -
A Practical Guide to Effective Design and Management of Mpas For
A PRACTICAL GUIDE TO THE REPORT EFFECTIVE DESIGN AND 2019 MANAGEMENT OF MPAs FOR SHARKS AND RAYS This project has been a collaboration between the Centre LEAD AUTHOR: for Sustainable Tropical Fisheries and Aquaculture Cassandra L Rigby, James Cook (CSTFA) at James Cook University, Australia, and WWF. University ABOUT WWF AUTHORS: WWF is one of the largest and most experienced Colin Simpendorfer, James Cook independent conservation organizations, with over University 5 million supporters and a global network active in Andy Cornish, WWF-Hong Kong more than 100 countries. WWF´s mission is to stop the degradation of the planet´s natural environment and to build a future in which humans live in harmony with HOW TO CITE THIS WORK: nature, by conserving the world´s biological diversity, Rigby, C.L., Simpfendorfer, C.A. ensuring that the use of renewable resources is and A. Cornish (2019) A Practical sustainable, and promoting the reduction of pollution Guide to Effective Design and and wasteful consumption. WWF works to reverse Management of MPAs for Sharks declining shark populations through Sharks: Restoring and Rays. WWF, Gland, Switzerland. the Balance, a global initiative. www.panda.org DESIGN AND PRODUCTION: sharks.panda.org Evan Jeffries, Catherine Perry – Swim2Birds Ltd ABOUT CSTFA www.swim2birds.co.uk Research within the Centre for Sustainable Tropical Fisheries and Aquaculture (CSTFA) focuses not only Published in May 2019 by WWF on the aquatic and aquaculture systems that produce – World Wide Fund for Nature, food, but also the industries and communities that Gland, Switzerland utilise them. Multidisciplinary collaborations between our researchers provide the synergies to address Any reproduction in full or part substantial research problems in a way that individual must mention the title and credit research groups cannot. -
A Systematic Revision of the South American Freshwater Stingrays (Chondrichthyes: Potamotrygonidae) (Batoidei, Myliobatiformes, Phylogeny, Biogeography)
W&M ScholarWorks Dissertations, Theses, and Masters Projects Theses, Dissertations, & Master Projects 1985 A systematic revision of the South American freshwater stingrays (chondrichthyes: potamotrygonidae) (batoidei, myliobatiformes, phylogeny, biogeography) Ricardo de Souza Rosa College of William and Mary - Virginia Institute of Marine Science Follow this and additional works at: https://scholarworks.wm.edu/etd Part of the Fresh Water Studies Commons, Oceanography Commons, and the Zoology Commons Recommended Citation Rosa, Ricardo de Souza, "A systematic revision of the South American freshwater stingrays (chondrichthyes: potamotrygonidae) (batoidei, myliobatiformes, phylogeny, biogeography)" (1985). Dissertations, Theses, and Masters Projects. Paper 1539616831. https://dx.doi.org/doi:10.25773/v5-6ts0-6v68 This Dissertation is brought to you for free and open access by the Theses, Dissertations, & Master Projects at W&M ScholarWorks. It has been accepted for inclusion in Dissertations, Theses, and Masters Projects by an authorized administrator of W&M ScholarWorks. For more information, please contact [email protected]. INFORMATION TO USERS This reproduction was made from a copy of a document sent to us for microfilming. While the most advanced technology has been used to photograph and reproduce this document, the quality of the reproduction is heavily dependent upon the quality of the material submitted. The following explanation of techniques is provided to help clarify markings or notations which may appear on this reproduction. 1.The sign or “target” for pages apparently lacking from the document photographed is “Missing Pagefs)”. If it was possible to obtain the missing page(s) or section, they are spliced into the film along with adjacent pages. This may have necessitated cutting through an image and duplicating adjacent pages to assure complete continuity. -
Updated Checklist of Marine Fishes (Chordata: Craniata) from Portugal and the Proposed Extension of the Portuguese Continental Shelf
European Journal of Taxonomy 73: 1-73 ISSN 2118-9773 http://dx.doi.org/10.5852/ejt.2014.73 www.europeanjournaloftaxonomy.eu 2014 · Carneiro M. et al. This work is licensed under a Creative Commons Attribution 3.0 License. Monograph urn:lsid:zoobank.org:pub:9A5F217D-8E7B-448A-9CAB-2CCC9CC6F857 Updated checklist of marine fishes (Chordata: Craniata) from Portugal and the proposed extension of the Portuguese continental shelf Miguel CARNEIRO1,5, Rogélia MARTINS2,6, Monica LANDI*,3,7 & Filipe O. COSTA4,8 1,2 DIV-RP (Modelling and Management Fishery Resources Division), Instituto Português do Mar e da Atmosfera, Av. Brasilia 1449-006 Lisboa, Portugal. E-mail: [email protected], [email protected] 3,4 CBMA (Centre of Molecular and Environmental Biology), Department of Biology, University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal. E-mail: [email protected], [email protected] * corresponding author: [email protected] 5 urn:lsid:zoobank.org:author:90A98A50-327E-4648-9DCE-75709C7A2472 6 urn:lsid:zoobank.org:author:1EB6DE00-9E91-407C-B7C4-34F31F29FD88 7 urn:lsid:zoobank.org:author:6D3AC760-77F2-4CFA-B5C7-665CB07F4CEB 8 urn:lsid:zoobank.org:author:48E53CF3-71C8-403C-BECD-10B20B3C15B4 Abstract. The study of the Portuguese marine ichthyofauna has a long historical tradition, rooted back in the 18th Century. Here we present an annotated checklist of the marine fishes from Portuguese waters, including the area encompassed by the proposed extension of the Portuguese continental shelf and the Economic Exclusive Zone (EEZ). The list is based on historical literature records and taxon occurrence data obtained from natural history collections, together with new revisions and occurrences. -
Batoid Abundances, Spatial Distribution, and Life History Traits
animals Article Batoid Abundances, Spatial Distribution, and Life History Traits in the Strait of Sicily (Central Mediterranean Sea): Bridging a Knowledge Gap through Three Decades of Survey Michele Luca Geraci 1,2 , Sergio Ragonese 2,*, Danilo Scannella 2, Fabio Falsone 2, Vita Gancitano 2 , Jurgen Mifsud 3, Miriam Gambin 3, Alicia Said 3 and Sergio Vitale 2 1 Geological and Environmental Sciences (BiGeA)–Marine Biology and Fisheries Laboratory, Department of Biological, University of Bologna, Viale Adriatico 1/n, 61032 Fano, PU, Italy; [email protected] 2 Institute for Marine Biological Resources and Biotechnology (IRBIM), National Research Council–CNR, Via Luigi Vaccara, 61, 91026 Mazara del Vallo, TP, Italy; [email protected] (D.S.); [email protected] (F.F.); [email protected] (V.G.); [email protected] (S.V.) 3 Department of Fisheries and Aquaculture, Ministry for Agriculture, Fisheries and Animal Rights (MAFA), Ghammieri Government Farm, Triq l-Ingiered, Malta; [email protected] (J.M.); [email protected] (M.G.); [email protected] (A.S.) * Correspondence: [email protected] Simple Summary: Batoid species are cartilaginous fish commonly known as rays, but they also Citation: Geraci, M.L.; Ragonese, S.; include stingrays, electric rays, guitarfish, skates, and sawfish. These species are very sensitive Scannella, D.; Falsone, F.; Gancitano, to fishing, mainly because of their slow growth rate and late maturity; therefore, they need to be V.; Mifsud, J.; Gambin, M.; Said, A.; adequately managed. Regrettably, information on life history traits (e.g., length at first maturity, Vitale, S. Batoid Abundances, Spatial sex ratio, and growth) and abundance are still scarce, particularly in the Mediterranean Sea. -
An Annotated Checklist of the Chondrichthyan Fishes Inhabiting the Northern Gulf of Mexico Part 1: Batoidea
Zootaxa 4803 (2): 281–315 ISSN 1175-5326 (print edition) https://www.mapress.com/j/zt/ Article ZOOTAXA Copyright © 2020 Magnolia Press ISSN 1175-5334 (online edition) https://doi.org/10.11646/zootaxa.4803.2.3 http://zoobank.org/urn:lsid:zoobank.org:pub:325DB7EF-94F7-4726-BC18-7B074D3CB886 An annotated checklist of the chondrichthyan fishes inhabiting the northern Gulf of Mexico Part 1: Batoidea CHRISTIAN M. JONES1,*, WILLIAM B. DRIGGERS III1,4, KRISTIN M. HANNAN2, ERIC R. HOFFMAYER1,5, LISA M. JONES1,6 & SANDRA J. RAREDON3 1National Marine Fisheries Service, Southeast Fisheries Science Center, Mississippi Laboratories, 3209 Frederic Street, Pascagoula, Mississippi, U.S.A. 2Riverside Technologies Inc., Southeast Fisheries Science Center, Mississippi Laboratories, 3209 Frederic Street, Pascagoula, Missis- sippi, U.S.A. [email protected]; https://orcid.org/0000-0002-2687-3331 3Smithsonian Institution, Division of Fishes, Museum Support Center, 4210 Silver Hill Road, Suitland, Maryland, U.S.A. [email protected]; https://orcid.org/0000-0002-8295-6000 4 [email protected]; https://orcid.org/0000-0001-8577-968X 5 [email protected]; https://orcid.org/0000-0001-5297-9546 6 [email protected]; https://orcid.org/0000-0003-2228-7156 *Corresponding author. [email protected]; https://orcid.org/0000-0001-5093-1127 Abstract Herein we consolidate the information available concerning the biodiversity of batoid fishes in the northern Gulf of Mexico, including nearly 70 years of survey data collected by the National Marine Fisheries Service, Mississippi Laboratories and their predecessors. We document 41 species proposed to occur in the northern Gulf of Mexico. -
Redescription and Taxonomic Status of Dipturus Chilensis (Guichenot, 1848), and Description of Dipturus Lamillai Sp
Zootaxa 4590 (5): 501–524 ISSN 1175-5326 (print edition) https://www.mapress.com/j/zt/ Article ZOOTAXA Copyright © 2019 Magnolia Press ISSN 1175-5334 (online edition) https://doi.org/10.11646/zootaxa.4590.5.1 http://zoobank.org/urn:lsid:zoobank.org:pub:F484C560-CAE9-4A9E-B408-AEC2C8893DAD Redescription and taxonomic status of Dipturus chilensis (Guichenot, 1848), and description of Dipturus lamillai sp. nov. (Rajiformes: Rajidae), a new species of long-snout skate from the Falkland Islands FRANCISCO J. CONCHA1,2,7, JANINE N. CAIRA1, DAVID A. EBERT3,4,5 & JOOST H. W. POMPERT6 1Department of Ecology & Evolutionary Biology, University of Connecticut, 75 North Eagleville Road, Unit 3043 Storrs, CT 06269 – 3043, USA 2Facultad de Ciencias del Mar y de Recursos Naturales, Universidad de Valparaíso, Av. Borgoño 16344, Viña del Mar, Chile 3Pacific Shark Research Center, Moss Landing Marine Laboratories, Moss Landing, CA 95039, USA 4Department of Ichthyology, California Academy of Sciences, 55 Music Concourse Drive, San Francisco, CA 94118, USA 5South African Institute for Aquatic Biodiversity, Private Bag 1015, Grahamstown 6140, South Africa 6Georgia Seafoods Ltd, Waverley House, Stanley, Falkland Islands, United Kingdom 7Corresponding author. E-mail: [email protected] Abstract Recent molecular evidence has called into question the identity of skates collected in the waters off the Falkland Islands previously identified as Zearaja chilensis. NADH2 sequence data indicate that these specimens are not conspecific with those currently referred to as Z. chilensis from Chile and, in fact, represent a novel cryptic species. This study aimed to investigate this hypothesis based on morphological comparisons of specimens from the coasts of both western and eastern South America. -
Cuckoo Ray (Leucoraja Naevus) in Division 9.A (Atlantic Iberian Waters)
ICES Advice on fishing opportunities, catch, and effort Bay of Biscay and the Iberian Coast ecoregion Published 2 October 2020 Cuckoo ray (Leucoraja naevus) in Division 9.a (Atlantic Iberian waters) ICES advice on fishing opportunities ICES advises that when the precautionary approach is applied, catches should be no more than 120 tonnes in each of the years 2021 and 2022. If discard rates do not change from the average of the last five years (2015–2019), this implies landings of no more than 84 tonnes. Note: This advice sheet is abbreviated due to the COVID-19 disruption. The previous advice issued for 2019 and 2020 is attached as Annex 1. Stock development over time Figure 1 Cuckoo ray in Division 9.a. Left: ICES landings estimates (all fleets: 2002–2019) and discards (Spanish fleet: 2015– 2019). Right: The stock-size indicator (solid line) is the combined biomass survey index (normalized) from the two Spanish groundfish surveys in the Gulf of Cadiz (SpGFS-GC-WIBTS-Q1, SpGFS–GC-WIBTS-Q4). Horizontal lines indicate the mean stock-size indicator values for 2013–2017 and 2018–2019. Stock and exploitation status Table 1 Cuckoo ray in Division 9.a. State of the stock and the fishery relative to reference points. Catch scenarios The precautionary buffer was last applied in 2014. The status of the stock size and fishing pressure relative to reference points is unknown. However, because of a long-term increase in the stock-size indicator since 1998 and a significant decrease in the fishing effort over the last ten years, the precautionary buffer was not applied in 2020. -
Report on the Status of Mediterranean Chondrichthyan Species
United Nations Environment Programme Mediterranean Action Plan Regional Activity Centre For Specially Protected Areas REPORT ON THE STATUS OF MEDITERRANEAN CHONDRICHTHYAN SPECIES D. CEBRIAN © L. MASTRAGOSTINO © R. DUPUY DE LA GRANDRIVE © Note : The designations employed and the presentation of the material in this document do not imply the expression of any opinion whatsoever on the part of UNEP concerning the legal status of any State, Territory, city or area, or of its authorities, or concerning the delimitation of their frontiers or boundaries. © 2007 United Nations Environment Programme Mediterranean Action Plan Regional Activity Centre for Specially Protected Areas (RAC/SPA) Boulevard du leader Yasser Arafat B.P.337 –1080 Tunis CEDEX E-mail : [email protected] Citation: UNEP-MAP RAC/SPA, 2007. Report on the status of Mediterranean chondrichthyan species. By Melendez, M.J. & D. Macias, IEO. Ed. RAC/SPA, Tunis. 241pp The original version (English) of this document has been prepared for the Regional Activity Centre for Specially Protected Areas (RAC/SPA) by : Mª José Melendez (Degree in Marine Sciences) & A. David Macías (PhD. in Biological Sciences). IEO. (Instituto Español de Oceanografía). Sede Central Spanish Ministry of Education and Science Avda. de Brasil, 31 Madrid Spain [email protected] 2 INDEX 1. INTRODUCTION 3 2. CONSERVATION AND PROTECTION 3 3. HUMAN IMPACTS ON SHARKS 8 3.1 Over-fishing 8 3.2 Shark Finning 8 3.3 By-catch 8 3.4 Pollution 8 3.5 Habitat Loss and Degradation 9 4. CONSERVATION PRIORITIES FOR MEDITERRANEAN SHARKS 9 REFERENCES 10 ANNEX I. LIST OF CHONDRICHTHYAN OF THE MEDITERRANEAN SEA 11 1 1.